mRNA_P-littoralis_Contig209.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig209.62.1
Unique NamemRNA_P-littoralis_Contig209.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig209.62.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI)

HSP 1 Score: 1038 bits (2685), Expect = 0.000e+0
Identity = 570/689 (82.73%), Postives = 606/689 (87.95%), Query Frame = 1 
Query:  127 VVLPIDTYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDQMAA----------------------------------------------AXXXXXXXXXXXXXXXXXXXAGSAPVRRPRMFVSQPRRAATRALVQRVKQEAEISGRGWGVGMRLGHGVREGPPRAEVTFATTGYLARLLARYPGVLNSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLISEYYGLKSAPLFVGARRFPVRQVYVHQLAEKLSYRKVLKTACDSIELATSDSNAKVTSKVHSLQTNLAVQVARAIGSPGSAVLIFVPGMATILEIMNLFELISSADVTYKVIPFHSDLPKEELMPAFGPVGETVVKIVVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAGRTGRVRPGTVYRLYSRIMGEEIMAEHSMSEMLRLPLDALILDLKNMMPDSPVIPILESTVEPPNLQSVHRSLESLHAMGFISSPNDAGVLTDTGRFASGLGVDLELGRMVALGGRLGVLSEALAMAVVLSHPPPFVRASHMVTADPDEANAIVGRSFLAQSVFDRGLYSDTLASVRVLREYLVRAVAGNTPQKSFCRLFSLSYPRMEQLVSTLYVINSRAEDLAGEAIPMVPRDPASDADLANTLRLLLAWTFPRN 2055
            V LPID YREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALD +A                                               A    XXXXXXXXXXXXXXXA +  V+RPRMFVSQPRRAATRALVQRV+QEAE SGRGW VG+RLGHGVREGPP+AEVTFATTGYLARLLA  PGVL+SHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANL+S+YYGL S+PLFVG+RRFPVRQVYV++LA++LSYR+VLK AC+SIELATSD+ A+VT KV SLQTN+AVQVAR + SPGSAVLIFVPGMATILEIMNLFELISSA VTYKVIPFHSDLPKEE+M AFGPVGE VVK+VVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAGRTGRVRPGTVY+LYSR MG EIM+EH MSE+LRLPLDALILDLKNMMP SPVIPIL+STVEPP+LQSVHRSLESLHAMGF +SP+D GVLTDTGRFASGLGVDLELGRMVALGGRLGVLSEA+AMAVVLSHPPPF+RASHMVT DPDEANAIVGRSFLAQSVFDRGLYSDTLAS+RVLREYLVRAV GNTPQKSFCRLFSLSYP+MEQLVSTLY I+SRA +LAGE IPMVPRDPASD DLANTLRLLLAWTFPRN
Sbjct:  789 VPLPIDAYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDLIAEEAAAVAEXXXXXXXXXXXXXXXXXXXXXXXXSGTTGSGGGEEVGVQAGGEGXXXXXXXXXXXXXXXAAAPQVKRPRMFVSQPRRAATRALVQRVRQEAERSGRGWSVGLRLGHGVREGPPKAEVTFATTGYLARLLASNPGVLDSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSSPLFVGSRRFPVRQVYVNELAQRLSYRRVLKKACESIELATSDATARVTPKVLSLQTNMAVQVARGVASPGSAVLIFVPGMATILEIMNLFELISSAHVTYKVIPFHSDLPKEEVMSAFGPVGEGVVKVVVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAGRTGRVRPGTVYKLYSRAMGTEIMSEHGMSEILRLPLDALILDLKNMMPGSPVIPILKSTVEPPDLQSVHRSLESLHAMGFTTSPDDDGVLTDTGRFASGLGVDLELGRMVALGGRLGVLSEAVAMAVVLSHPPPFMRASHMVTGDPDEANAIVGRSFLAQSVFDRGLYSDTLASLRVLREYLVRAVGGNTPQKSFCRLFSLSYPKMEQLVSTLYAIHSRAAELAGEPIPMVPRDPASDPDLANTLRLLLAWTFPRN 1477
[Close]
BLAST of mRNA_P-littoralis_Contig209.62.1 vs. uniprot
Match: A0A7S4MMP8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MMP8_9STRA)

HSP 1 Score: 473 bits (1216), Expect = 5.450e-143
Identity = 299/697 (42.90%), Postives = 416/697 (59.68%), Query Frame = 1 
Query:  130 VLPIDTYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDQMAAAXXXXXXXXXXXXXXXXXXXAGSAPVRRPRMFVSQPRRAATRALVQRVKQ-EAEISGRGWGVGMRLGHGVREGP-PRAEVTFATTGYLARLLARYPGVLNSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLISEYYGLKSAPLFVGARRFPVRQVYVHQLAEKLSY-------RKVLKTACDSIELATSDSNAKVTSKVHSLQTNLAVQVARAIGSPGSAVLIFVPGMATILEIMNLFELISSADVTYKVIPFHSDLPKEELMPAFGPVGETVVKIVVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAGRTGRVRPGTVYRLYSRIMGEEIMAEHSMSEMLRLPLDALILDLKNMMPDSPVIPILESTVEPPNLQSVHRSLESLHAMGFISSPNDAGVLTDTGRFASGLGVDLELGRMVALGGRLGVLSEALAMAVVLSHPPPFVRASHMVTADPDEANAIVGRSFLAQSVFDRGLYSDTLASVRVLREYLVRAVAGNTPQK-SFCRLFSLSYPRMEQLVSTLYVINSR-AEDLAGEAIPM-VPRDPASDADLANT-LRLLLAWTFPRNLIKMKVDTKRHASVLDLKDTGRAVQVGLQGHAIKSKNLKYLI 2181
            VLPID + EEIL  +   RVT+I GETG GKS+R+PVML+     +  +                          R  +MF+SQPRR A ++L +RV+Q E ++      + +R+GHGVRE   P     F TTGYL RLLA +P    SHTHLIIDEVHERSVDTD+LCL  +RL+ THPT+RL++MSAT++A L   Y+G    P+FVGARRFP+++ +V  LA+ L            L  AC+     T+  N+++     ++   LA Q+  ++G  GS+VLIFVPGMA I  I    E ++   V +  +P HSD+P EE M AF P G   VK+++ATN+AESS+TLPDVD+VICLG  K+++++  ++R+ LTP WISRASA QRAGRTGRVR G VYRLYSR    + M      EMLR+PLD++IL L++M+ +  V P+L + +EPPNL ++ RS ESL+   FIS PND G +T  G  A  LGVDL LG +V LG + GV +EA+ MA VL  P      ++ +  D ++ N I  ++F+++  FD  LYS+ LA + VL EY      G    K SFCR  S+S PR+ +L ST   + SR AE L+ +A  + + + P +      T LR+L  W F  ++I+     K    VL   D    ++  L G +I  K+L+ ++
Sbjct:  668 VLPIDEHEEEILRTIAEQRVTIIQGETGCGKSSRVPVMLLRAPPPEPTSN------------------------ARSVKMFISQPRRIAAKSLAERVRQCEPDLRDC---IALRMGHGVREYECPSTRAWFVTTGYLVRLLANHPKSFTSHTHLIIDEVHERSVDTDILCLLCRRLLTTHPTIRLVLMSATMAAALYRSYFGTPEPPIFVGARRFPIKEYFVEDLAQLLHLGPREAMNASSLYEACEKQRCRTAPPNSQM-----NMLYGLATQITLSVGRHGSSVLIFVPGMADIEAITENIEELNVPGVAFTCLPIHSDVPFEEQMQAFDPPGFGEVKVILATNAAESSVTLPDVDHVICLGLAKQIIYNRASHRQMLTPCWISRASATQRAGRTGRVREGNVYRLYSRNTFSQYMDPFETGEMLRIPLDSVILSLRDMLNEE-VTPMLLNCLEPPNLTTIERSFESLYDHKFISEPNDQGEITSLGSLAVSLGVDLTLGALVGLGIQFGVAAEAIQMAAVLGFPKTPWLITNPLYHDSNQYNDISAKTFVSRCHFDAKLYSEPLAIMNVLWEY------GEAKSKESFCRKNSISSPRLRRLASTADNLRSRVAEKLSVDANRLKIDQPPVTMCHAKVTILRILNVWLFSDSIIQFAPSKK----VLPSDDGSYTIK--LSGQSISEKHLEQVL 1319
[Close]
BLAST of mRNA_P-littoralis_Contig209.62.1 vs. uniprot
Match: A0A7S2L2B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L2B3_9STRA)

HSP 1 Score: 451 bits (1160), Expect = 2.110e-141
Identity = 271/647 (41.89%), Postives = 383/647 (59.20%), Query Frame = 1 
Query:  127 VVLPIDTYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDQMAAAXXXXXXXXXXXXXXXXXXXAGSAPVRRPRMFVSQPRRAATRALVQRVKQ-EAEISGRGWGVGMRLGHGVRE-GPPRAEVTFATTGYLARLLARYPGVLNSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLISEYYGLKSAPLFVGARRFPVRQVYVHQLAEKLSYRKVLKTACDSI--ELATSDSNAKVTSKVHSLQTNLAVQVARAIGSPGSAVLIFVPGMATILEIMNLFELISSADVTYKVIPFHSDLPKEELMPAFGPVGETVVKIVVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAGRTGRVRPGTVYRLYSRIMGEEIMAEHSMSEMLRLPLDALILDLKNMMPDSPVIPILESTVEPPNLQSVHRSLESLHAMGFISSPNDAGVLTDTGRFASGLGVDLELGRMVALGGRLGVLSEALAMAVVLSHPPPFVRASHMVTADPDEANAIVGRSFLAQSVFDRGLYSDTLASVRVLREYLVRAVAGNTPQKSFCRLFSLSYPRMEQLVSTLYVINSRAE---DLAGEAIPMVPRDPASDADLANTLRLLLAWTF 2046
