mRNA_P-littoralis_Contig21.182.11 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig21.182.11 vs. uniprot
Match: D7FNK3_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK3_ECTSI) HSP 1 Score: 236 bits (603), Expect = 1.860e-70 Identity = 143/228 (62.72%), Postives = 164/228 (71.93%), Query Frame = 2
Query: 293 QTPFQDAPLDLDFCPLFYLSRRVAVDARLAEIRAASETKLVSLVGNAWLANAHTVCRGLNWERSSVRHLQAIAAGLGGPAVAAVLAALCLNYKHFGGGLPDLLLMRAVRTGRDTRAAAEEGDTSAKESESAGVEAAPXXXXXAPSAEAEVST-----PERLASWLGMESGAVFDADEKNGGGSQPTGR---GGSGRGRSGGANNRAPPPPFEANDMNGLRVETWLLEV 952
QTPFQDAPLDLDFCPLFYL+RR AVD RLAE+RAAS +LV+LVG+AWLANA TVCRGLNW+RSSVRHLQAIAAGLGGPA+AA+LAALCLN+KHFGGGLPDLLLMRAVRT DT AAA ++ + A +AA A AE+EVST P SWLG++S FD D GG +P GG+G+ R G R F+A DM GLR+ETWLLEV
Sbjct: 77 QTPFQDAPLDLDFCPLFYLNRRTAVDTRLAELRAASAAELVALVGDAWLANAGTVCRGLNWDRSSVRHLQAIAAGLGGPAMAAILAALCLNHKHFGGGLPDLLLMRAVRT--DTNAAAVAAAGEGRDGKIAKGKAAAEAAPPAFEAESEVSTVRFSGPAAFVSWLGIDSEVAFDVD---GGDERPXXXXXDGGNGK-RGKGVPMRXXXXXFKAADMAGLRLETWLLEV 298
BLAST of mRNA_P-littoralis_Contig21.182.11 vs. uniprot
Match: A0A6H5L3R1_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R1_9PHAE) HSP 1 Score: 245 bits (626), Expect = 8.580e-68 Identity = 140/220 (63.64%), Postives = 161/220 (73.18%), Query Frame = 2
Query: 293 QTPFQDAPLDLDFCPLFYLSRRVAVDARLAEIRAASETKLVSLVGNAWLANAHTVCRGLNWERSSVRHLQAIAAGLGGPAVAAVLAALCLNYKHFGGGLPDLLLMRAVRTGRDTRAAAEEGDTSAKESESAGVEAAPXXXXXAPSAEAEVSTPERLASWLGMESGAVFDADEKNGGGSQPTGRGGSGRGRSGGANNRAPPPPFEANDMNGLRVETWLLEV 952
QTPFQDAPLDLDFCPLFYL+RR AVDARLAE+RAAS +LV+LVG+AWLANA TVCRGLNW++SSVRHLQAIAAGLGGPA+A++ AALCLN+KHFGGGLPDLLLMRAVRT DT AA ++ + A +AA A +EVSTP SWLG++S FD D N P GSG+ R G R PPPF+A DM GLR+ETWLLEV
Sbjct: 1238 QTPFQDAPLDLDFCPLFYLNRRTAVDARLAELRAASAAELVALVGDAWLANAGTVCRGLNWDKSSVRHLQAIAAGLGGPAMASISAALCLNHKHFGGGLPDLLLMRAVRT--DTNAAVVAATGEGRDGKIAEGKAAAEAEPPAFEVVSEVSTPAAFVSWLGIDSEVAFDVDGGNERPPPPPTDRGSGK-RDKGVPKRPSPPPFKAADMAGLRLETWLLEV 1454
BLAST of mRNA_P-littoralis_Contig21.182.11 vs. uniprot
Match: L1J0F1_GUITC (Fanconi-associated nuclease (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J0F1_GUITC) HSP 1 Score: 105 bits (261), Expect = 7.050e-23 Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 2
Query: 296 TPFQDAPLDLDFCPLFYLSRRVAVDARLAEIRAASETKLVSLVGNAWLANAHTVCRGLNWERSSVRHLQAIAAGLGGPAVAAVLAALCLNYKHFGGGLPDLLLMRAVR 619
TPFQDAP+DLDF P FY R + AR+A++ S+ +L+ + W + T+CRG +W S+ LQ +A LGG ++A+ ALC+NY+HF GG+PDL+L+R R
Sbjct: 52 TPFQDAPIDLDFHPFFYKRREALILARIADLELWSDQQLLLELRERWQQSFGTLCRGASWGSCSLSFLQLVALCLGGRRISAICRALCINYRHFSGGMPDLVLLRGRR 159
BLAST of mRNA_P-littoralis_Contig21.182.11 vs. uniprot
Match: A0A482R5S3_9EURY (VRR-NUC domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R5S3_9EURY) HSP 1 Score: 90.5 bits (223), Expect = 1.250e-15 Identity = 49/113 (43.36%), Postives = 67/113 (59.29%), Query Frame = 2
Query: 296 TPFQDAPLDLDFCPL-FYLSRRVAVDARLAEIRA-----ASETKLVSLVGNAWLANAHTVCRGLNWERSSVRHLQAIAAGLGGPAVAAVLAALCLNYKHFGGGLPDLLLMRAV 616
TP+ DAPLDLD CPL FY RR A+ E+ A + L++ +G W + V RG+ W S++ LQ +A G+GGPA A ++ A+C +YKH GLPDLLL R +
Sbjct: 464 TPYTDAPLDLD-CPLLFYAHRREAIVRLTTELAACGADDSGRAALIARIGGTWRKHKGCVARGMRWGSFSLQLLQLLAVGMGGPACAMLVDAMCFDYKHLASGLPDLLLWRVL 575
BLAST of mRNA_P-littoralis_Contig21.182.11 vs. uniprot
