mRNA_P-littoralis_Contig21.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig21.13.1
Unique NamemRNA_P-littoralis_Contig21.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig21.13.1 vs. uniprot
Match: A0A6H5K2P7_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2P7_9PHAE)

HSP 1 Score: 667 bits (1722), Expect = 8.280e-231
Identity = 337/605 (55.70%), Postives = 424/605 (70.08%), Query Frame = 3
Query:  285 AAKASMSMGNRR---TGSRNRRSTTVGFAALVAFSRRSAETLASDDTSSDPYPYIGCYKDE--KQRAMSFVSRV-EVTKEGCAALCIDENTPYFGLQYGSECFCGDNYDRYGAVEQDDGYDCDMTLEFEPDVEAGGKWAMSIYSTDAGAAVNAITASSGGTGAGSTQEGTTTVESSTRDAVTSGKRAFTVVNECSQTIRIGSTGGRISFEDAED-DSADACAAFGPAGVYNSGELGRGCYWDLPAEEGGNTDRMLEPGNYFRYYLAETTSNTRWSGTIWAGTGCDKIDGCATGFCYNENTDHVCPAYIGPGGSTSKGEFTLSDFGKDYYDISLIDGANLPMVVEPDNPVFPSKTQSDAQNIFKYQCGSPGATSAHLDSLADCSWSFDTTV-SLY-EEDLSKYVRLVLP-DYDKLVSCDSDDECDE-VCGVHPKRYQDGSFIGGVEGGSCGEHVGWVSAGGACAGGWDTGEFPDSFPYYCGTAAADDNEMANMYGCFGGSLGHSGYTAGATNSSCGCPDWEGDPFYLTAPAISDCQATNPEWIEYAFPWAGLLKKACPTAYTFPYDDQTSTFTCYDGEGPGTENYVNTQSYTITFCPGDSEKNMYG 2066
            A++++   G+RR      RN R+  V   ALVA +RR A   A  +  S  Y Y GC+ D   K RAM  +S + ++T E CA +C+++   Y GL++  ECFCG++YD +G+        CDM L  EP VEAGG WA+S+Y       VN+ +A++     G +   TT    S   AV SGKRAFTVVNECSQ +R+GSTGGRI+F    D +S D C A+GP+  YN+G +G GCYWD P EE GNTDRML PG  FRYYL ET S+ RWSGTIW  TGCDKI GCATG CY+ +TD++CPAY+GPGG T+K EFTLS+ GKDYYDIS IDG NLPM++EPDNPVFP+ T+   QNI KYQCGSPGA  +H   +  C+WS++TTV  L+  EDLS+++RLVLP DY+    C SD EC   +CGVHP+R+ DGS+ GGVE GSCGEH+ WV+AGGACAGGW+ G FPD+ P++CG+  +     ++MYGC+G +L HSGYT GA  ++CGCP+WE  P+ L AP ISDC   NPEW+E + PW    K+ACPTAYTFPYDDQTSTFTC+DG+GPG     NTQSYTITFCPGD+EKNM+G
Sbjct:    9 ASRSAGKSGSRRCSWANGRNWRAVEVASVALVALTRRVA---AQSEEVSGIYTYKGCFVDNPGKDRAMEHMSIIPDLTLERCAVICMEKGYAYAGLEWKIECFCGNSYDEWGSSTS-----CDMYLAAEPTVEAGGSWALSVYGLPEVLDVNSNSAAAVAASEGGSDAKTTAKSLSDLGAVKSGKRAFTVVNECSQDVRVGSTGGRITFGSGTDPESKDNCDAWGPSATYNTGPMGIGCYWDFPEEESGNTDRMLSPGQAFRYYLHETDSDVRWSGTIWGSTGCDKIAGCATGVCYSPSTDYICPAYVGPGGPTTKAEFTLSETGKDYYDISAIDGTNLPMMIEPDNPVFPNSTE---QNIMKYQCGSPGAPVSHHSKIDGCTWSYETTVPDLHGSEDLSQFLRLVLPEDYENTTLCTSDWECTTGICGVHPQRWADGSYKGGVEQGSCGEHIAWVTAGGACAGGWEDGTFPDAHPFFCGSEVSG-GMRSHMYGCYGTTLAHSGYTPGADTTACGCPEWEDPPYNLMAPPISDCTGINPEWVELSMPWHAHQKRACPTAYTFPYDDQTSTFTCFDGDGPGNP---NTQSYTITFCPGDTEKNMFG 598          
BLAST of mRNA_P-littoralis_Contig21.13.1 vs. uniprot
Match: D7FRB8_ECTSI (Thaumatin-domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB8_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 2.560e-83
Identity = 196/578 (33.91%), Postives = 273/578 (47.23%), Query Frame = 3
Query:  417 SSDPYPYIGCYKDEKQRAMSFVSRVEV-----TKEGCAALCIDENTPYFGLQYGSECFCGDNY--DRYGAVEQDDGYDCDMTLEFEPDVEAGGKWAMSIYSTDAGAAVNAITASSGGTGAGSTQEGTTTVESSTR-DAVTSGKRAFTVVNECSQTIRIGSTGGRISFEDAEDDSADACAAFGPAGVYNSGELGRGCYWDLPAEEGGNTDRMLEPGNYFRYYLAETTSN-TRWSGTIWAGTGCDKIDGCATGFCYNE--NTDHVCPAYIGPGGSTSKGEFTLSDFGKDYYDISLIDGANLPMVVEPDNPVFPSKTQSDAQNIFKYQCGSPGATSAHLDSLADCSWSFDTTV--SLYEEDLSKYVRLVLPDYDKLVSCDSDDECDEVCGVHP-KRYQDGSFIGG--VEGG--------SCGEHVGWVSAGGACAGGWDT--GEFPDSFPYYCGT----AAADDNEMANMYGCFGGSLGHSGYTAGATNSSCGCPDWEGDPFYLTAPAISDCQATNPEWIEYAFPWAGLLKKACPTAYTFPYDDQTSTFTCYDGEGPGTENYVNTQSYTITFCPGDSEKNM 2060
            +S    Y+GC+ D+      F+    +     T + CA  C      Y  LQY  +CFC D Y      A+  D    C+M  + + +V  GG W+ SIY                G     T+E     E     D V   +R FTV+N C + +R+G+TGG +   D  D + ++C    P G      +G  C+W LP  E   T   +EPG      L     N  RWSG +WA TGC    GC T  C       D  CP   GP G  +K EFTL D G DYYD++ IDG N+P+ ++PD    P +   D      Y C +PG  S+  + L  C+W FD T      + D+S Y+R V  D      C+ D +C++V G    ++ + G+  G   + GG         CG ++GW S    C        G FP+SFP+ C         D++  +++YGC G   G SGY+  A +++CGCPDW      + AP+ S C   NP W   + PW   LK+ACPTAY FPYDD +STF C + +     +  N+ SYTI FCPGDS+ N+
Sbjct:  243 TSSGLTYVGCFMDDDTGLTRFLDDKSMQDENLTPQSCAEFC--SGYKYMALQYSQDCFCADTYYTAERDAIPTDT---CNMPCKGDENVICGGAWSNSIYIV--------------GDPTEMTEEELAAQEGPKESDGVP--RRKFTVINSCFEQVRLGATGGYVKALD--DPTVESC----PEGSVLDEAVGA-CFWGLPLPEDDKTFD-IEPGGSIEVILDNNAVNGVRWSGNMWAATGCHSKVGCETASCLRNIGYPDGYCPPSTGPTGPVTKAEFTLVDTGVDYYDVTAIDGVNVPVEMKPDPLSSPLEKLEDP-----YWCSNPGGVSSMSEELEGCTWEFDATEIDGFPDHDMSMYLRWVRND-GLFTDCEDDSDCEDVEGEGVGQKLKCGALFGQDTLNGGVTEEMFPKKCGSNLGWHSPNAICGNSRSKPLGYFPNSFPFMCDKHTMQVIGDNSTYSDIYGCAGPIYGLSGYSRNAEDTACGCPDWPA--LGINAPSESTCYGKNPYWEALSVPWLKYLKRACPTAYCFPYDDHSSTFVCRNEDENNDHDGKNSMSYTIEFCPGDSQGNL 783          