            +VLPID +  EIL  ++  RVT+IHGETG GKS+R+P  L+     Q + A                            +M VSQPRR A +AL +RV++ E +++ +   + +R+GHG++E    +    F TTGY+ RLLA +P   +SHTHLIIDEVHERSVD+D+LCL  +RL+ +HPT+RL++MSATL+A+L S+Y+G    P+ VG RRFP+ + +V  L  +LS  +        I  E A S  +A     +     +LA Q+  ++G  GS+VLIFV GM+ I  I  L E ++  DVT+   P HSD+P EE M AF P  E  VK+V+ATN+AESS+TLPDVD+VIC+G CK++V++  ++R+ L P WISRASA QRAGRTGRVR G VYRLYSR    E        E+LR PLD++IL+L++M+ + PV  IL   +E P++ ++ RS +SLHA  FIS PND G +T  G     LG+DL+LG +V LG + G+   ++ +A +LS P      S  +  D    N +V ++F ++  FD GLYS+ +A+  +L +Y     +GN  Q  FCR   LS  RM  L ST+  + SR     D+  E + M              LR++  W F
Sbjct:  316 LVLPIDKHEREILNTIKTQRVTIIHGETGCGKSSRVPCFLLRAEPPQPSLAAPEV------------------------KMIVSQPRRIAAKALAERVRKVEPDLAHK---IALRMGHGMKEFETQKTRAWFVTTGYVVRLLANHPHWFDSHTHLIIDEVHERSVDSDILCLLCRRLLHSHPTIRLVLMSATLAADLYSQYFGAPQ-PIHVGVRRFPINEYFVEDLESQLSLSRKHAQYSQDIHDECAKSRCSAAPPDAIKDKMYHLASQITASVGQHGSSVLIFVAGMSDIQSISELIERLNVRDVTFTCFPIHSDIPFEEQMEAFEPPSEGEVKVVIATNAAESSVTLPDVDHVICMGLCKQIVYNKSSHRQQLIPTWISRASATQRAGRTGRVRNGNVYRLYSRDAYSEYFDPFEAGEILRSPLDSVILNLRDML-NEPVTEILLECLEAPDISTIERSFQSLHASNFISQPNDEGEITSLGNLVVALGIDLKLGALVGLGIQFGIPDASIELAAILSFPKAPWAISSPMYHDSATFNELVSKTFASRCYFDAGLYSEPIATSNLLFDY---CKSGNKEQ--FCRAHCLSRVRMRHLSSTVKNLQSRVAERLDVRSEVLEMNTPFYGMHPTKIALLRIIQVWLF 928
[Close]
BLAST of mRNA_P-littoralis_Contig209.62.1 vs. uniprot
Match: K0RU78_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RU78_THAOC)

HSP 1 Score: 462 bits (1188), Expect = 8.770e-139
Identity = 283/697 (40.60%), Postives = 415/697 (59.54%), Query Frame = 1 
Query:  130 VLPIDTYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDQMAAAXXXXXXXXXXXXXXXXXXXAGSAPVRRPRMFVSQPRRAATRALVQRVKQ-EAEISGRGWGVGMRLGHGVREGPPR-AEVTFATTGYLARLLARYPGVLNSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLISEYYGLKSAPLFVGARRFPVRQVYVHQLAEKL-------SYRKVLKTACDSIELATSDSNAKVTSKVHSLQTNLAVQVARAIGSPGSAVLIFVPGMATILEIMNLFELISSADVTYKVIPFHSDLPKEELMPAFGPVGETVVKIVVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAGRTGRVRPGTVYRLYSRIMGEEIMAEHSMSEMLRLPLDALILDLKNMMPDSPVIPILESTVEPPNLQSVHRSLESLHAMGFISSPNDAGVLTDTGRFASGLGVDLELGRMVALGGRLGVLSEALAMAVVLSHPPPFVRASHMVTADPDEANAIVGRSFLAQSVFDRGLYSDTLASVRVLREYLVRAVAGNTPQKS-FCRLFSLSYPRMEQLVSTLYVINSR-AEDLAGEAIPMVPRDPASDADLANTL--RLLLAWTFPRNLIKMKVDTKRHASVLDLKDTGRAVQVGLQGHAIKSKNLKYLI 2181
            VLPID +  EIL  VR  R+T+IHGETG GKS+R+P ML+  +  +  A                             +M VSQPRR A +AL +RV+  E +++ +   +G+R+GHG+RE   +     F TTGY+ RLLA +PG  ++H+HLIIDEVHERSVDTD+LCL  +RL+ +HPT+RL++MSAT++A L  +Y+G+   P+ VGARRFP+++ +V +LA  L            +   C+  +   + SN  +  K+H    NLA  +  ++G  GS+VLIFVPGM+ I  I +  + ++   V +  +P HSD+P EE M AF P GE  VK+++ATN+AESS+TLPDVD+VICLG CK+++++ Q++R+ L+  WISRASA QRAGRTGRVRPG VYRLYSR   +  M  +   EM+R+PLD +IL L++MM ++ V PIL   +EPP++ ++ RS ESLH   FI+  +D G +T  G     LG+DL LG +V LG + GV +EA+ +A +LS P    + S  +    D+ N IV  +F ++  FD G YS+ LA+  +L ++       N   KS FC   S++  RM+ +  +   I  R AE L   +  +   DP      A  L  RLL  W F   L++  V  K  A    ++  G ++ V L+G  I+ ++L+ ++
Sbjct:  661 VLPIDEHEGEILRAVRTQRITIIHGETGCGKSSRVPCMLLRASPPEPTATAPEV------------------------KMIVSQPRRIAAKALAERVRSCEPDLADK---IGLRMGHGIREYETKDTRAWFVTTGYVVRLLANHPGWFDTHSHLIIDEVHERSVDTDILCLLCRRLLNSHPTIRLVLMSATMAAELYQQYFGVPQPPIHVGARRFPIKEYFVEELASALYLGPRDARLATDIYKDCERSKAQHAPSNPTM-DKLH----NLAASITASVGGHGSSVLIFVPGMSDIEAISDRVDCLNVPGVEFVCLPIHSDVPFEEQMAAFEPPGEGEVKVIIATNAAESSVTLPDVDHVICLGLCKQIMYNNQSHRQMLSSTWISRASATQRAGRTGRVRPGNVYRLYSRNCFKHYMDPYESGEMVRIPLDQVILSLRDMMNEA-VTPILLDCLEPPDVTNIERSFESLHTSNFITDASDQGEITSLGGLVVALGIDLALGALVGLGIQFGVPAEAIELAAILSMPKTPWKISSPMYHSTDQFNEIVTETFASRCFFDFGSYSEPLAAANLLHDF------RNASNKSQFCWKHSVNATRMKHVSGSARSIRCRVAEKLNIRSQVLEADDPPYRLPAAKILILRLLQVWLFHDTLVE-NVIGKNFAKKNKIQRIGESLAVELKGQPIRREHLEQVL 1317
[Close]
BLAST of mRNA_P-littoralis_Contig209.62.1 vs. uniprot
Match: A0A6H5KLV6_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV6_9PHAE)

HSP 1 Score: 438 bits (1127), Expect = 3.650e-136
Identity = 258/350 (73.71%), Postives = 280/350 (80.00%), Query Frame = 1 
Query:  127 VVLPIDTYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDQMA-------------------------------------------AAXXXXXXXXXXXXXXXXXXXAGSAP-VRRPRMFVSQPRRAATRALVQRVKQEAEISGRGWGVGMRLGHGVREGPPRAEVTFATTGYLARLLARYPGVLNSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLISEYYGLKSAPLFVGARRFPVRQVYVHQLAEKLSYRKVLKTACDSIELATSDSNAKVTSKVHSLQTNLAVQVARAIGSPGSAVLIFVPGMATILEIMNLFELISSADVTYK 1044
            V LPID YREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALD +A                                             XXXXXXXXXXX        A +AP V+RPRMFVSQPRRAATRALV+RV+QEAE SGRGW VG+RLGHGVREGPP+AEVTFATTGYLARLLA  PGVL+SHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANL+S+YYGL S PLFVG+RRFPVRQVYV++LA++LSYR+VLK AC+SIELATSD+ A+VT KV SLQTN+AVQVARA+ SPGSAVLIFVPGMATILEIMNLFELISSA V+YK
Sbjct:  639 VPLPIDAYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDLIAEEAAAVAEAVREGAXXXXXXXXXXXXXXXXXXKNXXXXXXEAGVXXXXXXXXXXXXAESPAGGIAAAAPQVKRPRMFVSQPRRAATRALVERVRQEAERSGRGWSVGLRLGHGVREGPPKAEVTFATTGYLARLLASNPGVLDSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLLSKYYGLTSPPLFVGSRRFPVRQVYVNELAQRLSYRRVLKKACESIELATSDATARVTPKVLSLQTNMAVQVARAVASPGSAVLIFVPGMATILEIMNLFELISSAHVSYK 988
[Close]
BLAST of mRNA_P-littoralis_Contig209.62.1 vs. uniprot
Match: A0A1E7ENH0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ENH0_9STRA)

HSP 1 Score: 439 bits (1130), Expect = 1.800e-131
Identity = 264/657 (40.18%), Postives = 389/657 (59.21%), Query Frame = 1 
Query:  133 LPIDTYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDQMAAAXXXXXXXXXXXXXXXXXXXAGSAPVRRPRMFVSQPRRAATRALVQRVKQ-EAEISGRGWGVGMRLGHGVREGPPR-AEVTFATTGYLARLLARYPGVLNSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLISEYYGLKSAPLFVGARRFPVRQVYVHQLAE------KLSYRKVLKTACDSIELATSDSNAKVTSKVHSLQTNLAVQVARAIGSPGSAVLIFVPGMATILEIMNLFELISSADVTYKVIPFHSDLPKEELMPAFGPVGETVVKIVVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAGRTGRVRPGTVYRLYSRIMGEEIMAEHSMSEMLRLPLDALILDLKNMMPDSPVIPILESTVEPPNLQSVHRSLESLHAMGFISSPNDAGVLTDTGRFASGLGVDLELGRMVALGGRLGVLSEALAMAVVLSHPPPFVRASHMVTADPDEANAIVGRSFLAQSVFDRGLYSDTLASVRVLREYLVRAVAGNTPQKSFCRLFSLSYPRMEQLVSTLYVINSRAEDLAGE-----AIPMVPRDPASDADLANTLRLLLAWTFPRNLIK 2064
