mRNA_P-littoralis_Contig21.114.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig21.114.1
Unique NamemRNA_P-littoralis_Contig21.114.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:437529..442887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size292
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790016.7996316-CDS-P-littoralis_Contig21:437530..4376771680790016.7996316-CDS-P-littoralis_Contig21:437530..437677Pylaiella littoralis U1_48CDSP-littoralis_Contig21 437531..437677 -
1680790016.8098238-CDS-P-littoralis_Contig21:442746..4428871680790016.8098238-CDS-P-littoralis_Contig21:442746..442887Pylaiella littoralis U1_48CDSP-littoralis_Contig21 442747..442887 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.114.1prot_P-littoralis_Contig21.114.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig21 437531..442887 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig21.114.1

>prot_P-littoralis_Contig21.114.1 ID=prot_P-littoralis_Contig21.114.1|Name=mRNA_P-littoralis_Contig21.114.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
DLLSPCFSFVAQPPPDKPQPLSPMKTLLLRDLLLVGICAWKAAAQGQAND
AEGGKEEAPEVAGKLEGAEPSSCDTGSWVPSRALFKWRQVPAEAVG
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mRNA from alignment at P-littoralis_Contig21:437529..442887-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig21.114.1 ID=mRNA_P-littoralis_Contig21.114.1|Name=mRNA_P-littoralis_Contig21.114.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5359bp|location=Sequence derived from alignment at P-littoralis_Contig21:437529..442887- (Pylaiella littoralis U1_48)
GACCTCCTCTCACCTTGCTTCAGCTTCGTTGCACAGCCACCTCCGGACAA
GCCACAACCGCTCTCACCGATGAAGACTCTCCTTCTTCGGGACCTACTAC
TTGTCGGGATCTGCGCTTGGAAAGCTGCAGCTCAGGGGCAGGTTCGTGGA
ACATATTCCTCTGCTGCTGTGTCTGTATCTCCTCGCCTCTCAACAGCATA
TCAATCTCTCCGCCAACAACAGCAGACAGCAAGCAGACAGATAACCAGCA
GCAGTACGTACGCGGAGGATTTTGTTGGCGTAGAGATTGATATGCCTATC
TGTCTGCTATTCCATTTCTGTGTTGCCATGCCTATCATACTACTATTCCT
TATTTCCCCCACTTGTTTTTATTGCGGGTACCGACGACTCGTGTTTGGAT
TCATCTCCAGCAACCATGAACCCGTGGACCTTCCTCTTTTTGTCAGTTGT
TCGCAGAAAAGCATACAATGATACAGCAGTCAGTAGACTATCCATCTGGG
ACAGTCAGTAGACTATCCATCTGGGACTGCTCTTTCATTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTCCT
TGTTCTTCGTCTTCACATTAAAAACCATTCCGATCTCTTCTCAGTACCTT
CTAATGCCCGTACTCCACCGATCAAGTACGATTTCCATGGTCACAGGCTG
CTTGCCCCAGAAGAGGTATATAGTACTCGGGAGATCCCCTCAGTCCACCA
ACTAAAGGCACGACAAGGAGACTCCGGCGAAAACAAAAACGGACCCCGAG
AAATCACACAACGCTGTACAAAATTAGAACAATACACAAGAAAACAAGAA
AAGGGAGCCTGGTCCAGAGCCAAGTCACAAAATGAAATAAAAAGAAATTC
TAAGGTTTCCCCACTGTTTTTCAAGTTATGTTTTTCAAGTTATGAAAAAC