BLAST of mRNA_P-littoralis_Contig21.13.1 vs. uniprot
Match: A0A346QZ21_9HYPH (Uncharacterized protein n=2 Tax=Breoghania sp. L-A4 TaxID=2304600 RepID=A0A346QZ21_9HYPH)

HSP 1 Score: 203 bits (516), Expect = 3.650e-54
Identity = 146/428 (34.11%), Postives = 200/428 (46.73%), Query Frame = 3
Query:  816 GKRAFTVVNECSQTIRIGSTGGRISFEDAEDDSADACAAFGPAGVYNSGELGRGC-------YWDLPAEEGGNTDRMLEPGNYFRYYLAETTSNTRWSGTIWAGTGCDKI-DGCATGFCYNENTDHVCPAYIGPGGSTSKGEFTLSDFGKDYYDISLIDGANLPMVVEPDNPVFPSKTQSDAQNIFKYQCGSPGATSAHLDSLADCSWSFDTTVSLYEEDLSKYVRLVLPDYDKLVSCDSDDECD--EVCGVHPKRYQDGSFIGGVEGGSCGEHVGWVSAGGACAGGWDTGEFPD-SFPYYCGTAAADDN----EMANMYGCF----GGSLGHSGYTAGATNSSCGCPDWEGDPFYLTAPAISDCQATNPEWIEYAFPWAGLLKKACPTAYTFPYDDQTSTFTCYDGEGPGTENYVNTQSYTITFCPG 2042
            G+R+ + VN+C Q + IG TGG          + DAC      G  NS   G+ C       Y+ L     G      + G    + +   T  T+WSG ++  TGCD   + C TG C        CP   G     ++ EFTL     D+YD+ +I+G NLPM ++P     P K+  D      Y CG+PG  +   D+L  C+W+FDTTV     D + Y+R+V P  D   +C +D +C    +CG+     Q G+ +  +    CG  +GW S    C      G  P    P+ CG A    N     +AN++GC     G     S YT GA+++ CGCP+W     Y T    + CQA N  W     PW   LK ACPTAY++PYDD+TSTFTC            N   YTIT+CPG
Sbjct:   59 GERSVSFVNQCVQQVWIGVTGG----------AGDAC------GAKNSCPTGQACNTNNNTCYYTLGTPAAGGYGLAAKTGTA-EFCVPAQTGATQWSGNVFGRTGCDASGNNCQTGECGGS----PCPPGQGGNPPVTQAEFTLQTTASDFYDVEIINGFNLPMEMKPTGGA-PYKSVPDNP----YTCGNPGGVTPLNDTLTGCTWTFDTTVG--GTDYASYLRMVAP-ADPQTACTADSDCSGGALCGL----VQQGASLSRM----CGSEIGWWSGDQVC------GVDPTFGAPFNCGQAVPAANGAFGTVANLFGCVLDKTGKPAAQSCYTDGASDTCCGCPNWP----YPTDDGKT-CQAINSAWTTSVQPWVSFLKNACPTAYSYPYDDKTSTFTCQSQAA------TNAVDYTITYCPG 432          
BLAST of mRNA_P-littoralis_Contig21.13.1 vs. uniprot
Match: B5LW99_9PHYC (Putative thaumatin/PR5-like protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW99_9PHYC)

HSP 1 Score: 159 bits (403), Expect = 2.920e-39
Identity = 137/424 (32.31%), Postives = 188/424 (44.34%), Query Frame = 3
Query:  822 RAFTVVNECSQTIRIGSTGGRISFEDAEDDSADACAAFGPAGVYNSGELGRGCYWDLPAEEGGNTDRMLEPGNYFRYYLAETTSNTRWSGTIWAGTGCDKIDGCATGFCYNENTDHVCPAYIGPGGSTSKGEFTLSDFGKDYYDISLIDGANLPMVVEPDNPVFPSKTQSDAQNIFKYQCGSPGATSAHLDSLADCSWSFDTTVSLYEEDLSKYVRLVLPDYDKLVSCDSDDECD---EVCGVHPKRYQDGSFIGGVEGGSCGEHVGWVSAGGACAGGWDTGEFPDSFPYYCGTAAADDNEMANMYG---CFGGSLGHSGYTAGATNSS----CGCPDWEGDPFYLTAPAISDCQATNPEWIEYAFPWAGLLKKACPTAYTFPYDDQTSTFTCYDGEGPGTENYVNTQSYTITFCPGDSEKNMY 2063
            R  T++N C+  + +G TGG    E    +SA       P       E    C+W L   EG  + ++L  G  +   + E   N  +SG +W G   D+ D    G          C  + GPGGS +K EFT    G DYYDIS+I+G NLP+ + PD+         D +N  KY CG  G          DCSW F       + DL KY+ LV  + D   +C++  +C    +VCG + K +           G CGE  G+ SA   C  G         +P++C            +YG      G    SGY A    SS    CGCPDWE     + AP +S C++++  W E + P+   LK+ CP+AY F Y D TSTF+C    G           YTI FCPGDSE+  +
Sbjct:   34 RHLTILNSCTFDLALGVTGGN---EGPAKESATC-----PLNQMFHEETDN-CFWHL---EG--SPKVLLSGASWETDIHEV-KNHLFSGNVW-GVKEDQFDSHCRG--------GECMPWRGPGGSVTKVEFTFIPNGIDYYDISVIEGVNLPVTMSPDSG------DKDLEN--KYICGVAGG---------DCSWDFKP-----DHDLEKYLTLVTANGDGS-TCETTVDCPRAGDVCGTYDKEH-----------GVCGELNGFSSAHSNCIAG------ATGYPFHC-----------ELYGDAISCSGRYHLSGYNAHVYTSSDHRVCGCPDWE--EMGVNAPPVSPCRSSDETWEERSLPFLIFLKRGCPSAYEFAYSDMTSTFSCPTSSG-----------YTIEFCPGDSEERFF 369          
BLAST of mRNA_P-littoralis_Contig21.13.1 vs. uniprot
Match: UPI00098691A3 (hypothetical protein n=1 Tax=Marinicella sediminis TaxID=1792834 RepID=UPI00098691A3)

HSP 1 Score: 162 bits (411), Expect = 5.020e-39
Identity = 135/454 (29.74%), Postives = 186/454 (40.97%), Query Frame = 3
Query:  822 RAFTVVNECSQTIRIGSTGGRISFEDAEDDSADACAAFGPAGVYNS--GELGRGCYWDLPAEEGGNTDRMLEPGNYFRYYLAETTSN------------------TRWSGTIWAGTGCDKIDG---CATGFCYNENTDHVCPAYIGPGGSTSKGEFTLSDFGKDYYDISLIDGANLPMVVEPD-------NPVFPSKTQSDAQNIFK-----YQCGSPGATSAHLDSLADCSWSFDTTVSLYEEDLSKYVRLVLPDYDKLVSCDSDDECDEV-----CGVHPKRYQDGSFIGGVEGGSCGEHVGWVSAGGACAGGWDTGEFPDSFPYYCGTAAADDNEMANMYGCFGGSLGHSGYTA--GATNSSCGCPDWEGDPFYLTAPAISD-CQATNPEWIEYAFPWAGLLKKACPTAYTFPYDDQTSTFTCYDGEGP-GTENYV--NTQSYTITFCPGD 2045