            LPID +  EIL+ +RNNRVT+IHGETG GKS+R+PVML++                             GS  +R+ + F+SQPRR A +ALV+RV+  E ++  +     +R+G G +E   +  + +F TTGYL RLLA +P   N  THL+IDEVHERSVDTDLLCL ++RL++T+ T+RL++MSATL+  +  +Y+ + + P+ VG R FP+ + ++  L++      +      ++   +S +  T+  +A+++++       L  ++A  +G PGS+VLIFVP M  I+ I    E      + Y   P H D+P EE M AF    E  VK+++ATN+AESS+TLP VD+VICLG CK+++++  ++R+ LTP WISRASA QRAGRTGRVRPG VYRLY+R   E  M E    EMLR+PLD++IL LK ++ +  VIP     +EPP L ++ RS +SLH  GFI+  +D   +T  G F S LGVDL LG  + LG + GV +EA+ MA ++S      + +  +   PDE N    +++ A+  FD GLYS+ LA +  L +Y++   A N  + ++C    ++  R +Q VS+   I  R  D  G       + + PRD      L   LRLL+ W F  ++I+
Sbjct:  299 LPIDDHETEILDDIRNNRVTIIHGETGCGKSSRVPVMLLKSPPPD------------------------GS--LRKVKFFISQPRRIAAKALVERVRSCEPDLKDK---FSLRMGGGWKEYESKETQASFVTTGYLVRLLANHPEKFNEMTHLVIDEVHERSVDTDLLCLLSRRLLQTNKTIRLVLMSATLATKMYRDYFSVINEPIHVGVRTFPITEYFIEDLSQFGLPSQEAKAASAIRKEIESKKCVTAPKSAEISNRFA-----LTARLATIVGEPGSSVLIFVPRMGEIVSITECIESFHMTGIRYTCFPIHGDIPFEEQMNAFNDPEEDEVKVIIATNAAESSVTLPAVDHVICLGLCKQIIYNQASHRQMLTPAWISRASATQRAGRTGRVRPGNVYRLYTRRAYENYMEEFEPGEMLRIPLDSVILLLKQILHEE-VIPAFMDCLEPPPLDTISRSFQSLHHWGFITEADDKADITSLGSFVSSLGVDLSLGAFIGLGIQFGVAAEAIEMAAMMSLTKTPFQITSPMWLTPDEFNVNASQTYAAKCKFDAGLYSEPLALMNALWDYVI---ASN--KNTWCYKNKIAATRWKQAVSSRNSIRKRVADFLGVNEDKLQVQLPPRDMPRQKLLF--LRLLMVWVFSDSIIE 913
[Close]
BLAST of mRNA_P-littoralis_Contig209.62.1 vs. uniprot
Match: A0A448ZQI2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQI2_9STRA)

HSP 1 Score: 430 bits (1105), Expect = 4.030e-127
Identity = 267/658 (40.58%), Postives = 387/658 (58.81%), Query Frame = 1 
Query:  133 LPIDTYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDQMAAAXXXXXXXXXXXXXXXXXXXAGSAPVRRPRMFVSQPRRAATRALVQRVKQ-EAEISGRGWGVGMRLGHGVREGPPR-AEVTFATTGYLARLLARYPGVLNSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLISEYYGLKSAPLFVGARRFPVRQVYVHQLAEKLSYRKVLKTACDSIELATSDSNAK---VTSKVHSLQTN---LAVQVARAIGSPGSAVLIFVPGMATILEIMNLFELISSADVTYKVIPFHSDLPKEELMPAFGPVGETVVKIVVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAGRTGRVRPGTVYRLYSRIMGEEIMAEHSMSEMLRLPLDALILDLKNMMPDSPVIPILESTVEPPNLQSVHRSLESLHAMGFISSPNDAGVLTDTGRFASGLGVDLELGRMVALGGRLGVLSEALAMAVVLSHPP-PFVRASHMVTADPDEANAIVGRSFLAQSVFDRGLYSDTLASVRVLREYLVRAVAGNTPQKSFCRLFSLSYPRMEQLVSTLYVINSRAEDLAGEA-----IPMVPRDPASDADLANTLRLLLAWTFPRNLIK 2064
            LPID +   ILE++RN+RVT+IHGETG GKS+R+PVML++                             GS  +++ + F+SQPRR A +ALV+RV+  E E   +     +R+GHG +E   +  +  F TTGYL RLLA  P      THL+IDEVHERSVDTD+LCL  +RL+ET+  +RL++MSATL+  +  EY+ + + P+ VG RR+P+ + +V  LA+     +  K A     LA    N K   +T+   +   N   LA ++A  +G PGS+VLIFVPGMA I+ I    E   +  V Y   P H D+P E+ M AF    +  VKI++ATN+AESS+TLP+VD+VICLG C++++++  ++R+ LTP WIS+ASA QRAGRTGRVRPG VYRLY+R        E    EM+R+PLD++IL LK ++ +  V+P+    +EPP L ++ RS +SL+   FI+ P+D   +T  G F S LGVDL LG  + LG + GV +EA+ MA ++S P  P+   S M  A P + N    ++F A+  FD GLYS+ +  +  L +Y    V G++ + S+C    L+  R +Q +S+   +  R  D  G +     I + PRD      L   LR+L  W F  ++++
Sbjct:  548 LPIDEHESAILENIRNHRVTIIHGETGCGKSSRVPVMLLKAPPPD------------------------GS--LQKVKFFISQPRRIAAKALVERVRSCEPEFKNK---FALRMGHGWKEYESKETQAYFVTTGYLVRLLANNPERFEDCTHLVIDEVHERSVDTDILCLLCRRLLETNENIRLVLMSATLATKMYREYFDVPNEPIHVGVRRYPITEYFVEDLAQFGLPNQEAKAA-----LAIQQENEKKRCITAPTSAEMKNRFGLAARLATLVGIPGSSVLIFVPGMAEIIAISECIEGFHTPGVRYTCFPIHGDIPFEDQMEAFHAPAKDEVKIIIATNAAESSVTLPNVDHVICLGLCRQIIYNQASHRQMLTPAWISQASAKQRAGRTGRVRPGNVYRLYTRRAHNNYFDEFEPGEMVRIPLDSVILMLKQILHEE-VVPVFMDCLEPPPLDTIDRSFQSLYHWNFITEPDDEADITSLGSFVSALGVDLSLGSFIGLGIQFGVAAEAIEMAAMMSLPKTPYQITSPMWLA-PGKFNQNASQTFSAKCKFDCGLYSEPMGLMNALWDY--EGVVGSSKKNSWCHNNHLALKRWQQALSSRNSLRKRVADFLGISEERLRIQLPPRDMPEGKILI--LRVLKVWVFSDSIVE 1165
[Close]
BLAST of mRNA_P-littoralis_Contig209.62.1 vs. uniprot
Match: B5Y583_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y583_PHATC)

HSP 1 Score: 424 bits (1091), Expect = 2.960e-125
Identity = 261/664 (39.31%), Postives = 399/664 (60.09%), Query Frame = 1 
Query:  127 VVLPIDTYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDQMAAAXXXXXXXXXXXXXXXXXXXAGSAPVRRPRMFVSQPRRAATRALVQRVKQ-EAEISGRGWGVGMRLGHGVRE-GPPRAEVTFATTGYLARLLARYPGVLNSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLISEYYGLKSAPLFVGARRFPVRQVYVHQLAEKLSYRKV-------LKTACDSIELATSDSNAKVTSKVHSLQTNLAVQVARAIGSPGSAVLIFVPGMATILEIMNLFELISSADVTYKVIPFHSDLPKEELMPAFGPVGETVVKIVVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAGRTGRVRPGTVYRLYSRIMGEEIMAEHSMSEMLRLPLDALILDLKNMMPDSPVIPILESTVEPPNLQSVHRSLESLHAMGFISSPNDAGVLTDTGRFASGLGVDLELGRMVALGGRLGVLSEALAMAVVLSHPP-PFVRASHMVTADPDEANAIVGRSFLAQSVFDRGLYSDTLASVRVLREYLVRAVAGNTPQKSFCRLFSLSYPRMEQLVSTLYVINSRAEDLAGEAIPMVPRD------PASDADLANTLRLLLAWTFPRNLIKMK 2070
            +VLP+D + E IL  VR NRVT+I GETG GKS+RIP+ML++                                 + + +M++SQPRR A +ALV+RV+  E E+      + +R+GHGV E    +    F TTGYL R+LA +P   +  ++L+IDEVHERSVDTD+LCL  +RL++ +  +RL++MSATL+A+L  EY+     P+ VGARRFPV++V++  L E++++ +        L + C+ ++ A   S + +  K+ SL +++A+ V    G PGS+VLIFVPGM  I+ I  L E +    V +   P HSD+P E+ M  F    E  VKI++ATN+AESS+TLPDVD+VICLG CK++V++  ++R+ L P WIS+ASA QRAGRTGR+RPGTVYR+Y+R +    M +    EM+R+PLD++IL LK M+ D  V  +L   +EPPN+ ++ RS +SL+   FI+S      +T  G F   +GVDL LG +V LG + GV +EA+ MA VLS P  P++ ++ ++    D  N +  ++++++  FD  L+S+ L+++ ++ E+     A N  Q ++C  F +SYPR+++L +T      R  D    +   +  D      P S   L   LR++  W F  ++I+ +
Sbjct:  514 LVLPVDEHEEIILASVRTNRVTIIQGETGCGKSSRIPIMLLKAPCPIPT--------------------------MNQSKMYISQPRRIAAKALVERVRSVEPELKN---AIALRMGHGVCEYESKKTRAWFVTTGYLVRVLANHPEKFDRISYLVIDEVHERSVDTDILCLLCRRLLKVNQNIRLVLMSATLAASLYQEYFNTTEPPIKVGARRFPVKEVFLEDLQEQVAFSQKEEKTVNQLASECNKMKCAKPPSLSYM-EKIFSLVSHIAMFV----GRPGSSVLIFVPGMNEIVAITELVEQLFKPGVRFTCFPIHSDIPFEDQMIVFDATAEDEVKIIIATNAAESSVTLPDVDHVICLGLCKQIVYNEASHRQILMPTWISKASATQRAGRTGRLRPGTVYRMYTREVYRHYMDDFEPGEMVRIPLDSVILMLKEMLSDEDVTKVLLDCLEPPNIATIDRSFQSLYKCRFITSAEGDCEITSLGSFVLAMGVDLLLGSLVGLGIQFGVGAEAVQMAAVLSFPKTPWIMSNPLIHESKDY-NEMTTKTYVSRCHFDANLFSEPLSAMNLIWEF---EQAKN--QANWCWKFGISYPRIKRLAATSSNFRRRVADFLSISTNDLELDAPPLFMPHSKVTL---LRVIQVWVFNDSIIECR 1134
[Close]
BLAST of mRNA_P-littoralis_Contig209.62.1 vs. uniprot
Match: A0A1Z5JF36_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JF36_FISSO)

HSP 1 Score: 421 bits (1082), Expect = 5.190e-125
