mRNA_P-littoralis_Contig209.50.5 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig209.50.5
Unique NamemRNA_P-littoralis_Contig209.50.5
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.850e-31
Identity = 75/158 (47.47%), Postives = 97/158 (61.39%), Query Frame = 1
Query:  580 TAGGDLRWKCHFITRESWSDLGACILEFVSIYRYLFEARNVFRVDADSSNSRRFINPRTFSQDILEHRFAHIRAGLGTLRNSTAAMAKQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERAATVRAHSRKYSCAVLCPRHLT 1053
            T  GD  WK HFIT  SW+D+  CIL FVS+ RYLFE  + F+V         FIN R   QD++EH F H+R GLG+ RN TAA AK+     D+ RGLHG  R N NRNAR+G DF   G+R  +ML V + ER+  +RA ++    AVL P +++
Sbjct:  599 TTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPH-FINQRNCGQDVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYIS 755          
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 5.590e-28
Identity = 71/125 (56.80%), Postives = 82/125 (65.60%), Query Frame = 1
Query:  763 QDILEHRFAHIRAGLGTLRNSTAAMAKQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERAATVRAHSRKYSCAVLCPRHLTSEPLSGGPRG*LAVSLHSDRTSRVANPH 1137
            Q ILEHRF  +RAGLGTLRN TAA AK+ SV  DLNRGLHGGSR N NRNAR G DF    +R  IML VT AE A  VRA SR    AVLCPR+++ EPL+  P     V   +  +S + NP+
Sbjct:  237 QIILEHRFKDVRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPVPA-AQGSSTIVNPY 360          
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 6.220e-27
Identity = 82/188 (43.62%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  574 PPTAGGDLRWKCHFITRESWSDLGACILEFVSIYRYLFEARNVFRVDADSSNSRRFINPRTFSQDILEHRFAHIRAGLGTLRNSTAAMAKQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERAATVRAHSRKYSCAVLCPRHLTSEPLSGGPRG*LAVSLHSDRTSRVANPH 1137
            PPT GGD+ WK HFITR S                                        RT          AHIRAGLGTLRN TAA AK+ SV  DLNRGLHGGSR N NRNAR G+DF    +RG IML VT A  A  VR+ SR    AVLCPR+++ EPL+  P    +V   +  +S + NP+
Sbjct:  893 PPTGGGDVGWKKHFITRHS----------------------------------------RTLV-------CAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVETSVPA-AQGSSTIVNPY 1032          
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.710e-19
Identity = 68/162 (41.98%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  589 GDLRWKCHFITRESWSDLGACILEFVSIYRYLFEARNVFRVDADSSNSRRFINPRTFSQDILEHRFAHIRAGLGTLRNSTAAMAKQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDA-ERAATVRAH----------SRKYSCAVLCP 1041
            G   W  HFIT  SW+D+   IL FV++ RY+F+       D D  +  RF+ PR FSQDILEHRFAHIR+G GT +N TA  A + +   D  R  HG  R NS+R+A  G  F+    +G       +A ERA  VRA           SR + CA  CP
Sbjct:  524 GPKEWANHFITDYSWTDMRTTILGFVAMCRYVFK-------DEDLVSGGRFLYPRMFSQDILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSA--GMAFQLEDSQGVRAAFPANASERAQVVRAETRDDAHHVFESRSFRCAEGCP 676          
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.260e-17
Identity = 62/142 (43.66%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  580 TAGGDLRWKCHFITRESWSDLGACILEFVSIYRYLFEARNVFRVDADSSNSRRFINPRTFSQDILEHRFAHIRAGLGTLRNSTAAMAKQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERAATVRA 1005
            T GG  +W  HFIT  SW D+ +CIL FV++ RY+F  R++  V+ +    RRF+ PR FSQDILEHRFAHIR G+GT +  TA  A + +   D  R  HG  R N++R+    E       R  + L V  +ER   VRA