            R  T  N C   +  G TGG I       D A +C      G+  +      + C+W +P+    NTD  ++     R +L +  S+                   +WSG  WA T C        C T  C +      C  + GP G  S  EFTL    +DYYD+S+I G N+P+ ++P         P  P++ +    N        Y CG PG+ SA   +L  C+W+ D   +    +L        P+     +C  D +C  V     CG+          +       CG   GW SA   CA   D      S  + C TA        N+Y C  G    SGY A  G T++ CGC DW+        P     C  +N +W+  A P A + K ACPTAY+FP+DD+TSTF C     P  T   +  N   YTITFCPG+
Sbjct:  112 RTITYTNSCGFDVWAGYTGGAI-------DGAPSCKKNSDCGITGAVCDTKNKQCFWGIPSMT--NTDNTIK-----RLHLPKGGSSKNITLNSPIHQKDAANAWVKWSGNSWASTNCTGTGAAMVCETAACPSGG----CTPFTGPKGVLSLAEFTLQASAQDYYDVSIIGGFNVPVSMQPTAGQSYATTPAGPTQQKDGLGNTVTVNPSAYWCGEPGSASAST-ALTACNWAPDAKATYGNANLRSVYP---PNTTTTTACKKDSDCKAVTGGKSCGLWENSKNKIERV-------CGSPRGWWSANQVCA--IDPKGTIGSTVFGCETAVTGQGTQENLYAC-NGVNNTSGYAAASGITSTLCGCDDWD-------LPVNGHGCNGSNAQWVNIAQPAAKIKKDACPTAYSFPFDDETSTFNCQTDPKPIATSGAITANAVDYTITFCPGN 526          
BLAST of mRNA_P-littoralis_Contig21.13.1 vs. uniprot
Match: A0A0W0ZGR1_9GAMM (Thaumatin domain-containing protein n=2 Tax=Legionella steelei TaxID=947033 RepID=A0A0W0ZGR1_9GAMM)

HSP 1 Score: 157 bits (398), Expect = 2.610e-37
Identity = 131/422 (31.04%), Postives = 184/422 (43.60%), Query Frame = 3
Query:  822 RAFTVVNECSQTIRIGSTGGRISFEDAEDDSADACAA----FGPAGVYNSGELGRGCYWDLPAEEGGNTDRMLEPG-NYFRYYLAETTSNTRWSGTIWAGTGCDKIDGCATGFCYNENTDHVCPAYIGPGGSTSKGEFTLSDFGKDYYDISLIDGANLPMVVEPDNPVFPSKTQSDAQNIFKYQCGSPGATSAHLDSLADCSWSFDTTVSLYEEDLSKYVRLVLPDYDKLVSCDSDDECDEVCGVHPKRYQDGSFIGGVEG---GSCGEHVGWVSAGGACAGGWDTGEFPD-SFPYYCGT---AAADDNEMANMYGCFGGSLGHSGYTAGATNSSCGCPDWEGDPFYLT-APAISDCQATNPEWIEYAFPWAGLLKKACPTAYTFPYDDQTSTFTCYDGEGPGTENYVNTQSYTITFCPGDS 2048
            RA T VN CSQ +  G   G +           +C +    +  +    +G + + C+W +P     N       G N     +     N  WSG I   T C     C T  C   +  + C   +G     ++ EFT    G DYYD+ +I+G NLP+ + P       K  S   N   Y CGSPGA +     L  CSW+F+   + Y        R V      + + DSD      CG+        SF  G       SCG  +G+ +A   C      G  P+   P+ C     A  D+  + N+Y C   ++G S Y+ GA+N+ CGC DW+     +  AP  + C  TN  W  Y  P    LK ACPTAY +P+DD +STFTC +      +N VN ++YTIT+CPG S
Sbjct:   50 RAITFVNNCSQPVWFGLISGSVQNTHPAHPGDTSCNSNSDCYTGSVCTQTGAI-KQCFWQVPIPANTNYQLAANGGTNTVTIPIYSNQQNVIWSGAIAGRTQCAN-GACQTADC--GSGVNGCKEGVGFQQPATQAEFTFLKNGPDYYDVEIINGFNLPVSMTP-------KNTSSNTNTAPYTCGSPGAATQTNSLLGACSWTFNPPSNDY--------RWVAAG-GGICNVDSDCPSSSTCGI--------SFNPGKNPLLKKSCGTLLGYWTADQIC------GLQPNYGAPFNCAQKLPAPQDNLTLWNLYACT--NVG-SCYSQGASNNCCGCVDWDKTGIEVPPAPYTNQCNNTNMNWNNYVQPTLSWLKAACPTAYVYPFDDMSSTFTCAN-----MQNNVNVENYTITYCPGSS 429          
BLAST of mRNA_P-littoralis_Contig21.13.1 vs. uniprot
Match: A0A5E4PDG3_9COXI (Uncharacterized protein n=1 Tax=Aquicella siphonis TaxID=254247 RepID=A0A5E4PDG3_9COXI)

HSP 1 Score: 157 bits (396), Expect = 7.320e-37
Identity = 131/434 (30.18%), Postives = 190/434 (43.78%), Query Frame = 3
Query:  822 RAFTVVNECSQTIRIGSTGGRIS--FEDAEDDSADACAAFGPAGVYNSGE---------LGRGCYWDLPAEEGGNTDRMLEPG-NYFRYYLAETTSNTRWSGTIWAGTGCDKIDGCATGFCYNENTDHVCPAYIGPGGSTSKGEFTL-------------SDFGKDYYDISLIDGANLPMVVEPDNPVFPSKTQSDAQNIFKYQCGSPGATSAHLDSLADCSWSFDTTVSLYEEDLSKYVRLVLPDYDKLVSCDSDDECD--EVCGVHPKRYQDGSFIGGVEGGSCGEHVGWVSAGGACAGGWDTGEFPDSFPYYCGTAAADDNEMANMYGCFGGSLGHSGYTAGATNSSCGCPDWEGDPFYL-TAPAISDCQATNPEWIEYAFPWAGLLKKACPTAYTFPYDDQTSTFTCYDGEGPGTENYVNTQSYTITFCP 2039
            R FT VN CS  +  G   G       D      D  +    +  Y   +         + + C+W  P+   GN       G N     + +   +T WSG I A T C    GC TG C        CP   G     S  EFTL             ++   D YD+++I+G  +P+ + PDN      T   A N   Y CG+PG  +A    L  C+W+F    + Y     KYV           +C+S+ +C   +VCG+    Y   +  G     +CG  +G+ +A   CA         ++ P+ C T        A+++GC  G+L  S Y+AGA ++ CGC +WE     + ++P    C A NP W   + P    LK +CPTAY++PYDD +STFTC   +    +N VNT +YT+TFCP
Sbjct:  158 RTFTFVNNCSYPVWFGIASGATDSIHPDPSTSPLDLKSCLSDSDCYPGSQCVQVQSTPTVLKHCFWINPSPSNGNYQLPASAGTNSLTIPVYDNGIDTIWSGGIAARTNCTD-SGCDTGDCGGGTG--ACPISQGFSAPVSTAEFTLLNKNPVVYSNTPSNNTDVDTYDVTVINGVTVPVSMTPDNG-----TWGGANN--PYVCGTPGRLTAQSP-LGACTWNFTPPSNDYV--WVKYVS-------SPTACNSNIDCTSPDVCGL---SYNPSAAAGSQITKTCGAFLGYWTADAVCA----KDPQHNAAPFTCTTPVQGSLTFADLFGCSTGALNQSCYSAGAISTCCGCVNWETLGVTVPSSPITQACNAVNPVWTTNSQPTLLWLKNSCPTAYSYPYDDASSTFTC---QVLNAQN-VNTTNYTVTFCP 560          