Identity = 266/700 (38.00%), Postives = 408/700 (58.29%), Query Frame = 1 
Query:  133 LPIDTYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDQMAAAXXXXXXXXXXXXXXXXXXXAGSAPVRRPRMFVSQPRRAATRALVQRVKQ-EAEISGRGWGVGMRLGHGVREGPPR-AEVTFATTGYLARLLARYPGVLNSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLISEYYGLKSAPLFVGARRFPVRQVYVHQLAEKLSYR---------KVLKTACDSIELATSDSNAKVTSKVHSLQTNLAVQVARAIGSPGSAVLIFVPGMATILEIMNLFELISSADVTYKVIPFHSDLPKEELMPAFGPVGETVVKIVVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAGRTGRVRPGTVYRLYSRIMGEEIMAEHSMSEMLRLPLDALILDLKNMMP-DSPVIPILESTVEPPNLQSVHRSLESLHAMGFISSPNDAGVLTDTGRFASGLGVDLELGRMVALGGRLGVLSEALAMAVVLSHPP-PFVRASHMVTADPDEANAIVGRSFLAQSVFDRGLYSDTLASVRVLREYLVRAVAGNTPQK-SFCRLFSLSYPRMEQLVSTLYVINSRAED---LAGEAIPMVPRDPASDADLANTLRLLLAWTFPRNLIKMKVDTKRHASVLDLKDTGRAVQVGLQGHAIKSKNLKYLI 2181
            LPID + + I++ VR +RV++I GETG GKS+R+P+ML++      A +                             MFVSQPRR A +ALV+RV+  E E+  +   + +R+GHGVRE   +  +  F TTGYL R+LA   G  N+ +HLI+DEVHERSVDTDLLC   +RL+  +P +RL++MSATL+A+L   Y+ ++   + VGA+RFP+++ Y+    +   ++           L   C + +   + S   V  KV S  T LA  +    G PGS+VLIFVPGM  I+ I  L E +   DV +   P HSD+P E+ M  F P     +KI++ATN+AESS+TLPD D+VICLG CK++V++  ++R+ L P WISRASA QRAGRT RVRPGTVYR+Y+R + E  M E    EM R+PLD++IL LK ++  +  V  IL   +EPP++ ++ RS +SLH   F++ P+D G +T+ G F + LG+DL LG ++ LG + G   EA+ +A VLS P  P++ ++ ++  +P + N  V ++++++  FD  L+S+ LA + ++ EY       + P+K SFCR +SL  PR+ ++V+    +  R  D   L   A+ +              LR+L AW F  ++I+     + H+      +   A+++  +   I++K+L+ L+
Sbjct:  512 LPIDEHEQVIIDTVRKHRVSIIQGETGCGKSSRLPIMLLKAPPPDPALSEVE--------------------------MFVSQPRRIAAKALVERVRSIEPELGPK---IALRMGHGVREYESKQTKAWFVTTGYLVRVLANDLGRFNTVSHLIVDEVHERSVDTDLLCWLCRRLLAYNPHIRLVLMSATLAASLYQVYFDVRHPLIHVGAKRFPLKEYYLEDFLDPKQFKLPPREKKTVDALIANCKTTKCRAAPSY-NVMEKVFSFVTYLATSL----GQPGSSVLIFVPGMNEIVSITELVEQVYVPDVVFTCFPIHSDIPFEDQMEVFAPPKPGEIKIMIATNAAESSVTLPDCDHVICLGLCKQIVYNQLSHRQMLLPTWISRASATQRAGRTSRVRPGTVYRMYTRDIFERHMDEFEPGEMRRIPLDSVILMLKQIVESEESVSKILSECLEPPDMSTIERSYDSLHKSHFLTQPDDEGTITNLGNFVAALGIDLTLGSLIGLGIQFGCGPEAVQLAGVLSFPQAPWIMSNSLIH-EPSDFNDQVAKAYVSRCHFDANLFSEPLAVMNLMWEY------SHAPRKGSFCRQYSLYEPRLRRMVNVCENLQRRVADFIQLPATALDLEAPPVFMPHAKICLLRILQAWVFHDSVIQSS--PREHSG--GASEDAYAIELLKKSDPIENKHLQKLL 1166
[Close]
BLAST of mRNA_P-littoralis_Contig209.62.1 vs. uniprot
Match: A0A8J2SN25_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SN25_9STRA)

HSP 1 Score: 414 bits (1063), Expect = 3.240e-121
Identity = 268/697 (38.45%), Postives = 390/697 (55.95%), Query Frame = 1 
Query:  133 LPIDTYREEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDQMAAAXXXXXXXXXXXXXXXXXXXAGSAPVRRPRMFVSQPRRAATRALVQRVKQEAEISGRGWGVGMRLGHGVREGPPRAEVTFATTGYLARLLARYPGVLNSHTHLIIDEVHERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLISEYYGL--KSAPLFVGARRFPVRQVYVHQLAEKLSYRKVLKTACDSIELATSDSNAKVTSKVHSLQTNLAVQVARAIGSPGSAVLIFVPGMATILEIMNLFELISSADVTYKVIPFHSDLPKEELMPAFGPVGETVVKIVVATNSAESSITLPDVDNVICLGSCKEMVFDPQTNRKTLTPVWISRASAVQRAGRTGRVRPGTVYRLYSRIMGEEIMAEHSMSEMLRLPLDALILDLKNMMPDSPVIPILESTVEPPNLQSVHRSLESLHAMGFISSPN-DAGVLTDTGRFASGLGVDLELGRMVALGGRLGVLSEALAMAVVLSHP-PPFVRASHMVTADPDEANAIVGRSFLAQSVFDRGLYSDTLASVRVLREYLVRAVAGNTPQKSFCRLFSLSYPRMEQLVSTLYVINSRAEDLAGEAIP---------MVPRDPASDADLANTLRLLLAWTFPRNLIKMKVDTKRHASVLDLKDTGRAVQVGLQGHAIKSKNLKYLIP 2184
            LPID +R EIL+ +  NRVT++ GETG GKS+R+P+ML+E   D  A                              +MFVSQPRR A RAL  RV+Q       G  VG+RLG G R+   +  + F +TGYL RL+A +P  L +HTH+I+DEVHERSVDT++LCL  +RLV+ HPT+R+++MSAT+  +L + Y+G+  +++ L VGARR+PV + Y   + + L   + L +    + L T +          S Q  L   + R++G+PGS++L+FVPG+A IL++ +  E +     T    P HS++P +E +  F       V++++ATN+AES +T+PD D+VI LG+ KE+ ++  T+R  L  VWIS++SAVQRAGRTGRVRPG+VYRLY R     + A  + SE+ R PLD ++LDL  +  D     +L  TVEPP++ SV RS   LH+   I+S N D   +T+ G F + LGVDL LGR+V L  + G+L +  A+A  LS P  P+  AS ++  DP E N I  RSF+++  +D G+ S+ +A +R+ R Y     A +  +K FC   ++   RM QL S    +  RA +                +   DP  D    N LRLLL WT   N +    D K    +          +VGL G ++   ++  L P
Sbjct:  447 LPIDAHRLEILDTIARNRVTIVCGETGCGKSSRLPLMLLEN--DSKA------------------------------KMFVSQPRRIAARALCDRVRQSL-----GEEVGLRLGFGERDESRKTRLWFCSTGYLVRLVAAHPQALKTHTHIIVDEVHERSVDTEILCLLLRRLVQEHPTIRVVLMSATVCVDLYASYFGVDPRTSSLHVGARRYPVTEFYADDVVDSLRLPENLHSNAQRLVLHTGERPPHA-----SAQHPLVKAIVRSVGTPGSSILVFVPGLADILDLTDKIEQLPGFICT----PIHSEVPFDEQLSVFQKTES--VRVILATNAAESGVTIPDCDHVIDLGTAKELTYNAATHRSMLDQVWISQSSAVQRAGRTGRVRPGSVYRLYGRDRYLRMNA-FTTSEIHRQPLDKVVLDLMTLETDLTAASMLSETVEPPSIDSVLRSYHELHSSALITSSNCDEADVTNMGAFVAQLGVDLHLGRLVGLSAQSGMLIDGCALAATLSQPRSPWRIASPLIHQDPQEYNEIASRSFVSRYRWDSGMQSEPIALLRLSRAYAKLVTASS--KKEFCSKHNVVEARMRQLCSASSNLYRRALEAMDRDTRSKHDQTTSLLQSEDPLQDEARLNRLRLLLTWTTAPNGLFQLYDVKHKTHIH---------RVGLTGPSLLKDHIATLFP 1083
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig209.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSM0_ECTSI0.000e+082.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S4MMP8_9STRA5.450e-14342.90Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2L2B3_9STRA2.110e-14141.89Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
K0RU78_THAOC8.770e-13940.60Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A6H5KLV6_9PHAE3.650e-13673.71Helicase ATP-binding domain-containing protein n=1... [more]
A0A1E7ENH0_9STRA1.800e-13140.18Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448ZQI2_9STRA4.030e-12740.58Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B5Y583_PHATC2.960e-12539.31Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5JF36_FISSO5.190e-12538.00Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A8J2SN25_9STRA3.240e-12138.45Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig209contigP-littoralis_Contig209:345184..362175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSM0
Preferred nameYTHDC2
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind,YTH
Model size2482
Max annot lvl2759|Eukaryota
KEGG koko:K14442,ko:K20099
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
Exons13
Evalue0.0
EggNOG OGsCOG1643@1|root,KOG0921@2759|Eukaryota
EC3.6.4.13
Descriptionpositive regulation of polysome binding
Cds size2478
COG categoryL
