mRNA_P-littoralis_Contig208.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig208.28.1
Unique NamemRNA_P-littoralis_Contig208.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig208.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig208contigP-littoralis_Contig208:139546..140388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size845
Hectar predicted targeting categoryother localisation
Exons1
Cds size489
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790010.5671182-UTR-P-littoralis_Contig208:139545..1398991680790010.5671182-UTR-P-littoralis_Contig208:139545..139899Pylaiella littoralis U1_48UTRP-littoralis_Contig208 139546..139899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790010.5767214-CDS-P-littoralis_Contig208:139899..1403881680790010.5767214-CDS-P-littoralis_Contig208:139899..140388Pylaiella littoralis U1_48CDSP-littoralis_Contig208 139900..140388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig208.28.1prot_P-littoralis_Contig208.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig208 139900..140388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig208.28.1

>prot_P-littoralis_Contig208.28.1 ID=prot_P-littoralis_Contig208.28.1|Name=mRNA_P-littoralis_Contig208.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=163bp
MSVAPILDVVGSSSSSSMQKNEQSIPTTSLLAGGQPAATLTPTTTVVCSK
AERGAVARTAAAAAAALLREETNSLSSHGDGASSPSPGSLEEQDFRHQQH
QQQQQQQQQQHRFSAGGAAGQHDDHDQHDFADDGGGDDDDALGGMTFQDI
KEMTALRMVTQQH
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mRNA from alignment at P-littoralis_Contig208:139546..140388+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig208.28.1 ID=mRNA_P-littoralis_Contig208.28.1|Name=mRNA_P-littoralis_Contig208.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=843bp|location=Sequence derived from alignment at P-littoralis_Contig208:139546..140388+ (Pylaiella littoralis U1_48)
AAATTATCGGACTGCTGCAGCATCAGACCCAATCCTACCCAGCCATAACC
CTAACCAGCTCTGTTTACACCGGAGAGGAAGGGGGCAGGGAGAGAAAGCG
CACGCTTGGTTGTCTGTGTGAGAGAGAGCACTCGGATTGCTCGAACAATT
ACGAAAGCGACCACCGTCTACTTGGGGGTAAGCGGCAAGCAAAGAGCGGT
GAAGAGTGTGGAGCAAGCTGTGACAGCTTGCTGTGATACTCACGAGTTCT
GCTCAGCGCTCAGCTACGCTGGCTTTCTTGCGGCCAGCGTAGCGGGTGTG
TTTGTGTGTGTGTGTTTGTGCGCACGAAGAGAGCCTGTCCTTGCGTGCAC
ACACATGTCGGTAGCGCCCATACTAGACGTGGTGGGCAGCAGCAGCAGCA
GCAGTATGCAGAAGAACGAGCAGTCGATACCAACGACGTCGTTGCTCGCA
GGAGGTCAGCCTGCTGCCACCCTCACACCAACAACAACAGTCGTGTGTTC
CAAAGCAGAGAGGGGAGCCGTTGCACGAACAGCAGCAGCAGCAGCAGCCG
CACTGCTTCGTGAGGAAACCAACAGCCTTAGCTCCCACGGCGACGGTGCA
TCCTCTCCCAGCCCTGGGTCGTTGGAAGAGCAGGATTTTCGGCACCAGCA
GCACCAACAACAACAACAACAGCAGCAGCAGCAGCACCGTTTTTCAGCAG
GAGGAGCAGCGGGGCAACACGACGATCACGATCAACATGATTTCGCCGAT
GATGGTGGTGGTGATGATGATGATGCCTTGGGCGGGATGACTTTTCAAGA
TATCAAGGAGATGACGGCTCTTAGGATGGTCACCCAGCAGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig208:139546..140388+

>mRNA_P-littoralis_Contig208.28.1 ID=mRNA_P-littoralis_Contig208.28.1|Name=mRNA_P-littoralis_Contig208.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=489bp|location=Sequence derived from alignment at P-littoralis_Contig208:139546..140388+ (Pylaiella littoralis U1_48)
ATGTCGGTAGCGCCCATACTAGACGTGGTGGGCAGCAGCAGCAGCAGCAG
TATGCAGAAGAACGAGCAGTCGATACCAACGACGTCGTTGCTCGCAGGAG
GTCAGCCTGCTGCCACCCTCACACCAACAACAACAGTCGTGTGTTCCAAA
GCAGAGAGGGGAGCCGTTGCACGAACAGCAGCAGCAGCAGCAGCCGCACT
GCTTCGTGAGGAAACCAACAGCCTTAGCTCCCACGGCGACGGTGCATCCT
CTCCCAGCCCTGGGTCGTTGGAAGAGCAGGATTTTCGGCACCAGCAGCAC
CAACAACAACAACAACAGCAGCAGCAGCAGCACCGTTTTTCAGCAGGAGG
AGCAGCGGGGCAACACGACGATCACGATCAACATGATTTCGCCGATGATG
GTGGTGGTGATGATGATGATGCCTTGGGCGGGATGACTTTTCAAGATATC
AAGGAGATGACGGCTCTTAGGATGGTCACCCAGCAGCAC
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