ACTGTTAGGAAAAGCCCCGCCTGTTTTTCAAGTTGAGAAACATGCCGCTG
CGTGCCGGTTCGTAATTGCCCGCCCGGGCCGTTGTCATATACGAGTATTT
TTTTCGCACGCCATCACCACCAAAGCAGTGTTACATCAGGACATTGCAAA
GAACCAGATTCACAGAGTAACTGTTGTAGCTTTCGATTCCCCTCTCTGGA
CACAGAGCACGCGCCACGTACAACGCGTGTAGACAGCTTTTTTATGTAAG
GTCGTCGGTACCTAGCTATCTGCTATGATGGCAAGCCTCCAATGTCCTAC
CAGCAACGTGAGCTCGTCTGATGAGAGAGCAAAAAAAAAATGTGAAGTGC
AACACATCGGAACTGTTTCTCGCCTCCTCCTCCAAGCAGACATCTTTCCG
GGTAACCCGAGACACGGCACGACCCTTCTCATTCTCCCAAGCCCCACATA
GCACTACAAACAACATTAGTAGCAGTAGTGCTGCTGATCACAGAAACGCG
GCGAACCGTCCCTGAGAGAATGTGCGTGTGTGTGCTGTCGCAAAGCTGCT
TGCTTGCCGCTACTGATCTGATCTGATCTGTGCTGCTGCTGCTGCTGCTG
TTTGCGGCTTCTTCTATATCGCTTCTTCTCTGATCTAATGATGTAGTACA
GAGTTGCACAAACATCATATCACACCCTACAGCACAAGCAGCAGCAGCAG
TTAGCAGCAGCACGGCAGCAGCCGCATCCGACCTTTCATAGGGTTAGGGT
TAGGGTTTAGGGCGAGTACGTCTCATACGAAGAGGTGCTGACAGATGGTT
TGACACTCCGACTGCTGCTGCTGTAGCTGTGGTGATATCAAAGGGAAGAG
GAGTTGTTCTCGCGCTCTCTCTCTGTGGGTGTATTGGGACAAGTGTCAGC
AGCAACCATTATTACTGTTTGATTGAAACTACCAAGAAACTACTAGATAT
TCAAATACACAGCCAACGACCAACCGGCACAAAGGCATCATCATAACATG
AAAAACACGAAACCACAAAAAGTTTTTCAGACTTTTCCCGATTTTTTTCA
AGTTATGAAAATCACGTTATGGCGGCGGGGGATTGCTCTAACGTGAAAAA
AAACGCGGGATAACCTCTAACTTGAAAAACAAATCTGTAACGTTAAAAAC
ATCTGTTACGGGGAATCCGTCTATTAAAAGTGAAAAATAAAATTAAAAGT
CACAGAGGAGTGACAAAAAAGACAGGAAGAAACCGAATTCAGTTGCCAAG
GTGTCGATGAAATGGACATCGGGCGTGCTACTCTCTTCACCGGCCCAGTA
ACAGTTTCAGGCAGCGCAAGTACGCAGGCGTGAAGGGGGCAAAAAGGCAG
GAGGGCAGAAACAGAGAACACAAAAAGAAAACTTCGAAGGACGTGGTAGC
TCAGTCCACGGTAACTCAACAAACAGGGGGGGGCGTACTGATGCAGTGAG
GAAACGGATGAGAAGGGTTAGTGCTACTTGTATGACAGCAGTGTCAATCA
ATCTGGTGCGTATGCCGTGCTACTCTTTCCATCAATTCCCTCTTGCTCTC
CTCTGCCGCCGTCGTCTCATCCTCTCTTACTTGCGTATCATATATAAAAG
CCTCGTACTCTTGCTGTGTAGTCTGCACCTTGTTTCGATGATGCAACATG
TAGGCTCGTTGAAAATTTACATCATCCGTTGGTCCACCACTTGCCGCCGC
CGTTAGCCGCCGTATCTCTCGATGTCGTGTACGCTATGCAAGAGTACGCA
CTCCGTAGGGAGGTTTTCCTAAATACCCCCGCATAGAGGTGAGGATCAGC
GATGTTTTCTACTGAGAGCCTTTGAAACATCGTTGTTTGTGGTTATACTT
TTTTAACCGGTCGTCCAGGCAGGAGGGTGTTATGTTCCGTACAATGTTTT
CGACGGGCGCAATTCTACCGGGAACTCTGTGCTGGTACTTCCTTATCAAC
AGCCTGCCCGCAGTGCTGTCGCACCATACCACACCATCGGTGTGATAGCA
GGAACACTGCATCGTGCGACGTGTGCAGAAGTAAAGAGCAACGACCACAC
ACGCACCCTTTTGCAAACTCGAGGCGTATTTACGTATTTACAGCACTAGT
ATCATATAATGTGGCTGAAGCGTGGTTGGGGTCTACCTTGTAGACGGTTC
GCTTTGCTGCTCGCGATTTCTAATCGATCACCACTCGTTCTTTTCGTTGG
CTCTTGTGGATCCCTATGTATCCAGTTCCCCTTTCACACTGCATCTACCT
GTAAATCCACACACAGGGAGTTCCTAGCGACGACGAACCTTCCGTTCTCC
GCTACGTAGAACGGTCGCGGGTTTGCCTCTCTGGTCCGTGTACAGCAGTA
GTCTTCTCACACCACAATCCATCTGCAAACTTTCTGAGAGAATTCGTGGG
CATGATGTGGTGCGAGGTGAACCCTCGCACACCCATCTCCACACCTCTGA
CTCTCCTCTGCTCTGTCCGTCTGTCTCTTCCCGAGACCCTGTCACTCAAC