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig209.62.1prot_P-littoralis_Contig209.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig209 345186..362175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790015.7988157-CDS-P-littoralis_Contig209:345185..3454751680790015.7988157-CDS-P-littoralis_Contig209:345185..345475Pylaiella littoralis U1_48CDSP-littoralis_Contig209 345186..345475 -
1680790015.8094876-CDS-P-littoralis_Contig209:345858..3459911680790015.8094876-CDS-P-littoralis_Contig209:345858..345991Pylaiella littoralis U1_48CDSP-littoralis_Contig209 345859..345991 -
1680790015.820149-CDS-P-littoralis_Contig209:346963..3470781680790015.820149-CDS-P-littoralis_Contig209:346963..347078Pylaiella littoralis U1_48CDSP-littoralis_Contig209 346964..347078 -
1680790015.8293164-CDS-P-littoralis_Contig209:349985..3501671680790015.8293164-CDS-P-littoralis_Contig209:349985..350167Pylaiella littoralis U1_48CDSP-littoralis_Contig209 349986..350167 -
1680790015.8404267-CDS-P-littoralis_Contig209:351076..3512201680790015.8404267-CDS-P-littoralis_Contig209:351076..351220Pylaiella littoralis U1_48CDSP-littoralis_Contig209 351077..351220 -
1680790015.8530233-CDS-P-littoralis_Contig209:352544..3527001680790015.8530233-CDS-P-littoralis_Contig209:352544..352700Pylaiella littoralis U1_48CDSP-littoralis_Contig209 352545..352700 -
1680790015.8640542-CDS-P-littoralis_Contig209:353074..3532431680790015.8640542-CDS-P-littoralis_Contig209:353074..353243Pylaiella littoralis U1_48CDSP-littoralis_Contig209 353075..353243 -
1680790015.872515-CDS-P-littoralis_Contig209:356834..3569171680790015.872515-CDS-P-littoralis_Contig209:356834..356917Pylaiella littoralis U1_48CDSP-littoralis_Contig209 356835..356917 -
1680790015.881523-CDS-P-littoralis_Contig209:357466..3576281680790015.881523-CDS-P-littoralis_Contig209:357466..357628Pylaiella littoralis U1_48CDSP-littoralis_Contig209 357467..357628 -
1680790015.8941514-CDS-P-littoralis_Contig209:358970..3591151680790015.8941514-CDS-P-littoralis_Contig209:358970..359115Pylaiella littoralis U1_48CDSP-littoralis_Contig209 358971..359115 -
1680790015.9043994-CDS-P-littoralis_Contig209:360488..3606111680790015.9043994-CDS-P-littoralis_Contig209:360488..360611Pylaiella littoralis U1_48CDSP-littoralis_Contig209 360489..360611 -
1680790015.9176068-CDS-P-littoralis_Contig209:361017..3611961680790015.9176068-CDS-P-littoralis_Contig209:361017..361196Pylaiella littoralis U1_48CDSP-littoralis_Contig209 361018..361196 -
1680790015.927578-CDS-P-littoralis_Contig209:361578..3621751680790015.927578-CDS-P-littoralis_Contig209:361578..362175Pylaiella littoralis U1_48CDSP-littoralis_Contig209 361579..362175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig209.62.1

>prot_P-littoralis_Contig209.62.1 ID=prot_P-littoralis_Contig209.62.1|Name=mRNA_P-littoralis_Contig209.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=826bp
ASVNRGDQSRDSSDSERNRGSREDVGSQAAETQAPPPPPPPPVVLPIDTY
REEILEHVRNNRVTVIHGETGSGKSTRIPVMLVEEALDQMAAAAAAAEAG
GAGPDAGAGAGAAGSAPVRRPRMFVSQPRRAATRALVQRVKQEAEISGRG
WGVGMRLGHGVREGPPRAEVTFATTGYLARLLARYPGVLNSHTHLIIDEV
HERSVDTDLLCLFAKRLVETHPTLRLIVMSATLSANLISEYYGLKSAPLF
VGARRFPVRQVYVHQLAEKLSYRKVLKTACDSIELATSDSNAKVTSKVHS
LQTNLAVQVARAIGSPGSAVLIFVPGMATILEIMNLFELISSADVTYKVI
PFHSDLPKEELMPAFGPVGETVVKIVVATNSAESSITLPDVDNVICLGSC
KEMVFDPQTNRKTLTPVWISRASAVQRAGRTGRVRPGTVYRLYSRIMGEE
IMAEHSMSEMLRLPLDALILDLKNMMPDSPVIPILESTVEPPNLQSVHRS
LESLHAMGFISSPNDAGVLTDTGRFASGLGVDLELGRMVALGGRLGVLSE
ALAMAVVLSHPPPFVRASHMVTADPDEANAIVGRSFLAQSVFDRGLYSDT
LASVRVLREYLVRAVAGNTPQKSFCRLFSLSYPRMEQLVSTLYVINSRAE
DLAGEAIPMVPRDPASDADLANTLRLLLAWTFPRNLIKMKVDTKRHASVL
DLKDTGRAVQVGLQGHAIKSKNLKYLIPAVYPGMKKIDVRPLQPFYKSVY
QTPSRMSVGPFVAAWRLWNVLNELRGQPSASPPSTSSSSAATTTTTTSTT
SSPPVADDQSGGGGGGGGGGANEVQA
back to top

mRNA from alignment at P-littoralis_Contig209:345184..362175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig209.62.1 ID=mRNA_P-littoralis_Contig209.62.1|Name=mRNA_P-littoralis_Contig209.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=16992bp|location=Sequence derived from alignment at P-littoralis_Contig209:345184..362175- (Pylaiella littoralis U1_48)
GCAAGTGTGAACAGGGGGGACCAGAGCAGAGACAGCAGCGACAGCGAGAG
AAATCGCGGGAGCAGAGAGGACGTTGGGAGTCAAGCAGCCGAGACGCAGG
CTCCGCCGCCGCCGCCGCCACCGCCAGTGGTCTTGCCGATTGACACCTAC
CGGGAGGAAATCCTGGAGCACGTGAGAAACAACCGCGTAACGGTCATCCA
CGGCGAGACCGGCAGCGGAAAGAGCACACGGATCCCGGTCATGCTCGTCG
AAGAAGCTTTGGACCAGATGGCTGCAGCAGCAGCAGCAGCGGAGGCGGGG
GGGGCGGGGCCGGATGCGGGTGCAGGTGCGGGTGCGGCGGGATCGGCACC
GGTTCGGCGGCCGAGGATGTTCGTGTCTCAGCCCAGGCGGGCGGCGACGC
GCGCCCTGGTACAAAGGGTGAAGCAGGAGGCCGAAATCTCTGGGAGAGGG
TGGGGCGTCGGGATGAGGCTCGGGCACGGGGTGCGGGAGGGGCCGCCGAG
GGCTGAGGTGACGTTCGCCACGACGGGGTACCTGGCGAGGCTTCTCGCGA
GATACCCGGGGGTGTTGAACTCTCACACGCATCTCATCATCGACGAGGTG
TGCTCCAAGAGCAGCGAAACCCGTAGTGCGCATTTTTTCATCACCATCTC
ACAACAACCCTTTCTCAATCAACATTGCGTACATGTCGTAAAAACTTTGA
CATTACTTCATACCTGTTGTTAGTATTTTTTTTTTTGGTGATTGTGTGTT
GAAATGCCAAATCCACCCAAAAAAGATGTCGACCGCAAAATCAAAAGCTA
TCATAAAGAAAGAATAAAAAAGAAATCAAACGCGTATCATTAGTGTACCC
TACATTATAAATACTCAGTAAGTTGTGTGTTGAACATGCCCTACACGGTC
ATGAACGAGTGAAGGCATTGATTCAATTCACTCCTGCCTCTAGTTTTTTT
GACGCATCACTCAACAATCAACCAATTAGGTGCACGAGCGGTCCGTGGAT
ACCGACCTGCTGTGCCTGTTCGCCAAGAGGCTGGTCGAGACGCACCCGAC
CCTTCGCCTTATCGTCATGAGCGCCACCCTTTCAGCCAACCTCATCAGCG
AGTACTACGGGCTGAAGTCTGCCCCGCTCTTTGTCGGGGCAAGACGGTTC
CCGGTCAGGTCCGAACAGAATGCCACCTTGCGTAGATTCTGCTGTAGCCC
CAATCTAGGAAGTAGTTTCGTTGCTGTCGCGTTTCGCGTACGGTGTCAAA
CAGGGGTGGGGATGTCGACGGTGTGTTTGTGGGCTTGGTGGGGTGAGACG
GGCGTAGGTGTAGGCAGATGAGGATGTTGGGATCGAGGTGGGGATGTGCT
TGTGCTTGTTCTTGTTCTTGTTCTTGTTCTTGTTCTTGCTCGTGTGCTTG
TGCTTGTGCTTGTGCTTGCGCTTGTGCTTGTCATGCGTACGCTTGTGCAT
GCGCGTGCGCGTGTGGGTGTGGGTGTGGGTGTGGGTGCCTGAAGTCGAGA
ACTCCGCCTTTGTCCCCTTCGTCCTGAACTCCCGCGCGCCGGCAACAACG
ATGGGTTCGCGCAGGCAAGTGTACGTGCACCAGCTCGCCGAGAAGCTTTC
GTACCGCAAGGTGCTGAAGACGGCCTGCGACAGCATTGAGCTCGCCACCA
GCGACTCGAACGCCAAGGTTACGTCTAAGGTACACAGGCACACCTCCTTT
GACTGTTTTGACAAATATTTCGTATCATGCATGTGCGGCGGGCAAGGTTA
CCCCGTAGGGAGGTCGGGTACGAGCCCTCGCGGGGGTGGAGGGCATGCGT
ATCTTGCTATCATATGCATTTTTGATGGGTCGTTCACCCAATCCTCTATT
ACCGCGTGCTCGTGAGGTCAGTGCGCGTCTGCATGTGTGTGTGGCTGGAG
GTGTCGGGACGGCCGTCCTCCGTTTCTTGGGCATTCCCAGGGCAACGTAT