Sbjct:  742 TFGG--KWAPHFITDVSWKDMRSCILGFVAMSRYIFADRDL--VEEEGGVPRRFLYPRMFSQDILEHRFAHIRTGMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGSFEVQSSASIR--VALPVNASEREEVVRA 877          
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.530e-16
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  793 IRAGLGTLRNSTAAMAKQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERAATVRAHSRKYSCAVLCPRHLT 1053
            +R  LG+  N  AA AK+ +   DL R LHG SR N N+NAR+GEDF   G RG IML VTDAER+AT+RA SR    AV+ PR+++
Sbjct:    1 MRQSLGSHSNPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYIS 87          
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.300e-12
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1
Query:  859 RDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERAATVRAHSRKYSCAVLCPRHLT-----SEPLSGGPRG*LAVSLHSDRTSRVANPH 1137
            RDLNRGLHGGSR N NR +R+G DF   G RG I+L VTD ER+AT+RA SR  + AV+ PR+L+     ++P   G     +    + +   V NP+
Sbjct:   88 RDLNRGLHGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPY 185          
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.030e-5
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 3
Query:  423 GNSGRSRFERRGGLKKMKGYVTLADNPIIDRLMEILEF*NDWQENLQESPPPHGRG 590
            GN GRS+ +R+ G KKM G +   ++  +DRL+EILEF +DWQ  L+    P G G
Sbjct:   65 GNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEG 120          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE3.850e-3147.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6I9_9PHAE5.590e-2856.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI6.220e-2743.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7Z3_9PHAE5.710e-1941.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE1.260e-1743.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE2.530e-1654.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZP5_9PHAE1.300e-1245.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE3.030e-546.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig209contigP-littoralis_Contig209:294808..296355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1416
Hectar predicted targeting categoryother localisation
Exons2
Cds size546
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790015.447913-UTR-P-littoralis_Contig209:294807..2953471680790015.447913-UTR-P-littoralis_Contig209:294807..295347Pylaiella littoralis U1_48UTRP-littoralis_Contig209 294808..295347 +
1680790015.5353136-UTR-P-littoralis_Contig209:296025..2963551680790015.5353136-UTR-P-littoralis_Contig209:296025..296355Pylaiella littoralis U1_48UTRP-littoralis_Contig209 296026..296355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790015.4616144-CDS-P-littoralis_Contig209:295347..2955721680790015.4616144-CDS-P-littoralis_Contig209:295347..295572Pylaiella littoralis U1_48CDSP-littoralis_Contig209 295348..295572 +
1680790015.476136-CDS-P-littoralis_Contig209:295704..2960251680790015.476136-CDS-P-littoralis_Contig209:295704..296025Pylaiella littoralis U1_48CDSP-littoralis_Contig209 295705..296025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig209.50.5prot_P-littoralis_Contig209.50.5Pylaiella littoralis U1_48polypeptideP-littoralis_Contig209 295348..296025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig209.50.5

