mRNA_P-littoralis_Contig209.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig209.26.1
Unique NamemRNA_P-littoralis_Contig209.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig209.26.1 vs. uniprot
Match: A0A6H5K1U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1U5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 4.210e-5
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  199 RGIYRRGTSSFRNQISKFVRKESSNTVPGVSASSFPTDPPPMAAAT 336
            RG+YRRGTSSFRNQ SK VRKES  +VP  +AS  PT+PP   AAT
Sbjct:  795 RGMYRRGTSSFRNQFSKLVRKESILSVPPSAAS--PTEPPMTGAAT 838
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig209.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1U5_9PHAE4.210e-567.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig209contigP-littoralis_Contig209:140086..141150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3H0
PFAMsDEP,PAS_9,RGS
Model size426
Max annot lvl2759|Eukaryota
KEGG koko:K02157,ko:K19838,ko:K21440
KEGG Pathwayko04011,ko04310,ko04390,ko04550,ko04934,ko05165,ko05200,ko05210,ko05213,ko05217,ko05224,ko05225,ko05226,map04011,map04310,map04390,map04550,map04934,map05165,map05200,map05210,map05213,map05217,map05224,map05225,map05226
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.36e-05
EggNOG OGsKOG3589@1|root,KOG3589@2759|Eukaryota
Descriptionpositive regulation of GTPase activity
Cds size423
COG categoryS
BRITEko00000,ko00001,ko01009,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790012.9666631-CDS-P-littoralis_Contig209:140087..1402951680790012.9666631-CDS-P-littoralis_Contig209:140087..140295Pylaiella littoralis U1_48CDSP-littoralis_Contig209 140088..140295 -
1680790012.9821732-CDS-P-littoralis_Contig209:140935..1411501680790012.9821732-CDS-P-littoralis_Contig209:140935..141150Pylaiella littoralis U1_48CDSP-littoralis_Contig209 140936..141150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig209.26.1prot_P-littoralis_Contig209.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig209 140088..141150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig209.26.1

>prot_P-littoralis_Contig209.26.1 ID=prot_P-littoralis_Contig209.26.1|Name=mRNA_P-littoralis_Contig209.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
PNGSAGSSSNWAGGRHPAFESAAAGNSVGISGNSTDVDGGSGGGGSGVGN
GVGTDVGNGGGRGGGVRGIYRRGTSSFRNQISKFVRKESSNTVPGVSASS
FPTDPPPMAAATPPAASAVKPLRDVTSATFEVAAATAAAAA
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mRNA from alignment at P-littoralis_Contig209:140086..141150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig209.26.1 ID=mRNA_P-littoralis_Contig209.26.1|Name=mRNA_P-littoralis_Contig209.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1065bp|location=Sequence derived from alignment at P-littoralis_Contig209:140086..141150- (Pylaiella littoralis U1_48)
CCCAATGGCAGCGCAGGGAGCAGCTCGAATTGGGCGGGCGGGAGACACCC
CGCCTTTGAGTCAGCCGCGGCGGGGAACAGCGTCGGCATCAGTGGTAACA
GCACTGACGTTGACGGCGGCAGCGGAGGCGGTGGCAGTGGAGTTGGCAAT
GGAGTTGGTACTGACGTCGGCAACGGCGGCGGCCGCGGCGGCGGCGTCAG
GGGCATTTATCGTAGGTAAGGACCGTACGGACCGTACTATCTTGATGTGG
ACGTACTGCATGTTTTATTGAATGCCGTTAGTGCGCCGGCGAGTAAACGC
GGGTATCGTTTCACTTGTGCAGTACAGCAGTGCTTGAAACTTGTCGCCAC
ACGGCCTTTCTTCGTGTCCTTTATTTCATCCTACCCTACCCTACCCTACC
CTACCCTACCCTGTTCAAATCTATCTCATCCTATCCTATCGCAGGGGCCT
GTCTCGCCCCAACCCGACCGGCGTCACAACGTAAATAGGCTTTCTGTCTT
GCCACTCGTCAACGTTTTTTAACTCTTGAAGTGAAAAAAGCGAGGTGATT
GATAAACTTCGATAGTCGCCCCCTCGACCTGCCGCCGGCGCCGAAACTAG
CAGCGACGTTTTTTCCAAGGCTTTACCGCTGATGCCGCTGACTGAGCGCC
TCCGATGCCCCCCCCCCGCACCTTTGGAAGTAGACGAGTTGCTGCTGTCG
CCGTTCGTGAAGTTGGAGCTCACGGGCCCTCTGACTCTCTGCGATAGATA
CTTGTTTTACCTCCCGTTCTGATGCCAAGTACATTCGACGCATTTTCACA
TGCTTACTGCGGTGTTCGTCCCGTCTGCTTGTTTTTCTTCGCCTTTCTTG
TTCAGGGGTACTTCGTCGTTCCGAAACCAGATCTCTAAATTCGTCCGCAA
GGAAAGTTCCAACACCGTGCCCGGCGTGTCTGCCTCGAGCTTCCCCACGG
ATCCCCCCCCGATGGCAGCGGCAACTCCTCCGGCGGCGTCCGCCGTGAAG
CCTCTCAGGGATGTCACGTCTGCTACGTTCGAAGTTGCCGCCGCCACCGC
CGCTGCTGCTGCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig209:140086..141150-

>mRNA_P-littoralis_Contig209.26.1 ID=mRNA_P-littoralis_Contig209.26.1|Name=mRNA_P-littoralis_Contig209.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig209:140086..141150- (Pylaiella littoralis U1_48)
CCCAATGGCAGCGCAGGGAGCAGCTCGAATTGGGCGGGCGGGAGACACCC
CGCCTTTGAGTCAGCCGCGGCGGGGAACAGCGTCGGCATCAGTGGTAACA
GCACTGACGTTGACGGCGGCAGCGGAGGCGGTGGCAGTGGAGTTGGCAAT
GGAGTTGGTACTGACGTCGGCAACGGCGGCGGCCGCGGCGGCGGCGTCAG
GGGCATTTATCGTAGGGGTACTTCGTCGTTCCGAAACCAGATCTCTAAAT
TCGTCCGCAAGGAAAGTTCCAACACCGTGCCCGGCGTGTCTGCCTCGAGC
TTCCCCACGGATCCCCCCCCGATGGCAGCGGCAACTCCTCCGGCGGCGTC
CGCCGTGAAGCCTCTCAGGGATGTCACGTCTGCTACGTTCGAAGTTGCCG
CCGCCACCGCCGCTGCTGCTGCT
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