BLAST of mRNA_P-littoralis_Contig21.13.1 vs. uniprot
Match: A0A2H0PDB2_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 TaxID=1973975 RepID=A0A2H0PDB2_9DELT)

HSP 1 Score: 149 bits (375), Expect = 1.180e-34
Identity = 134/455 (29.45%), Postives = 192/455 (42.20%), Query Frame = 3
Query:  813 SGKRAFTVVNECSQTIRIGSTGGRISFE---DAEDDSADACAAFG---PAG-----VYNSGELGRGCYWDLPAEEGGNTDRMLEPGNYFRYYLAETTSNTRWSGTIWAGTGCDKI-DGCATGFCYNENTDHVCPAYIGPGGSTSKGEFTLSDFGK-------DYYDISLIDGANLPMVVEPDNPVFPSKTQSDAQNIFKYQCGSPGATSAHLDSLADCSWSFDTTVS-------LYEEDLSKYVRLVLPDYDK-----LVSCDSDDECDE---VCGVHPKRYQDGSFIGGVEGGSCGEHVGWVSAGGACAGGWDTGEFPDSFPYYCGTAAADDNEMAN----MYGCFGGSLGHSGYTAGATNSSCGCP-----DWEGDPFYLTAP---AISDCQATNPEWIEYAFPWAGLLKKACPTAYTFPYDDQTSTFTCYDGEGPGTENYVNTQSYTITFCP 2039
            S +R FT+VN   Q I +G T G +S     D    ++ +C A     P G     +         CYW+ P+      +      +   +       + +W G I+A TGCD     C TG C   N+  +CP   G    T+  EFTLS+          DYYDIS+I+G N+ + + P +  +       +     Y CG PG TSA +  L+ CSW+   TVS       L +   + +     PD          +C  D +C     VCG+     Q+ S     +   CG  +GW +A   C  G  +G      P  C     + +  ++    +Y C G +   S YT+GA    CGC      D+   P  +++    + + C   N  W+  + PW   LK ACPTAYT+PYDD TSTFTC      G  NY      TITF P
Sbjct:   45 SSERTFTMVNNSGQDIWVGITSGSVSCTVDADCPTGASGSCVAQVCNCPTGNECGSIATCKASNSLCYWNTPSLTTAQANLASGASSTVCFPAPGAGQDNQWGGKIFARTGCDSNGQNCKTGDC-GANSSGICPTATGGNPPTTLAEFTLSNQSSFTTTPNTDYYDISIINGINVGIKMAPVSGTY-------SAGASPYSCGIPGNTSA-VGQLSACSWTVSPTVSGTDRTTLLRDVYPTSFTGSTCPDGGSPNSLGYCTCTLDSQCSSSGLVCGL----AQNASSAQYTQ--VCGSAIGWWTADQLC--GSVSGTSAALEPLGCSLTVTNSDGSSSTYTQLYECTG-TQHQSCYTSGAAAYCCGCATSVSADYTAWPTVVSSSFGGSDNGCYNNNTNWVSISQPWLVFLKSACPTAYTYPYDDATSTFTCIGSSTVGATNY------TITFLP 475          
BLAST of mRNA_P-littoralis_Contig21.13.1 vs. uniprot
Match: A0A812X9R5_SYMPI (Poglut1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812X9R5_SYMPI)

HSP 1 Score: 145 bits (367), Expect = 3.810e-32
Identity = 132/435 (30.34%), Postives = 183/435 (42.07%), Query Frame = 3
Query:  804 AVTSGKRAFTVVNECSQTIRIGSTGGRISFEDAEDDSADACAAFGPAGVYNSGELGRGCYWDLPAEEGGNTDRMLEPGNYFRYYLAETTSN------TRWSGTIWAGTGCDKIDGCA-TGFCYNENTDHVCPAYIGPGGSTSKGEFTLSDFGKDYYDISLIDGANLPMVVEPDNPVFPSKTQSDAQNIFKYQCGSPGATSAHLDSLADCSWSFDTTVSLYEEDLSKYVRLVLPDYDKLVSCDSDDECDE--VCG------VHP--KRYQDGSFIGGVEGGSCGEHVGWVSAGGACAGGWDTGEFPDSFPYYCGTAAADDNEMANMYGCFGGSLGHSG-----YTAGA-TNSSCGCPDWEGDPFYLTAPAISDCQATNPEWIEYAFPWAGLLKKACPTAYTFPYDDQTSTFTCYDGEGPGTENYVNTQSYTITFCP 2039
            A T+G R   +VN CS+ + I  TGG              C +  P G+  + E    CY+D    E    D  + PG     +               WSG I       +  G   + FC N+     CP+Y G  G  +  EFT   FG DYYD+S+I+G N+ + ++P N  F    +  A +   Y CGS GA+      L+ CSW+FD       +DL   +R V        SC SD +C    VCG       +P  K+YQ    I  +E   CG  +G  SA   C   W    +    P+       D     NM+ C     GH       Y+ G+  +  CGC DW  D   +  P    C+  +  W E A P+  +LK+ CPTAYT+ YDD++STFTC        E+     +YT   CP
Sbjct:  410 AETTGGRRLDIVNRCSRPMVIAPTGGNSEIP---------CGSGCPGGMVCNPERSE-CYFDF---ERPGEDWTIAPGETLVMHTPNQAVQQGNGVFAEWSGKIEFYPNHTQDGGLIPSAFCNNQA---FCPSYQGLNGVATGIEFTFVPFGPDYYDVSIINGFNIGIEMKP-NGAFKQIAEEAAGSWVGYNCGSAGASHQPDIRLSSCSWNFDPRGD--GQDLGPLLRQV---DGSGKSCTSDSDCIAGLVCGQVGVRTFNPVTKQYQPTEEIR-ME---CGHQIGLWSAYQLCV--WSGNRYVSPSPF---DGLIDCPAHHNMFAC----AGHEPWITTCYSEGSHEDGCCGCADWA-DILDIPVPQAHGCRGNSTTWEESALPYYEILKRGCPTAYTYAYDDESSTFTCQSANSRQEESEAACATYTEDLCP 808          
BLAST of mRNA_P-littoralis_Contig21.13.1 vs. uniprot
Match: L8GSW0_ACACA (Thaumatin domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSW0_ACACA)

HSP 1 Score: 137 bits (344), Expect = 3.160e-31
Identity = 123/413 (29.78%), Postives = 176/413 (42.62%), Query Frame = 3
Query:  822 RAFTVVNECSQTIRIGSTGGRISFEDAEDDSADACAAFGPAGVYNSGELGRGCYWDLPAEEGGNTDRMLEPGN-----YFRYYLAETTSNTRWSGTIWAGTGCDKIDGCATGFCYNENTDHVCPAYIGPGGSTSKGEFTLSDFGKDYYDISLIDGANLPMVVEPDNPVFPSKTQSDAQNIFKYQCGSPGATSAHLDSLADCSWSFDTTVSLYEEDLSKYVRLVLPDYDKLVSCDSDDECD--EVCGVHPKRYQDGSFIGGVEGGSCGEHVGWVSAGGACAGGWDTGEFPDSFPYYCGTAAADDNEMANMYGCFGGSLGHSGYTAGATNSSCGCPDWEGDPFYLTAPAISDCQATNPEWIEYAFPWAGLLKKACPTAYTFPYDDQTSTFTCYDGEGPGTENYVNTQSYTITFCP 2039