GGTCGTTGTAGCTAAGTCGACAGAGCACTGCTGTCCTGTCCCCAGAGAGA
CTGGGGATCATAACTTTCCAGCGGCTTCTTCACGTACACATACTTTGCTC
TCAGCAAAACATGAAGCAGAACCTGCTCGGTTTACTGACCCTAAACCTGA
TGGCCGTAGCTTAGTTAAAATGCGAGAGGGACAGCTATCATACCGCCTCT
GGTGTTTCGCGTCGTGAGGGAGCCACAAGAGTTGGCCACGACACCAAACG
AAGGTGCATCATCATTGGCTGTATATACCTTGTATAGAAACCACACGTGG
AGCTTCCTCGAGGAATTTTATTTTGGGAACTTTTGTACTGGTAAAACGTT
TTCGATCGTATCATATGGTGCAACTAGCTGTGGGCGCCACAAGGAACAAA
AGTTCTTGGGCAGTGGAAATTCTAATAAAAACCGTGTCCAGAGAGGTTTT
GGGGACCCCCCCCCCCCCCCTCCCCACGGCGCGTGGCGCGCAACGTTGAT
ACACAAGGGCCGCTAATATCCTTTCTTGGTTTCCCCGAGAGGCTCCGTGA
CTGCAACAGAAATGATTTATTTTCTCAAATCCCGGAAAATCCCGGGATGA
AGGGATATTTGGAAAGAATATTTGATCTGCCAGGCGAGCCCATGTCGGCA
CATCACGTGATTGGCCAAATCACCCCGGCCTCTCCGCAACAGTGTTCTAT
TAGAGAAGATGACGATACACCACTACGTTTCAGTTGACAACACCGATCAC
TGCGCCGTGATTTCTGAAGGCAGCGAGCTCAAAAAGGATTCCCTACAACC
CTGCAATCACTGTGCGAACACCTTCGCCGCTGATTCATGTGGTGGAAGCG
TGTCAGCCGTGCTAAACATAGCATCTGAGGAGCGACTCTTTGAAAATATC
AAGTGTGGGCTGGCTGCGTCCGCAGCAGAGGCGCCATAAAGCTGTCGCGG
GACACAGACATTATTAGAACACCGGCAGTCACAGCAGTCACGCTCTTGCT
CTCTACGCCACGTATCAAGGCGAAAACTTCTTTGCTGTCTCCTCTGTATA
CTGCTCTCCGCCCGCAGGAGGTTGGGTTGGAAGTGGGTTCATTCAACCGG
TGGAGAGAAGTATCGCTTGAGGCTTACGCCTAGCACGCTGAAAATGCAAA
CGACCTCTTTTTACTTTTTTTTGCACTTGAAAATAGAACATATGATACAG
CAGTCAGCTGCTCTGTACTCAGTTAAAGTACAGCATATACTGACAACTGA
CACACATCAATCATGACTTCTTCCACAACTACAGCCTCTCTGCCGAACTT
GCCCCATCCCTGCTGCCCGTGACCCCTGAGTTTGCTTTCACTTCGGTTGA
CCCGGCACCCTTCCCCACTACTTGAACCAAAGACTCGTTGTCTTGGCTAT
CCTACAGCAGCAGCACACCATCAGCCGTGTGTGCGGGCGTGTGTGTCTGG
ATTGATTGTTGCTCTGCACCAGCATTCGAGAGTGTGGGTGTTGTGTCAAA
AGGGAATTCCTTTTGCGCAAACTCATTTTCAAATTTTATTTAAAAGGAAT
TCCTATTCACCGCGCTTATTTTTTTTTTTCAAGAAAGGATATTTGAGATA
ATAAATCCTTTTGCGCAAACTCTCTAATACCTTCGAAGTACGTTTTTGCA
ACGACGCTCCCGACTGACCCAAGCGATCCGCCCACCCTCAAGTTTGCTGT
CCCCGTTCGTTCGTCCCCTCTCCCCGTCGTTCTTCCTCGCCGCCGCCGCT
GCTGACCCAGGCTAATGATGCAGAAGGAGGAAAAGAAGAAGCGCCGGAAG
TGGCAGGAAAATTGGAGGGGGCGGAGCCATCCTCGTGCGACACGGGTTCA
TGGGTTCCGAGTCGAGCGTTGTTCAAGTGGCGGCAAGTGCCGGCGGAGGC
GGTGGGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig21:437529..442887-

>mRNA_P-littoralis_Contig21.114.1 ID=mRNA_P-littoralis_Contig21.114.1|Name=mRNA_P-littoralis_Contig21.114.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig21:437529..442887- (Pylaiella littoralis U1_48)
GACCTCCTCTCACCTTGCTTCAGCTTCGTTGCACAGCCACCTCCGGACAA
GCCACAACCGCTCTCACCGATGAAGACTCTCCTTCTTCGGGACCTACTAC
TTGTCGGGATCTGCGCTTGGAAAGCTGCAGCTCAGGGGCAGGCTAATGAT
GCAGAAGGAGGAAAAGAAGAAGCGCCGGAAGTGGCAGGAAAATTGGAGGG
GGCGGAGCCATCCTCGTGCGACACGGGTTCATGGGTTCCGAGTCGAGCGT
TGTTCAAGTGGCGGCAAGTGCCGGCGGAGGCGGTGGGC
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