Match: A0A7S3HLV0_9STRA (Fanconi-associated nuclease n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLV0_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.410e-13 Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 2
Query: 296 TPFQDAPLDLDFCPLFYLSRRVAVDARLAEIRAASETKLVSLVGNAWLANAHTVCRGLNWERSSVRHLQAIAAGLGGPAVAAVLAALCLNYKHFGGGLPDLLLMRAVR 619
TPFQDAPLDL FY +RRVA+ R+A+I + S +L++ +G + + CRG++W ++ LQ +A +G VAAV AL +NYKHF GG PDL+L+R R
Sbjct: 260 TPFQDAPLDLGHRS-FYRTRRVAIQKRIAQIASFSTPQLIAELGVVYRKHYGENCRGVHWG-VTLPLLQLMAVCMGSATVAAVCNALSVNYKHFTGGAPDLMLVRVQR 365
BLAST of mRNA_P-littoralis_Contig21.182.11 vs. uniprot
Match: A0A836CMA8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMA8_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 1.100e-8 Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 2
Query: 461 RGLNWERSSVRHLQAIAAGLGGPAVAAVLAALCLNYKHFGGGLPDLLLM 607
R L W R S+ L AIAAG+GG +A++L ALCL+ +H GGGLPDLLL+
Sbjct: 3 RWLRWGRLSLPQLMAIAAGIGGAGLASLLTALCLDSRHLGGGLPDLLLL 51
BLAST of mRNA_P-littoralis_Contig21.182.11 vs. uniprot
Match: A0A7S4AK23_9STRA (Fanconi-associated nuclease n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AK23_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.740e-6 Identity = 42/124 (33.87%), Postives = 60/124 (48.39%), Query Frame = 2
Query: 296 TPFQDAPLDLDF-----------CPLFYLSRRVAVDARLAEIRAASETKLVSLV-----GNAWLANA-HTVCRGLNWERSSVRHLQAIAAGLGGPAVAAVLAALCLNYKHFGGGLPDLLLMRAV 616
TP+Q AP DL C Y R+ ++D L ++ + L S V W N+ H L + VR L +AAGLGG +A++ L +Y+H+ GGLPDLLL+RA+
Sbjct: 670 TPYQGAPFDLHVGAEQIDSTGLGCGGIYSRRKSSIDDFLGKLSSLDGEGLSSFVYDSINSRVWYTNSLHRPDLVLESDLKQVRTLSMVAAGLGGKLLASIFRCLFFDYRHYSGGLPDLLLVRAL 793
BLAST of mRNA_P-littoralis_Contig21.182.11 vs. uniprot
Match: A0A7S4R0Q4_9STRA (Fanconi-associated nuclease n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R0Q4_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 2.370e-5 Identity = 43/143 (30.07%), Postives = 64/143 (44.76%), Query Frame = 2
Query: 296 TPFQDAPLDLDFCPL----------------------------FYLSRRVAVDARLAEIRAASETKLVSLVGNAWLANAHTVCRG--------LNWERSSVRHLQAIAAGLGGPAVAAVLAALCLNYKHFGGGLPDLLLMRAV 616
TP+Q APLDL L F+ RR ++ L ++ S+ L LV + + ++ + L+ + VR L IAAGLGG ++A+ LC +Y+H+ GG+PDLLL RAV
Sbjct: 1328 TPYQGAPLDLHVGQLMCGRITTKESLKIYDSQEIRLTCAPSRSFFERRRSKIEQYLRKVECMSQQDLCDLVYESVTSQICSLEKDSISTNDTFLSRDLKEVRTLSMIAAGLGGKLLSAIFRCLCFDYRHYSGGMPDLLLARAV 1470 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.182.11 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig21.182.11 >prot_P-littoralis_Contig21.182.11 ID=prot_P-littoralis_Contig21.182.11|Name=mRNA_P-littoralis_Contig21.182.11|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp MRAVRTGRDTRAAAEEGDTSAKESESAGVEAAPAPAPVAPSAEAEVSTPEback to top mRNA from alignment at P-littoralis_Contig21:673178..675965- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig21.182.11 ID=mRNA_P-littoralis_Contig21.182.11|Name=mRNA_P-littoralis_Contig21.182.11|organism=Pylaiella littoralis U1_48|type=mRNA|length=2788bp|location=Sequence derived from alignment at P-littoralis_Contig21:673178..675965- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig21:673178..675965- >mRNA_P-littoralis_Contig21.182.11 ID=mRNA_P-littoralis_Contig21.182.11|Name=mRNA_P-littoralis_Contig21.182.11|organism=Pylaiella littoralis U1_48|type=CDS|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig21:673178..675965- (Pylaiella littoralis U1_48)back to top |