>prot_P-littoralis_Contig209.50.5 ID=prot_P-littoralis_Contig209.50.5|Name=mRNA_P-littoralis_Contig209.50.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=182bp
MIGRKTYRNPHPPTAGGDLRWKCHFITRESWSDLGACILEFVSIYRYLFE
ARNVFRVDADSSNSRRFINPRTFSQDILEHRFAHIRAGLGTLRNSTAAMA
KQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERA
ATVRAHSRKYSCAVLCPRHLTSEPLSGGPRG*
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mRNA from alignment at P-littoralis_Contig209:294808..296355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig209.50.5 ID=mRNA_P-littoralis_Contig209.50.5|Name=mRNA_P-littoralis_Contig209.50.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=1548bp|location=Sequence derived from alignment at P-littoralis_Contig209:294808..296355+ (Pylaiella littoralis U1_48)
AGAGGGAGAGCCGGTGGACCTTTCGCTAGAGGCCTACGAAGCATTGGCTA CCAACATGAACGACTTCGTTGATATATTCAACGGTGAGAAACTCAGCCAT TTTTGTGGGCCCCACCTGTCATCACAAGGCGCCAGCATCAGGGAAGCATT TCAAAAGAGAGTCTGACCAACACGTGGCGGGCCCCCAGAAACGTCAGCGC CTGGTGAAAAATATTACAAACCTTGAGACATTCGATTTTTTGCCGAGTTT CGAACTTCTTTGTTTGCGTTTCGGAGATGGTCACAAGGACGTTATGTCAC GAAGACATTGTTTTGAGATTTTCTTTTTCACGAGGGCAAGAGCAATCTGG CTTTATCGAGGGACTCGAGTTGGGACAAAATTTGCCTCCGAATTTTCGCG TGCCCGATTTCTAAATCGATTAGGAAACTCCGGTCGGTCACGATTTGAGC GCCGCGGTGGCCTCAAGAAGATGAAAGGGTATGTCACATTAGCCGACAAT CCCATCATCGACCGGTTGATGGAGATCCTTGAATTCTAAAATGATTGGCA GGAAAACCTACAGGAATCCCCACCCCCCCACGGCAGGGGGCGATCTGCGG TGGAAATGCCATTTCATCACCCGGGAGTCTTGGTCCGACTTGGGTGCATG CATCCTAGAGTTTGTGAGCATCTACCGTTACTTGTTCGAGGCGAGGAACG TATTTCGGGTCGACGCGGATTCGTCGAACTCTAGACGCTTCATCAACCCG CGGACATTTAGCCAGGTGTGTCTGCGGGTAATGACATGACAACTAGGGAC TGGACCTGAAGGTAAAATGTTTGGCCTCCTCACTCACCGTAAGCTTTTTG ATCCCGCCCCATTAAATTTGTCCCAAACGCTTACTTTTCTGTCTTAGGAC ATCCTGGAACACCGGTTTGCCCACATTCGCGCTGGCCTCGGGACCCTCAG AAATTCCACGGCGGCAATGGCAAAGCAATGCTCGGTACTTAGGGACCTGA ACCGAGGACTTCACGGGGGTTCTCGAATGAACTCAAACCGAAACGCGCGA CGAGGAGAAGACTTCGAGTTCGGGGGATTCAGGGGAGCAATAATGTTGAC GGTGACAGATGCAGAAAGAGCTGCTACCGTACGCGCCCACTCTAGAAAAT ATTCATGTGCGGTCCTGTGCCCGCGTCACCTGACCTCCGAACCTCTTTCA GGCGGCCCTCGAGGTTGACTCGCCGTCTCCCTCCACTCCGACCGCACGAG TCGTGTTGCGAACCCGCACAGGAACTAAGTTGCCCACGGCGTATGGAGAC TGGCACATACGTTATGGGTTCAGGTAGCTCGTTGTGTTGCCGAAGTTGTC TTCACCGCAGACGTTGCGAGTGAGGGCCGGTTTTGTGTTTCAGTGTGTCG ATTGGATGGGGGAGTCGTACATGAACAGTCGTGAAGGTACACGTGTTTTA CGTGAAAACATCCAGTATTCGTGATGAACGTGTTGACAACTTCCTTCGAT GGTCAGTTTTGCCGCATGCTAATATGGGTATCATGAGTTGATAGCGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig209:294808..296355+

>mRNA_P-littoralis_Contig209.50.5 ID=mRNA_P-littoralis_Contig209.50.5|Name=mRNA_P-littoralis_Contig209.50.5|organism=Pylaiella littoralis U1_48|type=CDS|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig209:294808..296355+ (Pylaiella littoralis U1_48)
ATGATTGGCAGGAAAACCTACAGGAATCCCCACCCCCCCACGGCAGGGGG
CGATCTGCGGTGGAAATGCCATTTCATCACCCGGGAGTCTTGGTCCGACT
TGGGTGCATGCATCCTAGAGTTTGTGAGCATCTACCGTTACTTGTTCGAG
GCGAGGAACGTATTTCGGGTCGACGCGGATTCGTCGAACTCTAGACGCTT
CATCAACCCGCGGACATTTAGCCAGGACATCCTGGAACACCGGTTTGCCC
ACATTCGCGCTGGCCTCGGGACCCTCAGAAATTCCACGGCGGCAATGGCA
AAGCAATGCTCGGTACTTAGGGACCTGAACCGAGGACTTCACGGGGGTTC
TCGAATGAACTCAAACCGAAACGCGCGACGAGGAGAAGACTTCGAGTTCG
GGGGATTCAGGGGAGCAATAATGTTGACGGTGACAGATGCAGAAAGAGCT
GCTACCGTACGCGCCCACTCTAGAAAATATTCATGTGCGGTCCTGTGCCC
GCGTCACCTGACCTCCGAACCTCTTTCAGGCGGCCCTCGAGGTTGA
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