mRNA_P-littoralis_Contig21.158.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig21.158.1
Unique NamemRNA_P-littoralis_Contig21.158.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:601211..601604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size396
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.320959-UTR-P-littoralis_Contig21:601210..6013011680790017.320959-UTR-P-littoralis_Contig21:601210..601301Pylaiella littoralis U1_48UTRP-littoralis_Contig21 601211..601301 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.3302484-CDS-P-littoralis_Contig21:601301..6016041680790017.3302484-CDS-P-littoralis_Contig21:601301..601604Pylaiella littoralis U1_48CDSP-littoralis_Contig21 601302..601604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.158.1prot_P-littoralis_Contig21.158.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig21 601302..601604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig21.158.1

>prot_P-littoralis_Contig21.158.1 ID=prot_P-littoralis_Contig21.158.1|Name=mRNA_P-littoralis_Contig21.158.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
KTYHKRNPQRRLRNRQLQRIAYVLEPRCSIHQAATGPPKGFFACRDTRGT
HARYSRLGEVFLGVDGKYEVGQVQVFFHTLRARLPHHSAHTLTPSLWGRF
*
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mRNA from alignment at P-littoralis_Contig21:601211..601604-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig21.158.1 ID=mRNA_P-littoralis_Contig21.158.1|Name=mRNA_P-littoralis_Contig21.158.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=394bp|location=Sequence derived from alignment at P-littoralis_Contig21:601211..601604- (Pylaiella littoralis U1_48)
AAAACTTATCACAAACGCAACCCACAGCGTAGACTTCGCAACCGGCAGCT
ACAGCGGATCGCCTATGTCCTAGAACCCCGTTGCTCAATACACCAAGCGG
CCACCGGTCCCCCCAAGGGGTTCTTCGCTTGTAGAGATACGCGGGGGACC
CATGCAAGATACAGTCGCCTGGGAGAGGTGTTTCTAGGGGTCGACGGGAA
ATACGAGGTAGGGCAAGTACAAGTTTTTTTCCACACGTTGCGTGCCCGAT
TGCCTCACCATTCGGCGCACACGCTTACTCCCTCCCTGTGGGGTCGATTT
TGACTCTTGTTGTCCGGTGGTGCTAGCGACGGCAGTAGCTGATGCGGAGG
CTGCCGACGACGATTGTTCGTGATCTTCTCCCGCCCTGCCACGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig21:601211..601604-

>mRNA_P-littoralis_Contig21.158.1 ID=mRNA_P-littoralis_Contig21.158.1|Name=mRNA_P-littoralis_Contig21.158.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig21:601211..601604- (Pylaiella littoralis U1_48)
AAAACTTATCACAAACGCAACCCACAGCGTAGACTTCGCAACCGGCAGCT
ACAGCGGATCGCCTATGTCCTAGAACCCCGTTGCTCAATACACCAAGCGG
CCACCGGTCCCCCCAAGGGGTTCTTCGCTTGTAGAGATACGCGGGGGACC
CATGCAAGATACAGTCGCCTGGGAGAGGTGTTTCTAGGGGTCGACGGGAA
ATACGAGGTAGGGCAAGTACAAGTTTTTTTCCACACGTTGCGTGCCCGAT
TGCCTCACCATTCGGCGCACACGCTTACTCCCTCCCTGTGGGGTCGATTT
TGA
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