            R F   N CS  +  G   G +            C+A  P G Y + + G  CY++ P    G  D  L P        F YY      N  WSG +   TGC+    C T  C   N DH   A+ G G   ++GEFT+     D YD+ +I+G N+P+ +   NP+  ++T         + CG+PGA      +   CSW             S +   V  D      C SD EC   EVCG+                 +CG+ +G+ +A   C    + G      P+ C        + + +YGC  G    S Y   AT++ CGC +W+ D       +++ C A NP W++   P    +KKACPT+YT+PYDD +STFTC +  G      +N   Y + FCP
Sbjct:   35 RTFHFHNNCSFPVWFGLVSGAVPN--------GRCSAGCPQGSYCNPQNGI-CYFNQPKPANG--DFRLSPNGGSNSVVFPYY--NNGLNVVWSGALAGRTGCESGT-CQTADC-GPNPDHESCAH-GFGQPATQGEFTMLTNNIDTYDVEVINGINIPLAI---NPLTSARTNDP------FFCGNPGALRPRTPT-GSCSWDLSPP--------SPHYVWVTQDGR---GCSSDRECSGGEVCGLSTPLTL-----------NCGKRLGYWTADQVCGMNSNYGA-----PFDCA-------QYSRLYGCTNGI--DSCYQPFATSTCCGCANWQ-DLGVPVPSSVTRCHAINPTWVKNVQPKLLWMKKACPTSYTYPYDDMSSTFTCSEMVGG-----LNRVDYEVVFCP 379          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2P7_9PHAE8.280e-23155.70WSC domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FRB8_ECTSI2.560e-8333.91Thaumatin-domain containing protein n=2 Tax=Ectoca... [more]
A0A346QZ21_9HYPH3.650e-5434.11Uncharacterized protein n=2 Tax=Breoghania sp. L-A... [more]
B5LW99_9PHYC2.920e-3932.31Putative thaumatin/PR5-like protein n=1 Tax=Feldma... [more]
UPI00098691A35.020e-3929.74hypothetical protein n=1 Tax=Marinicella sediminis... [more]
A0A0W0ZGR1_9GAMM2.610e-3731.04Thaumatin domain-containing protein n=2 Tax=Legion... [more]
A0A5E4PDG3_9COXI7.320e-3730.18Uncharacterized protein n=1 Tax=Aquicella siphonis... [more]
A0A2H0PDB2_9DELT1.180e-3429.45Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A812X9R5_SYMPI3.810e-3230.34Poglut1 protein n=1 Tax=Symbiodinium pilosum TaxID... [more]
L8GSW0_ACACA3.160e-3129.78Thaumatin domain containing protein n=1 Tax=Acanth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:64584..73260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog658187.LDG_8849
PFAMsThaumatin
Model size2373
Max annot lvl118969|Legionellales
Hectar predicted targeting categoryother localisation
Exons7
Evalue3.21e-24
EggNOG OGs2DX7U@1|root,343S2@2|Bacteria,1P3U7@1224|Proteobacteria,1SSQM@1236|Gammaproteobacteria,1JGPB@118969|Legionellales
Ec32 ortholog descriptionWSC and thaumatin domain protein
Ec32 orthologEc-01_005860.1
DescriptionThaumatin family
Cds size1770
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.13.1prot_P-littoralis_Contig21.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig21 64883..72956 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.477807-UTR-P-littoralis_Contig21:64583..648821680790017.477807-UTR-P-littoralis_Contig21:64583..64882Pylaiella littoralis U1_48UTRP-littoralis_Contig21 64584..64882 +
1680790017.587764-UTR-P-littoralis_Contig21:72956..732601680790017.587764-UTR-P-littoralis_Contig21:72956..73260Pylaiella littoralis U1_48UTRP-littoralis_Contig21 72957..73260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.4894686-CDS-P-littoralis_Contig21:64882..651541680790017.4894686-CDS-P-littoralis_Contig21:64882..65154Pylaiella littoralis U1_48CDSP-littoralis_Contig21 64883..65154 +
1680790017.5126193-CDS-P-littoralis_Contig21:69342..696541680790017.5126193-CDS-P-littoralis_Contig21:69342..69654Pylaiella littoralis U1_48CDSP-littoralis_Contig21 69343..69654 +
1680790017.523826-CDS-P-littoralis_Contig21:70524..709931680790017.523826-CDS-P-littoralis_Contig21:70524..70993Pylaiella littoralis U1_48CDSP-littoralis_Contig21 70525..70993 +
1680790017.5456343-CDS-P-littoralis_Contig21:71259..714001680790017.5456343-CDS-P-littoralis_Contig21:71259..71400Pylaiella littoralis U1_48CDSP-littoralis_Contig21 71260..71400 +
1680790017.5561252-CDS-P-littoralis_Contig21:71698..720371680790017.5561252-CDS-P-littoralis_Contig21:71698..72037Pylaiella littoralis U1_48CDSP-littoralis_Contig21 71699..72037 +
1680790017.5663142-CDS-P-littoralis_Contig21:72399..725861680790017.5663142-CDS-P-littoralis_Contig21:72399..72586Pylaiella littoralis U1_48CDSP-littoralis_Contig21 72400..72586 +