GCTGAATCGCAAACATGTCATGTAAGGCAGCTGGTGCTGCTGGTGCTGAT
ACAGCCACTGCTACTCTCGTCGGGTATCCTTCAATATTCTTCAGCAGCAG
GACGGTGCTGCGAGCTGGACACTTCACTGAACAGCAGCAGACGAAACACA
TCCAAACGCCCGGAAGCGCTCATAGTGCAGTATTTTGTGAAAGCGGTCGT
AACACAAAACATGTTTTTTAGTGCCGTGCAGGAGGTTGCTCGTTCTTGGC
CCCTGTCATGTTTCGCATGCGTATTTGGATATGTGGCGCGCGCTCGTATG
CGTGTGTGCACCCATGTGTGCGTGTGTACGCGTGTGTCAACATCACTGCT
CGCCCTGCCTGGCGTTTCTCGCGGCAGCAGATGTGTTGTGGTTTTTGCGC
AAACACATCACATCAAAGCACCAACCTCCTGCTAGTAGTTGCTGCTGTTC
CCTTGTCGATCGAGGTCTAGATTGATTGTGTGACTGCGCGCCAGTTTTCC
ACGGCCCCTGGGGATGCGGCTTTTTGTTCGACGGAGAGCAACCCCGCGAA
ATTGAGCCAGCAGTGCCGGCGGCCACTTCAGGCCGCGAGTACGCGGGCCA
CGGGCGCCCGTCGAGACCCAGGCATGGGGGGGGGTACCTTCTGCCGTACG
GGCCCTCCTGCGTGCGGCGGCGCGGAAAGAGTGGCGATAAAACAGCGCAG
TGCCGACGGAGGAAAGCCCTGCCAAGCACCAAAAACACTATTTAAAATCA
TGCACAACACATACCTACAGCACCAGTTTCGCTAGTTTTGCGAATGCATA
AGTTTTTTTTGTGTGTGTGTGTTTTTTTTTTCTGTTTTTTGCTCTATTGC
TGTTATTGCTCTGTTCTGTTTTCTTCTGTTATGTTTTGTTACGTTGTTCT
GTTGTGTTATGTTATGTTCTGTTCTGTTCTGTTCTGTTCTGTACTGCTGC
TGTTCAGTTCTACTTCGTACTCTGTTCTGTTGTGTACTACTGCTGTTCTG
CTCTGTTCTGTTCTGGCCTCCTCCGACCTGATTATTTCAAATTTCTCTTT
TTTTTTTTGTGGTCGTGGTTGTTTTCGTCGGGATGTTTGGGGGGGGGGGG
GGGTTTTGAGCTTGCAGACCAACCTGGCCGTGCAGGTGGCCAGAGCGATC
GGCTCCCCGGGCTCCGCCGTGCTCATCTTCGTCCCGGGCATGGCGACCAT
CCTGGAGATCATGAATCTCTTCGAGCTAATCTCGTCCGCGGATGTCACCT
ACAAGGTTCGTTGCGCGGGTGCCGCTTACTTCAGCGTCGGAAATAAGAGG
AACCACTGCGATACACGACCTGAAGTTTCGTTTCCGTGGTATACTGTATC
AAACGGCAGTATTGCATGTATCCGCATTTTGTCTTTTTTTTTTTTTTTCC
TTTCCTCCTGTCAAGTACAACAGCAGTAACAGTAGTATATGTCCGCATTT
TGTCTTTTGTTTTTTTTCCCTCCTGTCAAGTACAACAGCAGTAGCAGTAG
CAGTAGCGGTATCCATCCGCATTTTTGTCTTTTTTTTTTTTCTTTCCCTC
CTGTCAAGTATAACAGCAGTAGAAAGCGGTTTGTTCCGCATTTTTGTCGT
TTTTTTTCTTTCCTCGTATACTTTCGCTTTTTCCACTTCCTACTTCGAAG
TATCAAGTGCGGCAGGTACATAGGATAGCTGATGTTTGGTCCTTCGTGTT
TTTATCATTGCAGGAGTATGAATCCGCATGTTGGCTTTCTGACTTTTTTT
TTCCTGTCAACAAGCACCAGTTTTTTTTTTTTATGCGGAGTCAACGCACC
CTCACATACACACGTGTGTTGAGTCCGTGTGACTCTCAAAACACATGCCA
TTTCAGTATCAACACAGTACCTGAATGTTTTTGGCACCCATCCCCCTCTT
TCTAGCAACGGCACCTTTTTTTTTGCATCCGTTCACGGTCTTATACGTAG
CAGTACCTTTTTTTTTTTACATCCGTTTACGGGAACGGGTCACGCTTCCT
TCTCGCGTGATTGGTGCGATTGTACGATACTTCGAAGTACTTCGTGCGGT
ACGATGCGCATATCTAGTCACGTACCTGAAATGTGTGTGTGTGTGTTCGT
GTGTGTATCCGTCCCATTGTTCTGGTGCCGGTCTGTACACCTTTCACCTT
TCGGTAGATATCCTTGACGTTCGGCCGGGGTCACACAGGATGAAGGTCAC
ACACCAGCTTTTCATTTTATTTGTTTTGTTTCTTTGCCCACACCTTTCCT
CCTCCTGCTGTGTCGCCCGCCTTCGATTTTCAATGCGAGTGAGTCGGGTT
TACGAGAAGCGATCCCTTCTCTCTGTTTACTCGCGAACAAATCGCTTTCC
GTCGTAAAAGTCGGGTTCTAATGCGAACGAGTCGGGTTCAGCAACCCCTT
CCCTCTATTCAATCACAGATAAACCGCTCTCCATCGTAAAGTCGAGTGCT
TGGTGCAAATTATTTTCGGCAGCTTCTCTATCGTGGCTGTGATTGGTGCG
ACTATACCGTACTTCGAAGCGCTTCCGTCCGGTATGATGCGGATATCACG
TACTTGAAGTACTTCGTGTAAATCGTATAAATCTTTTGTGTGAGCAGGTG
ATACCGTTCCACTCCGACCTGCCGAAGGAGGAGCTCATGCCGGCGTTCGG
GCCGGTGGGGGAGACAGTCGTCAAGATTGTCGTCGCAACGAACAGCGCCG
AGAGCTCCATCACCCTCCCCGACGTCGACAATGTCATTTGCCTGGGGTCT
TGCAAGGAGGTGCTGTGCTGTACTATACTGCACTGTACTGTACCGTACTG
AACTGGACTGCTGTACTACTGTGCTGCACTGCACTGCTGTACTGCTGTGC
TGTGCTGTACTGCTTGTACTGTGCTGTGCCGCAATGCACCGCACTGTGTG
CTGTGCTGTATTGTACGCATGTGTGTGGTACAGCCAGCAGGGGGGTCAGC
GTAAACCAAGTGTATATGTATGCCTTGAGGGGGGTAGTGCTCCTATTTGT
GAGTATGTGTTCTCGGGTCATGCTGGAAAGGGAGGGCAGGGCGGGGTGTG
GGTTCGGGTTGGGGTGGATTTTTTTTGTCGACTACTGCTGTGTTGTTGCT
TTTTTTTTATCTCGCTCTGTGACGTGATACTGTTGTACAATCACTCATCT
CCATCAGCCATCCAAGTGGACTTAGTGTGACGAAATAACCGCTTTCTCCC
TTTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TGTGTTGATCGCACGTCTTTCGTGCCACCAACCGATGAACGCACATACGT
GAGAGCAGATGGTGTTCGATCCCCAAACCAACCGCAAGACGCTCACTCCG
GTTTGGATATCCAGGGCTTCAGCGGTGCAACGGGCCGGCAGGTGTGTGCG
CCGTTTGTTGTTGCTGCTGCTGCTGCTGCTGCTACTACTACTTCTACTAC
CACTACTTCTGTACTACTTTTAATACTTTCGCTACTTCTTTTTCCAATGC
GACTAGTTTTAGTTCTGATACTGCTACGTACTACTTCGTGTTGCCGAGGT
TTGTTGTAACTGCCCCCTCCCTCAGCCCCCGATATGCTGTGTTGACACAC
GCCCCTCCTCCCCTCCCAACTCGCCGTTTTCAATAATTCGATTGATTTGT
GGACACTGGCCGTAGCGACATAGTAACCGTTGTGCGGTACATTCCCACAA
CGTCCGTCGAGGACGGATTCCCTCTTTTTACATTGGCGTCGACGACTAGA
TCCAAAGAAGTTGGGTTGTTCACGAACGCGGCGGAATAACTACTAATATG
CTGTTGCTGTTGGAGTTTGAGGCCGCAGCAGACTACAAGCACTACATATA
GGTTTGACAACCCGTAACCCGCGTTGTCAAACCTATCATCCCACGCGTAC
ATGTCGCACTACTGCGGCTTGTTTTGTCTCACAACGGACGAGCTCCGCGC
GGTATGTAGCCCATCCCCGTGCCCTCACCCCTCGCCAACCAAGAATATGT
TGGGGTGAGGAAGGGGGAATGAGGGTGGCTCTTGTCCCCGCGGAATGCCC
AAATCTAAAATCTAAAACCTGAAATCTAAATTAGATTTCGATTTTAGAAA
TGGGGTTGGGTCCACGCAGCTGCAGCTGCGTTCATCTAAAATCTAAAAAG
CGGAGGTACAATAAAAAAAATAAAAAGGAAGAGGAACAACCAGCAAGTCA
GAGGACAGGCGGTTGTGGAATAGCATGCAGTTACGATTGTTGAGCTAGTG
CGGGAGCTACCATGCCTCCAACGCAGTTCACGATAGTGCCCTTAATCGGC
CTGACTCAGGCGCGTTGGTTGTCCTTAGTTTGAGATCGATACCCGAAAAA
ACCATGAAGAAATGTGTGTTTGACTGCGTGTTGCTCACCAGCATACCCTA
CATTCCCCTACTGACCCCTTCCAGAGAGTCAACGAAGCCCACGCATTCAG
CCGTTGTTGTACATATTATCTGCAGAGCGACACCAGCTATGTTACTCGGA
TGAGTTCGTTTGCACCTCGGCAGACTCCCCTCGGATAGAGTTCCCTTCTT
TGCAGTTGGCATTACCATCTTCGTGTGGAGGTACCGTTTGTGTACAACAG
GCAGCTACAAGAAGTTGTGTTGTGAGTAAAAGCATATCGGTGTTGATATC
GAAATGCACAGCGGCACCACGCATGTATATTGCATATACTAGTATGAGAG
TCGTGAGCAACAACAGAACAGCAGGCGCTGCTGTCTGCACACTTCTGCAC
ACTTGAGTGGTGCTTTCCGGAATATTATCGGAATCCGCTGAAACAAAGTG
AACTGTATTATACGGGACACCAGCCTTCTGCCGAGGTCACACATACGTAC
AACAGGGGGATACAAGTTGGGCTGTCACCAACTAAACAAAGGCACATCGA
TGTGCACCGATGTGCTCCCAGAAAGCACAGCAAACACCCCTCTGCTCGTG
TTTTAGGTCTATTCGATTTTTGAGCCGCATTTTAGATTATGAACTCGGAT
TTTTTCGATTTTACCCTTTCCTTTAGCTTCCTGAGTGATAAGGGCGAAAT
CGAAAATCTCCTGGATGCGCCGCATGTGCGGAGGGAATTTTGGCCAACCA
GCAGTTTTTTAGATTTCGATTTTCGATTTCGATTGGGTTTTTTCCGGGGA
CAAGAGCCACCCTGAGTGAGTCGAGTGCTGAGCGGAACCCTCAGCAGATT
AAGCAGGTTCACATCATATATATCTCGAGTATATACTTCGAAGTATATGA
TATGATGGCGATTTTTTGCTTTTGCATTTCCGTCCTCGTTTAACCCTTCT
GGAACTTCGGAGGTGATAAATGCATCAAAAAATTTAATCATAATATTTTT
TTTTTTTCATACAAGCCAGTCTCTTCGGGACGGGGACAGAGACAAAAAAT
TCCCGAACCCCTCACGTTGGGAGTTGAGCAGCATTCCGGCTGCACCCAGA
TACGGGCAAGAGGACAAACAAACACCGCTCACAGCTGCTGCTGTGTGTGG
TCAAGGGGTGTGAGGGTGCCCAGCAAGACTCAGTCAACATAATAAATCCC
CGGCATGTCGAAATCTGAAATCATCTCTTCCGACACAGTGTAATACACAC
TTCGCAATGTATCATATTTTTCTGGAGTGCAACACCACACCATTATAGCA
GCACTACTCCTACTACAACTACTGCTACTACTGCCGCTGCTGTACACCAG
TACATCACATGCCATGTGATACCTCCTCCATTGTTGGTATGACACAACAA
GCAAGAAGAGTAATAGTAGTAGAGAGGTAGAGAGTCATACCTCTAGACTA
TGTATGATACATCATGGTATCTTATTTATTACTTCGAATCTTGTTTGGTC
AAAACCCAGCGACAAGAGCAGCAGCAGCATGTATGTAGATATTATGTAGA
TGCATGCGATTGGTTGCTAGATTACTACTACTGCGGCTGCGGCTGCGGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTAGTGCTACCATTACCAATGATGT
GCCTACTATGTGCGGGAAGGAAGGACCGGCCTTCAGGCCGGCCGCAGGCC
ACGGGGCCCCTGCGCAAAAAGTACGTTTACCAGGCCGGGAGCTACAACGG
GAAACGAGTAACTCCTTAGCAGTAACTCTTTTTCCTTATTATCTTGTTTT
GAGGGGACTGGGTACTTTAAGCGCTATTGATGGTCAGAACACGTTGCACG
ACGCCTGAGAGCTAGCCGCGGTATCTCGACCACCGGGTATCCCTTCTGTA
CTCTCCAGGGACGTAACCAGCCCGCTGTGAGCCCCTGTCAGGGGCCCTGG
CTGTATATCTTTGTGGTGCGGTTGTGTACATTTTCTCTTGGTTTCGTGAC
TGCTGTACATTTGAAAGGGACATTTGAGCCATTTTTTTTTTCTCGGGGGA
ACATTGTATGGTTCTCATTTGGAACCCGGACTGTTCGTGTGAAAAGGAAC
AAAACACCCTGGTCGCAGAAGGGTTAATACACTTCGTACAAACGGCACGA
AACAGCTCTCGCGTCGTTTTGTCTGTATTGTTATTTTCAACGTATTTCTG
GTTTATTTTCTGCCTCGTGTTACATGCAGAACCAAACAAGTGCAGGTAAC
ATTTTTATCTTCATTTTCACTTTCATTTCCGTTTTCATTTTCGTTTTCAT
TTTCATTTTCACTTTCATTTTCGTTTTCATTTTCATTTTCACTTTCATTT
CCGTTTTCATTTTCATTTTCATTTTCATTTTCATTTTCATTTTCGTTTTC
GTTTTCATTTTCATTTCCATTTCCATTTTCATTTTCATTTTCACTTTCAT
TTTCATTTTCGTTTTCGTTTCCATTTTCATTTTCATTTCATTTTCACTTT
CATTTTCATTTTCATTTTCATTTTTGTTTCCATTTTCATTTTCATTTTCA
TATTCATTTTCACCTTAATTTTCATCATTATTTTCATTTTCATCTTTAGT
TTCATTTTTATTTTTTTCCCGCCGAATCGTAGAACCGGGCGCGTGCGGCC
AGGCACCGTATACAGGCTGTACTCCAGGATAATGGGGGAGGAGATCATGG
CCGAGCACAGCATGTCGGAGATGCTGAGGCTGCCCCTGGACGCCCTCATC
CTGGACCTTAAGAACATGATGCCCGACAGTCCTGTCATTCCGATATTGGA
GGTCAGAGGTTGCGTTTTTTTTTTTGAATACCCAAAGCAACGAGTGGGTT
GCGAAGGTGTAATTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTTTTGTCATTGACGTTGTCGTTGTTGCTGTTGTTGTTGTTGTTGCTGCT
GCTGCCGCTGCTGCTGTTGTACCTTTTCCCAAACGTATGACCCAGCATTT
ACTGGTGTGTTGATGAGAGCCGTTTCCGCCCAGTATATTCCAGCCAAGCT
CTCATCGGAATGAAAAAAGAGAAAGAAAAACGGAATTACAGTATTTCCCG
CTCCTCGTCCCGCCTCCCTGCACTGCATCCAAACCCCGAACCAACGATCG
AAAAACAAAAACATGAACTTGCCAGAGCACCGTGGAGCCACCGAACCTCC
AGTCGGTGCACCGCAGCCTCGAGTCGCTGCACGCAATGGGCTTCATTTCT
TCGCCGAATGACGCCGGAGTTCTCACGGACACCGGGCGCTTCGCTTCCGG
GTTGGGGGTTGATCTGGAGCTTGGTCGCATGGTAAGAGGGGACAGGGGCG
GGGCTGGGCTGGGCTGGGCTGGGGTGGGTGGGTGGGTGGAGGGAGGGAAG
GTGTTTGTGGCACATGGGAGTCGCAGAGAAGTCAACCAAGCAGTCTTTCA
TGGCATCACCTATACAGAGCATATATTGTACTTGTATGTATGTAGCTTGG
CTGCATGACATGATGTTATACTGTAAGGAGAACGGGAAGCATCGACGGGG
AAATGAGGGCTAGGCTGGGCTGGGCTGTGTATTGGATTGGGCTGGGGTAC
GACAGATTGATGGGAGGGTGTGTGCGTGGCGGCAATGGCTGGAACGAACT
CAATCATTTTGTATCTGGAGACCAGGCATCCTCATTGAAAAAGTAGAAGG
GCTTCCATGGTGAAACTGGTAAGACACGGCAGATTCGAAATCTTGTTGTC
TTTTGACGTGCTGGCTCGAATCCACCTGGAAGTGCTAAGCATGATTCGAA
CTCAAACTCTTCTTGAAATTGTACAGGGTGATTCAGGAGCTAAAGTAGTT
ATTGCGGCACGTGTCGCCCTTCTTCACTCCTGTGTATGATGACTTGCGGT
ATGTAGACAGACACGAAGACGAGGGGGGAAAGCTGAAGCTACTCCTGATG
CCATGACGTCACGAACGATGCCGCACACCCGGGAAATGTGCAGCATCGGA
AGCTTTTGGTTGTGTTGTGTGCCGGGTGGGTTGGTGGGCGGGCGGGTGGA
TGCGTGGGTGGGTGGGTGGGTGGGTGGATCAAATCCATAGATGGATGGGT
CGGAAACGGCTTATAGACAGTGGTGGTTGAAATGACCAACCAGGGGGAGG
GAGGGAACTATGCCGAAATGATCATTTACGAAGTACACATCATAGTATGT
ATGCTGTTGAAACAATTGGTGGGTTCTTCCCCTGTTGGTTGTTCTGGTTA
CCGTGGAGGTAGTGTTTTCAATGCCCCCCCCCCCCACCCACCACCAACCA
CCCCCTGAGTACAAGCAAACAGTCAATCCAAGCGGCATCATCATAAAACA
AAAAACAACAAGCACCATGTTGGGGGTTGCGCTGCTGTGTGGTGCTGCTT
GCTTTGCACGTCTGTACGATTTTCGGGCTTTGGCGCTGCGCGGCCCGTTG
GTTCGCGCTGCTCCGACGGCCGCCCGGATGGGTGGGAGGCACGGCTGTGG
GCGAGCAACTGCTGCGATGCATGCGCGTCGTCATCGTCGTCGTCGTAACA
AACACAACTCGCACCTGCAACGACAAACACCACCACCACCACCACCACCA
ACAACAACAACAACAATAACAACAACAACAACAACGATTGTTTTTGGATG
CACAGGTCGCGCTTGGCGGACGTCTTGGGGTGTTGAGCGAGGCCCTGGCG
ATGGCCGTGGTTCTCTCCCACCCCCCGCCCTTCGTGAGGGCGTCGCACAT
GGTCACCGCCGACCCCGACGAGGCGAACGCTATCGTCGGCCGATCTTTCG
TGAGTTGCCGTTGTGCCGCCGCCGCAAAAGTTGCTGCTCGGAAAGATTCA
ACAAATATTTCATGAAAGTCTCGTCGGCAGAGGCAGAAGCAAAAGCGTTT
TCTTACGGCAGAAACACAAAAAAAAGTCTTTCGGCGGAAACAGATAAAAA
CTATTTCGTGAGTCTTGAAATTATTTGACCAATTTAGTACTTCGAAATAT
TTATTCGTTGATGTATTTATTTCATCCTCAGTTTTTTTTTAATTTTCGAA
TTGGTGTTTCTCCGTTCTTGTATGCAGTGTCAGAAACGATTGAAATCTCG
TCGTGAGTCGGTCCCTGTTGAGGAACCAGTTCTGGCGGCCCTGCTGCGGC
TACTACGGCTGCTGTAGTAGTGCTGTCGTTTTTTACCGTTTTACATGTTG
CTCCTGTCACGTCTTATCAGACACATGGAGCTTTTTGTTTTCTGTATCCG
CAGTCCTGCGGCGTGTACGCTGCTTGTGGCATTCTTCAAGGTTGCTTTTG
TCTTTCTCTACCAAGCCCGCGCTTTTTTGCGTCCTCATTTTTTTTAAAGG
TTTGTTGTTGTTGTTGTTGTTGTTTAGTTGTTGGTGGTGGTGGGGGTGGT
GGTGTATGTTGGTCTTGTTCTTGTTGTTCGTGTTTTCTCCTTTTTCACTT
CTTCATCTGATATTGTTGTTGTGTGTCGTCAGCGTTTTCATCTTTTTTTA
TTTCTGATGCGTTGTACCGGTTGCCGGTAGTTGCTAGTCTAGTGTTGTCC
TTGTCGTTGCGTTGTCGTCGTCGGTGTTGTTGTGTATTGTTGCTTTATTC
GTTGTTGTCAATGTTTTTGTGTCATCTCCCTTTCCCCTTTTCTTGTCCTG
ATTTATTGTATCGTTGTTTGTTGTCGGTTTTGTTTTCGTCTGCGGTTGTT
TTTTCCAGCTGGCGCAGTCCGTGTTCGATCGCGGCCTGTACTCCGACACC
CTCGCGTCAGTAAGGGTGCTGCGCGAGTACCTCGTCCGTGCCGTGGCCGG
CAACACGCCGCAGAAGTCGTTCTGCAGGCTCTTCTCGCTCAGCTACCCCC
GGATGGAGCAGCTCGTCTCCACGCTGTATGTCATCAACAGGTATGTATGA
TACAACATGAAAGGATCACGTTTTGCTCGCTTCTTTTCGGCACCATTTGC
ATCTTTTGCTGGGGGGGGGGGGGGGATGGGGGAGTCCCAGTAAGTAGCGT
CCGTGGCTTGTTTTGTAGATAATATTTTTTGCTTTTTTCATAATTTTTTT
ATTGAAATTGAAGGCCCGTCCCACGATAGGAGGGGTACCCCCGATTGCAA
CCTGCTAGGCCGAAAAGGGCTGTGCTCATAATTGCCCGTGTACATCTTTC
ACAGTGAACACGATTTTTCAGAAGTGGTTCCTGACAGACAGCGCGCTGCA
CGCGTGTCTGGTATGATCGTGTTGAAGAGTGAGCCCCCTATCGTGGGATG
GGGCGTCCCGAGGAAGAAAGAAGAACTTTCGTGTTGTCGTTTGGTGCGCA
TATCATATGATATCATACATATATACCTGGTATCACATTGCATCAGTCCT
GACCGTGTCGTGTCGAGGTTGTCGACGGTCCATGAGTCTTTTTGAGGTGT
CAATGCCGCGTGAAGATCATTTTTGTGTTGAGATCTACTATGTATATTCA
CATCAGTCTCTGGGTGGTGTCGTATCGCCGTTGTTGGCGGTTTGCTAAGG
TCTGTGTAGCAGTTCCCGCGTTGTGTGTGTGTGTGTGTGCTTCTAGGGGG
CCGGGAGGCAGGCCTCCAAATCCCGAGCCCAGCTATAAAACAAGCCCGAA
ACTCTTCAAAAGGGTACGCGTTGTTGCAGGCCTCCAAGTTCCGAGCCCAG
CGGCAAAACAGGGTCAAAACAATGGGAAAAATTGTGCGTTGTTTTAGACG
AAAGGTACACACGAGTATGTATAGCATCGCTCTCTCTCTCTTGTATACAT
TGCATCGCGGGGCAATACCGGGCCTCCACAGAGGCGTGGCCGACAGAGGA
ACGGGTGTCCTTTGATACCAGGTACCGCTCCTCCAGACTATTGACGGGCA
TCGTTTTTTTGTGGGCAAACGCCAAGAAGCGGTAAACCGCCATGGTTCCG
CGCCACAAAGCGGCACACCAAATTACACCTTGGCATTTGAGCCCCGTTCG
CGTCGCTGATTGGCCAACTCAGCCTCGTACCGCTTTCTGGCACCAGCAAC
CGGCGGTATATCACTTTTGGTCTTCTCAGGTCGGCCTTCACCGCTTTTTG
GCGTAACCCACACCGCTTTCTGGCGTGATATTCTGCAGACCATTCGCCGA
ACAGCCCTCTCCACTTTCATACCACACGCCACACCATCGATCAACCAAGG
GAATAGATGAACCAAGAAAGCCACGTCACGGCGTGAGCTCCACGTCGTAC
CCCCATACCCCACACCGATCCCTGCAGGATGGTTGGTGCCGATGTGCGTG
ACAGAAGACCAAATCAATCACCAATTATACGAGTAAAAGGAAGGGGAATG
GAACGCTCCAAAATGGAGTGTCAAATTTGTCTCAATCCAAGCCTACCAAT
CAATGCGCAAAGGATGTACAAGTTGTAGGCATTGCATGTAGGTAGGGTGG
AAGGATGGAAACCGAAGAGTCTGTCCAATCAGCGGTGCGTCATTAATGTG
TGCAGGTGTTTGCCCTCATGCGCTTAAGACGCGGGCAGGGCGGTGTGGCG
ATCGCGTGCGCCATCACTGGCACGTATGTACGCGTGCCCTCTGTGCGATC
ATGAGGGTGCCTGGGGTCACGGCTTGACAGCAGTGCGTCGATATTGGTGA
