mRNA_P-littoralis_Contig21.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig21.10.1
Unique NamemRNA_P-littoralis_Contig21.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:53675..54312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size638
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.1754048-UTR-P-littoralis_Contig21:53674..539291680790017.1754048-UTR-P-littoralis_Contig21:53674..53929Pylaiella littoralis U1_48UTRP-littoralis_Contig21 53675..53929 -
1680790017.199126-UTR-P-littoralis_Contig21:54262..543121680790017.199126-UTR-P-littoralis_Contig21:54262..54312Pylaiella littoralis U1_48UTRP-littoralis_Contig21 54263..54312 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.1879523-CDS-P-littoralis_Contig21:53929..542621680790017.1879523-CDS-P-littoralis_Contig21:53929..54262Pylaiella littoralis U1_48CDSP-littoralis_Contig21 53930..54262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.10.1prot_P-littoralis_Contig21.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig21 53930..54262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig21.10.1

>prot_P-littoralis_Contig21.10.1 ID=prot_P-littoralis_Contig21.10.1|Name=mRNA_P-littoralis_Contig21.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
MHLLMPSGDEQLRASVATQATEIAHLASAVKTLQQQRKTTRPRSRSTDKA
GRKDGAQRDGKQAKTGKTNFGPCTYPGCHRPETHSTDRCRVRKEDINRGY
LRQPTTKSDE*
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mRNA from alignment at P-littoralis_Contig21:53675..54312-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig21.10.1 ID=mRNA_P-littoralis_Contig21.10.1|Name=mRNA_P-littoralis_Contig21.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=638bp|location=Sequence derived from alignment at P-littoralis_Contig21:53675..54312- (Pylaiella littoralis U1_48)
AACTTATCTCCAGGAATCATCGGAACGGCACGGAGCCACCGAGCTGGCTC
ATGCACCTCCTTATGCCCTCCGGAGACGAACAGCTGCGTGCCTCTGTGGC
AACGCAAGCTACGGAGATCGCTCACTTAGCTTCTGCAGTCAAGACACTTC
AGCAGCAGCGAAAGACAACACGCCCGCGGAGCCGCAGCACCGACAAAGCG
GGAAGAAAGGACGGAGCACAGCGGGATGGAAAGCAGGCCAAAACGGGTAA
AACCAATTTTGGCCCATGCACCTACCCGGGGTGCCACCGCCCTGAAACCC
ACTCCACTGATCGCTGCCGTGTCCGTAAGGAAGACATAAACAGGGGTTAC
CTACGCCAGCCCACTACAAAATCGGATGAATGATGGGGCCCGGTTTGGGT
TCCCTCGCCCAAAGGGATGAGTAGCAGTACCACGATACCAGTAGAGCCAG
CAGCCGGTAGTTCAGCAGCAACAGTTGCGAAAATACAACCAGCAGCAGTT
TCAACTAGTAGTGGGAAACAAGTGAGGGATAAGCAACGCCGTTTTAGTAG
CGTTGACCCTCGGGCAGGCAGTTTTCTAGGAACATCAAAAAATAACCCGG
TCACTAGCATGAACCAGGTGGGAAGACAAAATGTTGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig21:53675..54312-

>mRNA_P-littoralis_Contig21.10.1 ID=mRNA_P-littoralis_Contig21.10.1|Name=mRNA_P-littoralis_Contig21.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig21:53675..54312- (Pylaiella littoralis U1_48)
ATGCACCTCCTTATGCCCTCCGGAGACGAACAGCTGCGTGCCTCTGTGGC
AACGCAAGCTACGGAGATCGCTCACTTAGCTTCTGCAGTCAAGACACTTC
AGCAGCAGCGAAAGACAACACGCCCGCGGAGCCGCAGCACCGACAAAGCG
GGAAGAAAGGACGGAGCACAGCGGGATGGAAAGCAGGCCAAAACGGGTAA
AACCAATTTTGGCCCATGCACCTACCCGGGGTGCCACCGCCCTGAAACCC
ACTCCACTGATCGCTGCCGTGTCCGTAAGGAAGACATAAACAGGGGTTAC
CTACGCCAGCCCACTACAAAATCGGATGAATGA
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