1680790017.5769348-CDS-P-littoralis_Contig21:72906..729561680790017.5769348-CDS-P-littoralis_Contig21:72906..72956Pylaiella littoralis U1_48CDSP-littoralis_Contig21 72907..72956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig21.13.1

>prot_P-littoralis_Contig21.13.1 ID=prot_P-littoralis_Contig21.13.1|Name=mRNA_P-littoralis_Contig21.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=590bp
MSMGNRRTGSRNRRSTTVGFAALVAFSRRSAETLASDDTSSDPYPYIGCY
KDEKQRAMSFVSRVEVTKEGCAALCIDENTPYFGLQYGSECFCGDNYDRY
GAVEQDDGYDCDMTLEFEPDVEAGGKWAMSIYSTDAGAAVNAITASSGGT
GAGSTQEGTTTVESSTRDAVTSGKRAFTVVNECSQTIRIGSTGGRISFED
AEDDSADACAAFGPAGVYNSGELGRGCYWDLPAEEGGNTDRMLEPGNYFR
YYLAETTSNTRWSGTIWAGTGCDKIDGCATGFCYNENTDHVCPAYIGPGG
STSKGEFTLSDFGKDYYDISLIDGANLPMVVEPDNPVFPSKTQSDAQNIF
KYQCGSPGATSAHLDSLADCSWSFDTTVSLYEEDLSKYVRLVLPDYDKLV
SCDSDDECDEVCGVHPKRYQDGSFIGGVEGGSCGEHVGWVSAGGACAGGW
DTGEFPDSFPYYCGTAAADDNEMANMYGCFGGSLGHSGYTAGATNSSCGC
PDWEGDPFYLTAPAISDCQATNPEWIEYAFPWAGLLKKACPTAYTFPYDD
QTSTFTCYDGEGPGTENYVNTQSYTITFCPGDSEKNMYG*
back to top

mRNA from alignment at P-littoralis_Contig21:64584..73260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig21.13.1 ID=mRNA_P-littoralis_Contig21.13.1|Name=mRNA_P-littoralis_Contig21.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8677bp|location=Sequence derived from alignment at P-littoralis_Contig21:64584..73260+ (Pylaiella littoralis U1_48)
GTCAGTAGTCTAAAGAGCAGAGAGGCAGATTTATTAACAGAGTTAGAGAG TCTGGGTCTGGAGAGAAGGGAAACGCGGGCGATCTGCAGATCTGGTGATC GAGTGCGTACGCTGTCCACGGAAGCCAGGAAGCAAAAGCTGTTGGACGCA CAGAGGAACTGGTTCTGCTTCGACTTGACTTGTGGAGATAAGAAGGCCAG GGGCAGAAGGACTCGGATTAGAATCAAATCCGACCACAACGCTGAACACC CGTGAGAGGATTAAACACATCACCATCATCACCAGCCGCAAAAGCGTCGA TGTCGATGGGTAACAGACGGACTGGTAGCCGAAATCGGCGGTCGACGACG GTGGGCTTCGCTGCACTGGTCGCGTTTTCGCGACGAAGCGCGGAGACCCT AGCTTCTGATGACACGTCCTCCGACCCATACCCATACATCGGGTGCTACA AGGATGAAAAACAACGGGCGATGTCGTTCGTATCAAGGGTCGAAGTGACA AAGGAGGGCTGCGCGGCTTTGTGCATAGACGAAAATACCCCGTACTTTGG CCTGCAGTACGGGAGCGAGTGGTGAGTTGAGTTGGGTTTTTGTGACGTTA TAAATCAAGGCTTCCTCCCTCGCTGCTGGTGTTGCCGCGCCGACAACTCG TTCTTCGCCGTTTTTGACCTCGACAAAGTAGTCACCCGCAGTAAAAGTGT GTGTGTGGGTGTGTGTTTGCCTACACGTGTGCACGTCTACCACACAGCCT TTTAGTGTTTGGCGTGTGCTTTTCAACGCCACCACCAATAGAACGCTCAG CAATTCAAGAAAAGAGACCCAGGACAGAGGCTCTGCTCGTCTCTCGATGA AGTTTTTTAAAATCAGAATCTATTTTGAAATTTGCCTCTGATTTCCGTCA CATTTATTTATTCCACCATCTCTTTCACTCCCTTCTCTAGCCGCCATTCT CTCTCGCTCTCCCCCGCTCTGCTTCTATCTCTGTTTGCCTCCCTCTCTCC TTAACTTTCCCTCCCCGTCTCTCCCCTACTATATTTCGCTCAATCCCTAT CTCTCCATCTCCTCCACTCCTCTGCCCATTCTTCCGTTGATGCCCTTTTG GTGAAACTCTCACATAAGCTGGTGTCAATCAGATTTATATGAAAGTGGAA GGGACATGATTAATTCTATCTGAACATACGACGGGGTCCATACGCACACA GCAAGAGTGTGAGCTGTATGATCCCGCATCACATGTGTATCATACAGCAG CAGTATCATATGTCTTGCCATGCGATACCCGCCTTTTTGCCATAGCCCAT CTGATTTGTGTCATATGACGAACAGCGGATTTACTGCTGTGTCCATCTTG CGATGAATCGGGAGAGACGACTCTGACGACGTGGTGGTTTTCGTTGGTAG CTCCTTCTAGTCAACACCCTTCCGTGGGTCTTGTCATCCCGACGTCGGTC ATGTTCTGCCGACGGACTCAAACGAAGCGTAGTTACCCAATGTTGCCGAA AGAAGGTACCCCTTTCTTGCCGTTATATAATACTTCGAACTCGTACATCG TTGTTGTTATTGTTGATTCTCACATTAGCTCACTACCGCCGCAGTATAGC CCGTGGTCACAAACCAGGCACCTATCGTGCTAGGAGGAAAAATAAACATC GTGAAGTACTTTGTATCAGGTACTTCTGCAATCAGATACCATGCGTGCAG TGTGTGTGTTGTCATCCTCCCTTTAATTGGACGCCACTCTACGCCATTCG GGTAGGCAGTCGCTGCAACCTAGGTCACACAGAAGGAAGTCAACACAGGA GTGGCGTGACGTAGTCATTTCGAACTCTTGCAGGCACTGAAAATCACGAC GTCCATGATACAATCGCACTCAGTTTCCCGAGATCCCCATGAATTCTCTC CATCCGTGCCTGCAGACGAAAGCAATGGCTGCCTTGACTTCTCTTTCTGT AGGAGGCTGAGAAATCGAAAAAAAAAGAGGGAAAAGAGGAATCGAGCGGT CCGAGAAGGAATCATTTATTTTGTCTCCGAGTGTGTGTGGTGTATGTTTG TTGTCATTCCATGCATTTATTCTGGGCAGCAGTCTACACCTGTCGGTATG TACGAAATGGGTGCATCAGCCGGGGGCACACAGCAGTAGAAAGGTCACAC ACGAGCTTTTCCACTTTTTATTTTGTTTTATTCCCCAAACCTTACCCCTG CGGCACTGGCTTGTGGGTTCAATGGGAGTCGGGTACAGCAGCCCTTCCCT CTCCAGTAATTCGCTTTCCACTGCAAAGTCTCAAGAAACGCTCTGAGAAA GAATCAAAGCCGCGACCTTGACAACTAGCAGTTTATTGAGGGAACCGCTA GACCACCGGGGCGACGAGAACGAAGTATATGACGTCCTTCACTTGTACCA AGTACAGCAGTACAGTATTCTGTAAAGAATGTGATGTCGATGAACTTACG ACGGATGATGACGAGCGGATACGATCATTTTTCATACTGCTGAATTCGGT GTCTTTCCGTCTTTTTTGTCACTCCTCTGTGACTTTTTATTTCTTTTTAT TTCATTTTGTGACTTGGCCCTGGACCAGGCTTCGTTTTCTTGCTTTCTTG TTTCTTGTTCCATGTTTGCACAGCGTTATGTGTTTTGTCGGAGTCCGTCT ATGTTTTTGCCGGAGTCTTCTTGTCGTGCCTTTATTTGGTGGACTGAGGG