mRNA_P-littoralis_Contig209.50.5 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE) HSP 1 Score: 137 bits (346), Expect = 3.850e-31 Identity = 75/158 (47.47%), Postives = 97/158 (61.39%), Query Frame = 1
Query: 580 TAGGDLRWKCHFITRESWSDLGACILEFVSIYRYLFEARNVFRVDADSSNSRRFINPRTFSQDILEHRFAHIRAGLGTLRNSTAAMAKQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERAATVRAHSRKYSCAVLCPRHLT 1053
T GD WK HFIT SW+D+ CIL FVS+ RYLFE + F+V FIN R QD++EH F H+R GLG+ RN TAA AK+ D+ RGLHG R N NRNAR+G DF G+R +ML V + ER+ +RA ++ AVL P +++
Sbjct: 599 TTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPH-FINQRNCGQDVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYIS 755
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE) HSP 1 Score: 124 bits (311), Expect = 5.590e-28 Identity = 71/125 (56.80%), Postives = 82/125 (65.60%), Query Frame = 1
Query: 763 QDILEHRFAHIRAGLGTLRNSTAAMAKQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERAATVRAHSRKYSCAVLCPRHLTSEPLSGGPRG*LAVSLHSDRTSRVANPH 1137
Q ILEHRF +RAGLGTLRN TAA AK+ SV DLNRGLHGGSR N NRNAR G DF +R IML VT AE A VRA SR AVLCPR+++ EPL+ P V + +S + NP+
Sbjct: 237 QIILEHRFKDVRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPVPA-AQGSSTIVNPY 360
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 125 bits (314), Expect = 6.220e-27 Identity = 82/188 (43.62%), Postives = 96/188 (51.06%), Query Frame = 1
Query: 574 PPTAGGDLRWKCHFITRESWSDLGACILEFVSIYRYLFEARNVFRVDADSSNSRRFINPRTFSQDILEHRFAHIRAGLGTLRNSTAAMAKQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERAATVRAHSRKYSCAVLCPRHLTSEPLSGGPRG*LAVSLHSDRTSRVANPH 1137
PPT GGD+ WK HFITR S RT AHIRAGLGTLRN TAA AK+ SV DLNRGLHGGSR N NRNAR G+DF +RG IML VT A A VR+ SR AVLCPR+++ EPL+ P +V + +S + NP+
Sbjct: 893 PPTGGGDVGWKKHFITRHS----------------------------------------RTLV-------CAHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVETSVPA-AQGSSTIVNPY 1032
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE) HSP 1 Score: 100 bits (250), Expect = 5.710e-19 Identity = 68/162 (41.98%), Postives = 86/162 (53.09%), Query Frame = 1
Query: 589 GDLRWKCHFITRESWSDLGACILEFVSIYRYLFEARNVFRVDADSSNSRRFINPRTFSQDILEHRFAHIRAGLGTLRNSTAAMAKQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDA-ERAATVRAH----------SRKYSCAVLCP 1041
G W HFIT SW+D+ IL FV++ RY+F+ D D + RF+ PR FSQDILEHRFAHIR+G GT +N TA A + + D R HG R NS+R+A G F+ +G +A ERA VRA SR + CA CP
Sbjct: 524 GPKEWANHFITDYSWTDMRTTILGFVAMCRYVFK-------DEDLVSGGRFLYPRMFSQDILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSA--GMAFQLEDSQGVRAAFPANASERAQVVRAETRDDAHHVFESRSFRCAEGCP 676
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 1.260e-17 Identity = 62/142 (43.66%), Postives = 82/142 (57.75%), Query Frame = 1
Query: 580 TAGGDLRWKCHFITRESWSDLGACILEFVSIYRYLFEARNVFRVDADSSNSRRFINPRTFSQDILEHRFAHIRAGLGTLRNSTAAMAKQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERAATVRA 1005
T GG +W HFIT SW D+ +CIL FV++ RY+F R++ V+ + RRF+ PR FSQDILEHRFAHIR G+GT + TA A + + D R HG R N++R+ E R + L V +ER VRA
Sbjct: 742 TFGG--KWAPHFITDVSWKDMRSCILGFVAMSRYIFADRDL--VEEEGGVPRRFLYPRMFSQDILEHRFAHIRTGMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGSFEVQSSASIR--VALPVNASEREEVVRA 877
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 2.530e-16 Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 793 IRAGLGTLRNSTAAMAKQCSVLRDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERAATVRAHSRKYSCAVLCPRHLT 1053
+R LG+ N AA AK+ + DL R LHG SR N N+NAR+GEDF G RG IML VTDAER+AT+RA SR AV+ PR+++
Sbjct: 1 MRQSLGSHSNPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYIS 87
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 1.300e-12 Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1
Query: 859 RDLNRGLHGGSRMNSNRNARRGEDFEFGGFRGAIMLTVTDAERAATVRAHSRKYSCAVLCPRHLT-----SEPLSGGPRG*LAVSLHSDRTSRVANPH 1137
RDLNRGLHGGSR N NR +R+G DF G RG I+L VTD ER+AT+RA SR + AV+ PR+L+ ++P G + + + V NP+
Sbjct: 88 RDLNRGLHGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPY 185
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 3.030e-5 Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 3
Query: 423 GNSGRSRFERRGGLKKMKGYVTLADNPIIDRLMEILEF*NDWQENLQESPPPHGRG 590
GN GRS+ +R+ G KKM G + ++ +DRL+EILEF +DWQ L+ P G G
Sbjct: 65 GNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEG 120 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig209.50.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig209.50.5 >prot_P-littoralis_Contig209.50.5 ID=prot_P-littoralis_Contig209.50.5|Name=mRNA_P-littoralis_Contig209.50.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=182bp MIGRKTYRNPHPPTAGGDLRWKCHFITRESWSDLGACILEFVSIYRYLFEback to top mRNA from alignment at P-littoralis_Contig209:294808..296355+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig209.50.5 ID=mRNA_P-littoralis_Contig209.50.5|Name=mRNA_P-littoralis_Contig209.50.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=1548bp|location=Sequence derived from alignment at P-littoralis_Contig209:294808..296355+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig209:294808..296355+ >mRNA_P-littoralis_Contig209.50.5 ID=mRNA_P-littoralis_Contig209.50.5|Name=mRNA_P-littoralis_Contig209.50.5|organism=Pylaiella littoralis U1_48|type=CDS|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig209:294808..296355+ (Pylaiella littoralis U1_48)back to top |