TCGATTTGGTATTCTATCACGCATATGCCGGTCGCCCTGGTGGTTCAGTT
GGTAATCCACGCAACCTTCTGACATTCACGCGTGAGTTCAAATCCCAGTG
CAGCAACACGACCGGGCTTTTCTTCTCACAATGCGCGTGAAAGTGGAAAG
CGATTAATTCGTGGGTAAACAAAATTCGATCGTACCATCGAGGAGGGAAA
GGGATTATTGCTGTCCCCTTTCTCGCGATATAAGCTCTTATCAACCAAAC
AAGGCAAGCACCGCAGAGGGAAGTAGTGGAGAAAAAAAAAAACTCTTGTA
TTGACTTCCCCCTGTGTGACCCCAGTTGGAGCGTCGACCTACCCGAAGGA
GCAGAGTGGCGTCCAATTAAAGGGATGACAACACACACACACATCGGCAC
CAACCATCCTGCAGGGATCGGTGTGGGGTATGGGGGTACGACGTGGAGCT
CACGCCGTGACGTGGCTTTCTTGGTTCATCTATTCCCTTGGTTGATCGAT
GGTGTGGCGTGTGGTATGAAAGTGGAGAGGGCTGTTCGGCGAATGGTCTG
CGGAATATCACGCCAGAAAGCGGTGTGGGTTACGCCAAAAAGCGGTGAAG
GCCGACCTGAGAAGCCCAAAAGTGATATACCGCCGGTTGCTGGTGCCAGA
AAGCGATACGAGGCTGAGTTGGCCAATCAGCGACGCGAACGGGGCTCAAA
TGCCAAGGTGTAATTTGGTGTGCCGCTTTGTGGCGCGGAACCATGGCGGT
GTACCGCTTCTTGGCGTTTGCCCTTTGTTATTGTTAAGACACGAAGAGAC
ATTCAAAGAGGGGGGCATATTGACAGGCGTCTTCATGCTTTGCGACGTGT
TTTTTTTATCGTATGATATCACAACCGCCCTTTTGCCGGAATAACTTCTT
TTTGTTCTTTTTTTTTTCTCCGGCAAGTGAGTTCGCAGTAAAACTTCGTT
TTTTCGTTTTGATTTCTTATTTTTTTATTTATTTTATTTTTTCTATGATT
GCCGCATGCATGGGGCACGAATTCACACGGACAACAAGCTGCAGTCGACT
TGGTAAAAAAGCGTACAGCAGTACAAGTAGCGTTTTTGTTGTCAAAAAGC
CCCCACGTGACTCCAAAAACATTGAAAAAAGTCTTGTTTTATTTTTATTT
ATTTATTTATTTTTATTTTTTTGCGTGTTCATATATACATGCTGCAGCCG
AGCCGAAGACCTGGCCGGCGAAGCGATTCCGATGGTGCCGCGCGATCCGG
CCAGCGACGCCGATCTGGCGAACACTCTCCGGCTGCTCCTCGCCTGGACC
TTCCCACGAAACGTGAGTTTCTGTCTTGATCATTCTCTCTTTCTTCTTCC
TTCTTTCCGAAGTGTCACTGCTGTGACCTTTGTCGATGTCGATCGGTCAG
TACATTTGACCTAAGGTTGTATTCTCTGTCACTCCTGCTCAGGGAGGGCA
TCGTGCGTAGCGGGTAGAGATAAACAAGGGGGAGATGGCGTTCTCTCGCG
CTGTAAGTTGTAGCTAATGGCGGTGCGCTGTTCTAATTTTTTACGTGTCC
TGACTTGATTAGCTGCCGTCTTGTTTCGTCCGAAGCTGATGTTGTTTGTT
GCATTTGTTGTTCCGCGTGTCTTTTGAACCGTTTCTTCTCAGCCTGTCTT
TGCCCGCCTCGCCTGCCTCGCCTGCCTCGCCTGCCTCACTTACCTTGCCT
GCCGTGCCTGCCCTGCCGGCCTTGCCTACTCTGCCCGCCCTTTGTTCCGC
ACGTTTTTTGTACCCCTTTTTGTCCACCTGTATTTGCCTACCTCGCCTGT
CTTGCCTGCTTGTTTTTCCGCGCGTTTTTTTTGTACCTCTTTTTGTCCGC
CTGTCTTTGCCTACCTTGCGTGCCAATCCGCGCGTTTGCCGCGATACCTC
TTGTTGTCCGCCTGTCTTTGCCTACCTTGCGTGCACCAATCCCCTCGTTT
TTTGTGCCTCTTTTACGGTCCGCCTGTCTTTGCCTACCTCTCCTGCCTTG
CCCGTCTTGCATGCTTGTTGTCCCGCGCGTTTTCCGCGGTATCTCTTTTT
GTCCGCCTGTCTTTGCCTACGTCGCGTGCCAATCCGCACATTTTTGTGTC
TATTTTTTTTGTCTGCCTGTCGTTGCGTCCCTTGCGTCCCTTGCGTCCCT
TGCGTCCCTTGCGTCCCTTGCCTGCCTTGCCTGCCTTGCCTGCCTTGCCT
GCCTTGCCTGCTGCTTGACCGCGTGTCCCTTCTCCGCTTGTCTGTTTTTT
TGTTTTTCCTTTTTCCCGTCGTTGCTTTGCACAGCTGATCAAGATGAAGG
TGGACACCAAGCGCCACGCGAGCGTGTTGGACCTGAAGGACACGGGCAGG
GCGGTGCAGGTCGGTCTGCAGGGCCACGCGATCAAGTCCAAGAACCTCAA
GTACCTCATCCCCGCGGGTGAGTTTTCGTGTTAGATTCGGCGCACAGGCA
AATACAGCACGTGGCAAAAGCTCTGACGCCGAAGTGGTACCGTACCTGTT
TTCGTTTTCTTGACCTCGAAGAAGGGTCGAAACCCGCGCGAGATTTTTGC
ATGTCGCACAAGGACAACCACGATGGTAACCAACAGCCCGAAGAAACGAC
CACACTAACAACCCGCCCACAAACAAAGTGACAGAACGCTCACCACCAAT
AATCACCAGCCCCCAGACAAACAATGCACCAACAACCACCCCTCCCGCCC
TAATCAAACAATTACGTAACCCCCAATTAAACAACCATCCTCACAACGAA
ATGATAACACCAACACCAACAACCCCCCCCCCCCCAACCAAACAAACAAG
TGTACCCGGGCATGAAGAAGATCGACGTGCGACCGCTGCAGCCTTTCTAC
AAGTCTGTCTACCAGACCCCGAGCCGCATGAGCGTGGGGCCCTTCGTGGC
AGCCTGGCGGCTCTGGAACGTCCTGAACGAGCTTAGAGGGCAGCCCTCCG
CCTCCCCCCCCTCCACCTCCTCCTCCTCCGCCGCCACCACCACCACCACC
ACTTCTACAACCTCATCTCCTCCTGTAGCAGACGACCAGAGCGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGCGAATGAGGTCCAAGCAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig209:345184..362175-

>mRNA_P-littoralis_Contig209.62.1 ID=mRNA_P-littoralis_Contig209.62.1|Name=mRNA_P-littoralis_Contig209.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2478bp|location=Sequence derived from alignment at P-littoralis_Contig209:345184..362175- (Pylaiella littoralis U1_48)
GCAAGTGTGAACAGGGGGGACCAGAGCAGAGACAGCAGCGACAGCGAGAG
AAATCGCGGGAGCAGAGAGGACGTTGGGAGTCAAGCAGCCGAGACGCAGG
CTCCGCCGCCGCCGCCGCCACCGCCAGTGGTCTTGCCGATTGACACCTAC
CGGGAGGAAATCCTGGAGCACGTGAGAAACAACCGCGTAACGGTCATCCA
CGGCGAGACCGGCAGCGGAAAGAGCACACGGATCCCGGTCATGCTCGTCG
AAGAAGCTTTGGACCAGATGGCTGCAGCAGCAGCAGCAGCGGAGGCGGGG
GGGGCGGGGCCGGATGCGGGTGCAGGTGCGGGTGCGGCGGGATCGGCACC
GGTTCGGCGGCCGAGGATGTTCGTGTCTCAGCCCAGGCGGGCGGCGACGC
GCGCCCTGGTACAAAGGGTGAAGCAGGAGGCCGAAATCTCTGGGAGAGGG
TGGGGCGTCGGGATGAGGCTCGGGCACGGGGTGCGGGAGGGGCCGCCGAG
GGCTGAGGTGACGTTCGCCACGACGGGGTACCTGGCGAGGCTTCTCGCGA
GATACCCGGGGGTGTTGAACTCTCACACGCATCTCATCATCGACGAGGTG
CACGAGCGGTCCGTGGATACCGACCTGCTGTGCCTGTTCGCCAAGAGGCT
GGTCGAGACGCACCCGACCCTTCGCCTTATCGTCATGAGCGCCACCCTTT
CAGCCAACCTCATCAGCGAGTACTACGGGCTGAAGTCTGCCCCGCTCTTT
GTCGGGGCAAGACGGTTCCCGGTCAGGCAAGTGTACGTGCACCAGCTCGC
CGAGAAGCTTTCGTACCGCAAGGTGCTGAAGACGGCCTGCGACAGCATTG
AGCTCGCCACCAGCGACTCGAACGCCAAGGTTACGTCTAAGGTACACAGC
TTGCAGACCAACCTGGCCGTGCAGGTGGCCAGAGCGATCGGCTCCCCGGG
CTCCGCCGTGCTCATCTTCGTCCCGGGCATGGCGACCATCCTGGAGATCA
TGAATCTCTTCGAGCTAATCTCGTCCGCGGATGTCACCTACAAGGTGATA
CCGTTCCACTCCGACCTGCCGAAGGAGGAGCTCATGCCGGCGTTCGGGCC
GGTGGGGGAGACAGTCGTCAAGATTGTCGTCGCAACGAACAGCGCCGAGA
GCTCCATCACCCTCCCCGACGTCGACAATGTCATTTGCCTGGGGTCTTGC
AAGGAGATGGTGTTCGATCCCCAAACCAACCGCAAGACGCTCACTCCGGT
TTGGATATCCAGGGCTTCAGCGGTGCAACGGGCCGGCAGAACCGGGCGCG
TGCGGCCAGGCACCGTATACAGGCTGTACTCCAGGATAATGGGGGAGGAG
ATCATGGCCGAGCACAGCATGTCGGAGATGCTGAGGCTGCCCCTGGACGC
CCTCATCCTGGACCTTAAGAACATGATGCCCGACAGTCCTGTCATTCCGA
TATTGGAGAGCACCGTGGAGCCACCGAACCTCCAGTCGGTGCACCGCAGC
CTCGAGTCGCTGCACGCAATGGGCTTCATTTCTTCGCCGAATGACGCCGG
AGTTCTCACGGACACCGGGCGCTTCGCTTCCGGGTTGGGGGTTGATCTGG
AGCTTGGTCGCATGGTCGCGCTTGGCGGACGTCTTGGGGTGTTGAGCGAG
GCCCTGGCGATGGCCGTGGTTCTCTCCCACCCCCCGCCCTTCGTGAGGGC
GTCGCACATGGTCACCGCCGACCCCGACGAGGCGAACGCTATCGTCGGCC
GATCTTTCCTGGCGCAGTCCGTGTTCGATCGCGGCCTGTACTCCGACACC
CTCGCGTCAGTAAGGGTGCTGCGCGAGTACCTCGTCCGTGCCGTGGCCGG
CAACACGCCGCAGAAGTCGTTCTGCAGGCTCTTCTCGCTCAGCTACCCCC
GGATGGAGCAGCTCGTCTCCACGCTGTATGTCATCAACAGCCGAGCCGAA
GACCTGGCCGGCGAAGCGATTCCGATGGTGCCGCGCGATCCGGCCAGCGA
CGCCGATCTGGCGAACACTCTCCGGCTGCTCCTCGCCTGGACCTTCCCAC
GAAACCTGATCAAGATGAAGGTGGACACCAAGCGCCACGCGAGCGTGTTG
GACCTGAAGGACACGGGCAGGGCGGTGCAGGTCGGTCTGCAGGGCCACGC
GATCAAGTCCAAGAACCTCAAGTACCTCATCCCCGCGGTGTACCCGGGCA
TGAAGAAGATCGACGTGCGACCGCTGCAGCCTTTCTACAAGTCTGTCTAC
CAGACCCCGAGCCGCATGAGCGTGGGGCCCTTCGTGGCAGCCTGGCGGCT
CTGGAACGTCCTGAACGAGCTTAGAGGGCAGCCCTCCGCCTCCCCCCCCT
CCACCTCCTCCTCCTCCGCCGCCACCACCACCACCACCACTTCTACAACC
TCATCTCCTCCTGTAGCAGACGACCAGAGCGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGCGAATGAGGTCCAAGCA
back to top