GATCTCCCGAGTGGTACTATATACCTCTTCTGGGGCAAGCAGCCTGTGAC CACGGAAATCGTACCTGATCGGTCGAGTACGGACATTAGAAGGTACTGAG GAGAGATCGGAACGGTTTTTTAATGTGAAGACAACAGCAACATTTATTCC GCTGGACACCAGTCTGCACGTTTCGGTATATTAAGTGCACCAGCTAAGGT CACACAGAAAGGTTAAACGCGAGTTTTTTTTTTTAATTGCCCATACCTTT CTTTCCTCCTGCGGTTTTTGCCTGAAGTTTTCAATGTGGGTCGGGTTCAG TAATCCCTTCCCTCTGTTTACTCACGATGTGACTATAATACAGCAGTACA AGTATACAAGTGATATTTTACTCCTGCACAGAGTGCAATGTCTTAATTTC CTGTGATCGCCTCCTACTATCGTAGTTCCAAGTCGTAGCCCCCCCCCCCC CCCGCCGCCCCCGAAATCGCCTAACGAGGGTGTGTACGTCGAAAGCGTTC TGGGGTTTAAAGTTTAAAAGACAAAATCCGGGGGGTACTCGGCATCATGG TGGGAAGACACGTGTCACAAGTCGTCGTTGTCCAGAGTGAAAGGAGTGGG CTGCATGTCTTAAGTCGTGAGTGTGAAAAGACGGTGATACCGGTACACGG CCACAAGATAGGCACGGAGTGCGGGGCACAAGAAAGAGGTTGGAGCAGTG GGCCTTTGAGGGCTAGTTGTTCTCGGGGTGTTGGAATGATGACAGGGCGG GTGGAACAAGCCCCTCAAGGCCTCACATGTTTACTGCATTGTATATAATC CAAAATGTCGTATATAGGCCCGGGGTAATTTTTTGGAAGACCCCCCTCTA CCCGTTGATTCTACTGGTACTTCTCATAAAGCCCGAGCAGGCAAGAGAGC GATCGTTTTTCGCCGATTTCCTGATCTCCACGATGGCCTCACCGATGCAA CGACTACAAATTGACCGCTCCCGCTTAGTCAAAGGTCTCGTATGCAGCGA CATACAAGGACTTGGTTGTTCTTTATTCGTCCAGTTCGATCAGGCCCACA ACGAAATATTGTAAGAGTCGGCGTCAGCCGTGTGAGTCGTATGGGGCCCA AGACGATACCATGTGCGCGATGCCCGTGGCGGTTTACACCTGAACTTGAG CAGAAAAGCGAAAAATAATCTCATCCGTTAATTTTGTACGTTAATGTTAT TTTATACGAGGTACTTCGTACTCCGAAGTACTTCGAAGTACTGCTCTCCG TACTGGAATAGAAGTACATCATCGGTCATTTTTACCGTGCGTGGCAGAGC TAAGCATCATCCACAATTCTGGACGTTCCCCACTGCGGTGTGAAATGATC ACAATTTTTAATCGAAGGTATAAACGACGGACATCAATGTATACTCAACA ACGGCCATGTCTTATGTTATTGATGATACAAGCAGCTGTTCTGGAATTGC CTACGAATTCCCGAAAACAGTTGTTCCTTCAAAATTGATAGTTTTACGTC TTCCACCTCTTCTGGCGAGGAAGCGCTCATCGTCTGACGTTGCCAACATC TTCTTGTGTCGCAAAACATCAATCGGTCAACATTCATACCTCGGAGTACG ATGTAAGGTACACTGCCTGTAGAGGCTAGCACACGGCAGGGCAACAGCTG TAGTGTGAGTGTCCCGTTTTCCTCTCTTCCCGAGAATCACAGAGGAGGCA CAGATCTCCTGCACTCACGAAAAGGCTTGTTTGTACCAGGTAGAAAGTAC ATCGTACGGAAAACCATCACTTCGCCAACATCTTGCACAGTACAACGGGG AGTCGCAGGCGCGACTCACTCAAGCAGTAGTGCCACCTTACGCGAGCCCC CCCCCCCCCCCTCTTGATGAATGGATGCTGAAGATTAGTTTACCCCCAAA TTCTTGAAATATCTGTGCGCCGGGAGTGTGGCAAAATGAGTCACCCGTCT ACCGTTTCCTAAGCTTGACCCCATCCCTCCCCCCCCCCGCGCGCCTTACT TACGGCCTCCATGTGGCGAACACCATGAATGACAACCATCACATGATACG AACGAGCAGCTTCTGTGGAGACAATTACGACAGGTATGGAGCGGTCGAGC AAGACGATGGCTACGACTGCGACATGACGCTTGAGTTTGAGCCCGACGTC GAGGCTGGCGGCAAGTGGGCCATGTCCATCTACAGTACTGATGCGGGCGC CGCGGTAAATGCCATCACCGCCTCCTCGGGCGGGACAGGGGCCGGGTCGA CCCAGGAGGGGACGACCACCGTCGAGAGTTCCACGCGAGACGCCGTCACC AGTGGGAAGCGCGCCTTCACCGTGGTGAACGAGTGCTCGCAAACGATCCG CATAGGTTCTACAGGGGGACGGTGAGAATTTTGCGGACGGGGGGGGGTCC AAGGGAGCAATGGAGGGGGGGTTTATGGCAAGGGTGGCACGGTTCTCCTT TGGTTGATTGGGCAATATGATACACGGGGCCAATCGTACATGCACGCCCA TTTTTATTTTGGTGCAGCTCTACGTGCTTTTACCGGAACACCGATGCGTA GGTCGTGTTTATTTTTCATGGGCATGCGGTAATGCCTTCCACGTCCAACA ATGTTACACCTCTCCGTGAGACGGCCGCATTTACTTTTTGCTATCCTTTG GTCACATATGTCGACACCGGGCCACGATTCAAGCAACGCACGAAACGCCT GTCACTTTTGAACAGTGGGAGCAGCGCCAGCATAGTGCAATTTGTCGACA GTCTTCCAGCTTATAAACGCACACAGAGCAGCAGGGTCAAGATGCCCCCC GGGATCTCAAGAAATATCCCCAGGAGGGGCAACAATGACTCGTCCCCCAT TTATTTCCTAATATATTCGTACATTATTTTTTTCGAAATTGGCCACTTTT TTATACCTGGACATGTTTTTTTCTGTCCTTTCTCGGTGACGGTTCGGATG TTCTCTGATTTGGAGAAAAAAAATCAGAATCGTAAGTTTGACTTTGTGAA AGCGCAACGCTAGTTCAACCGGCCTATTTTTTGGGACCAAATGCGTTGAA GCGTTCAAGCTGAAGTACAGCTTTTTCGCCTTTTTGCACCTTTGGTGGCA TCCATGAACATCCCAAATCGTCGATCACATATAAGAGAAGCACGTAATCG ATGTCGAAGTCCCTCGAATGACCTCTCCGACCGTGTAAGTATTGTGACTC TGGCGATCACGTCAACCACCACAACAACACGCCACACACAGGATTTCCTT CGAAGACGCGGAAGACGACTCCGCCGATGCGTGCGCCGCTTTTGGGCCCG CGGGCGTCTATAACAGCGGTGAGTTGGGCAGAGGTTGCTACTGGGACTTG CCCGCCGAAGAAGGGGGCAACACGGACCGCATGCTCGAACCCGGCAATTA TTTCCGCTACTACCTGGCCGAAACCACAAGCAACACGCGCTGGAGCGGCA CTATCTGGGCCGGTACGGGCTGCGACAAGATCGACGGGTGCGCGACGGGG TTCTGCTACAACGAAAACACGGATCACGTCTGCCCGGCGTACATCGGCCC CGGCGGCTCCACCAGCAAGGGGGAATTCACGCTGAGCGATTTCGGCAAGG ACTACTACGACATCTCGTTGATCGACGGCGCGAATCTGCCGATGGTGGTC GAGCCCGACAACCCGGTGTTTCCGTCGAAGACCCAGTCCGACGCGCAGAA CATCTTCAAAGTAAGTGTGTGTACGTGCGTACGTGTGTGTTTTTTTTGTG TCTCGGTTCGATTGGTGGAAAACCCGCCGCTCACCTGCGATGATGAAATG AAAAGCATGTCGAAATTTCGAAATTTCGACGTTTGTAATCGGGCCGAAAA CCCAAACGTTTTCCTGGTGTGAAAAAGAGAAGGACGGGGCTTTTGGGTGA CGCATGTTATCTGTCTCACTCGTTTTTCCGGTGTCTTGTATGCCTGTTTT CCTCTCACCCCTGCGACTGAAAACAGTACCAGTGCGGATCCCCCGGCGCT ACGTCGGCCCACCTCGACAGCCTGGCCGATTGTTCGTGGTCGTTCGATAC CACCGTGAGCTTGTACGAAGAGGACCTGAGCAAGTACGTCCGGCTTGTTC TTCCCGACTATGACAAAGTGAGTCTCGCATCCCCACCGACCGACCGCTCA CCGACGTTTGTTAGTGGCAAGACTCTCCGTTCCATGTTTGTTGCGACAAG CCCTCTTTTCGGAATTTTTATGTCTGTACACCAAATCCTCCGACCAAACT CCCTGCCCCCCCCCCTCAAAATTCGAAAAGAGAGAAGCGTTTTACTCCGC ACTTTGTTCGCATTGTCACCTCGCCCTCGCTCCCGGCTCTGTTGTCTCTC TCTCAACCAGAGCACAGCCTGAACTTACCTCCCCCGCCGGCCCTTTTTGG TCGTTGCGTTTGCAGCTGGTCTCCTGCGATTCGGATGATGAATGCGACGA AGTCTGCGGTGTGCACCCCAAGCGCTATCAAGACGGCTCCTTTATCGGCG GGGTGGAGGGGGGGTCCTGCGGGGAGCACGTGGGGTGGGTTAGCGCGGGC GGGGCCTGCGCCGGCGGCTGGGACACGGGCGAGTTCCCCGACTCCTTCCC GTACTACTGCGGGACGGCCGCTGCTGATGACAATGAGATGGCCAACATGT ACGGCTGCTTTGGCGGAAGCCTCGGGCACTCGGGCTACACCGCCGGCGCC ACGAACAGCTCCTGCGGTTGCCCGGACTGGGAGGGTGATCCGTTTTACTT GACGGTGAGCAAGGGACGCACGGGGGCGTTTTTACCCTTTGTTTGCTGCC GTGCACGTAGCTTTTACATTTTTCTTACTGTTAAGTCAACATCCAGGAGA TCTTCCTGTTTATCCTGTAGGTGAAAATAACGCATGACATGGTTTACATT GGTGTATTATGTGTGTATCGATACTAGTAGTACTTGAAAGTACTTGAACA TGCAAATGTGCAAAGTACTACTGCAGTACGATTTATGAAGCGTGGTGATT TCTCTCGCAACCTGTTGTGCCGTTTGTAATTAAAATTCATTCCCTCTCCC CCCTCCGTTTTTTTGTTACTTGTTCACCCGTCCGTCCGTCCGGACACCAT GCAAAAATCAACGCAGGCCCCCGCGATCTCCGATTGCCAAGCCACTAACC CCGAGTGGATCGAGTACGCCTTTCCCTGGGCGGGGCTTCTGAAGAAGGCG TGCCCCACGGCCTACACCTTCCCGTACGACGATCAGACCTCGACCTTCAC GTGCTACGACGGGGAGGGACCGGGAACGGAAAACTACGTCAACACGCAGA GCTGTGAGTCCCTCGTTTTACATAGCCACTAAAATTTTGTTTTCCCTCGT GTTTTTGATTGACTCGTGCGAGCGATGCGGTATTGGCGTTTGGCAAAAAA AAAAATCCTTTGCCGTCCTCGTTCGCCCTGACCCTTATTTTTGAACGATC GCGGGTGGATACAGGAGTGAATGTCGTGCTCTCATGTACCACACAAAACG CCGGTTTCTGCCCTTCTACCCTCCCCTGGACCTCCGTCCGCTAATAAAAA AACGCTCCTTCCCCTTTTTTTGCTTTGTTTTTGTTGGTGTTGTTGCGCGT GCTCGTTGCTGCAACGAGTACAGACACCATCACTTTCTGCCCGGGCGACT CGGAAAAAAACATGTATGGATAAACGAAACGCCTCTTTTTGTTTCCCGCG CGTGTGGCAACTTAACCTCTGGGTGGATACGCGATACGGATGTGCGTGGC GATATATTTTGCGCGCGTGTTTAGTTTTCTGCCTGCTTTGAGCCACAAAG AAAGTGCACCAGATACATCCCAGAGTCTCAGTGATGTTTTGTCTTTGTTT TTACGCCAAAATTTGTGTTGGGGGAGAGGATGGGAAGATGTCAGAGGAGA CTTTTCGGACATTTTTACACACGGACGACGTTGGTCTTGGTGTTTGCTTG ACGACTTTAGCAGGGGGTAAAGCGGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig21:64584..73260+

>mRNA_P-littoralis_Contig21.13.1 ID=mRNA_P-littoralis_Contig21.13.1|Name=mRNA_P-littoralis_Contig21.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1770bp|location=Sequence derived from alignment at P-littoralis_Contig21:64584..73260+ (Pylaiella littoralis U1_48)
ATGTCGATGGGTAACAGACGGACTGGTAGCCGAAATCGGCGGTCGACGAC
GGTGGGCTTCGCTGCACTGGTCGCGTTTTCGCGACGAAGCGCGGAGACCC
TAGCTTCTGATGACACGTCCTCCGACCCATACCCATACATCGGGTGCTAC
AAGGATGAAAAACAACGGGCGATGTCGTTCGTATCAAGGGTCGAAGTGAC
AAAGGAGGGCTGCGCGGCTTTGTGCATAGACGAAAATACCCCGTACTTTG
GCCTGCAGTACGGGAGCGAGTGCTTCTGTGGAGACAATTACGACAGGTAT
GGAGCGGTCGAGCAAGACGATGGCTACGACTGCGACATGACGCTTGAGTT
TGAGCCCGACGTCGAGGCTGGCGGCAAGTGGGCCATGTCCATCTACAGTA
CTGATGCGGGCGCCGCGGTAAATGCCATCACCGCCTCCTCGGGCGGGACA
GGGGCCGGGTCGACCCAGGAGGGGACGACCACCGTCGAGAGTTCCACGCG
AGACGCCGTCACCAGTGGGAAGCGCGCCTTCACCGTGGTGAACGAGTGCT
CGCAAACGATCCGCATAGGTTCTACAGGGGGACGGATTTCCTTCGAAGAC
GCGGAAGACGACTCCGCCGATGCGTGCGCCGCTTTTGGGCCCGCGGGCGT
CTATAACAGCGGTGAGTTGGGCAGAGGTTGCTACTGGGACTTGCCCGCCG
AAGAAGGGGGCAACACGGACCGCATGCTCGAACCCGGCAATTATTTCCGC
TACTACCTGGCCGAAACCACAAGCAACACGCGCTGGAGCGGCACTATCTG
GGCCGGTACGGGCTGCGACAAGATCGACGGGTGCGCGACGGGGTTCTGCT
ACAACGAAAACACGGATCACGTCTGCCCGGCGTACATCGGCCCCGGCGGC
TCCACCAGCAAGGGGGAATTCACGCTGAGCGATTTCGGCAAGGACTACTA
CGACATCTCGTTGATCGACGGCGCGAATCTGCCGATGGTGGTCGAGCCCG
ACAACCCGGTGTTTCCGTCGAAGACCCAGTCCGACGCGCAGAACATCTTC
AAATACCAGTGCGGATCCCCCGGCGCTACGTCGGCCCACCTCGACAGCCT
GGCCGATTGTTCGTGGTCGTTCGATACCACCGTGAGCTTGTACGAAGAGG
ACCTGAGCAAGTACGTCCGGCTTGTTCTTCCCGACTATGACAAACTGGTC
TCCTGCGATTCGGATGATGAATGCGACGAAGTCTGCGGTGTGCACCCCAA
GCGCTATCAAGACGGCTCCTTTATCGGCGGGGTGGAGGGGGGGTCCTGCG
GGGAGCACGTGGGGTGGGTTAGCGCGGGCGGGGCCTGCGCCGGCGGCTGG
GACACGGGCGAGTTCCCCGACTCCTTCCCGTACTACTGCGGGACGGCCGC
TGCTGATGACAATGAGATGGCCAACATGTACGGCTGCTTTGGCGGAAGCC
TCGGGCACTCGGGCTACACCGCCGGCGCCACGAACAGCTCCTGCGGTTGC
CCGGACTGGGAGGGTGATCCGTTTTACTTGACGGCCCCCGCGATCTCCGA
TTGCCAAGCCACTAACCCCGAGTGGATCGAGTACGCCTTTCCCTGGGCGG
GGCTTCTGAAGAAGGCGTGCCCCACGGCCTACACCTTCCCGTACGACGAT
CAGACCTCGACCTTCACGTGCTACGACGGGGAGGGACCGGGAACGGAAAA
CTACGTCAACACGCAGAGCTACACCATCACTTTCTGCCCGGGCGACTCGG
AAAAAAACATGTATGGATAA
back to top