mRNA_P-littoralis_Contig208.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig208.46.1
Unique NamemRNA_P-littoralis_Contig208.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig208.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig208contigP-littoralis_Contig208:260716..261024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog337075.U4LU19
PFAMsAAA_11,AAA_12
Model size297
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000375
EggNOG OGsCOG1112@1|root,KOG1807@2759|Eukaryota,38E0G@33154|Opisthokonta,3NXD2@4751|Fungi,3QJRX@4890|Ascomycota
Descriptionnf-x1 finger and helicase domain protein
Cds size297
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790010.3860562-CDS-P-littoralis_Contig208:260715..2607981680790010.3860562-CDS-P-littoralis_Contig208:260715..260798Pylaiella littoralis U1_48CDSP-littoralis_Contig208 260716..260798 +
1680790010.398392-CDS-P-littoralis_Contig208:260810..2610241680790010.398392-CDS-P-littoralis_Contig208:260810..261024Pylaiella littoralis U1_48CDSP-littoralis_Contig208 260811..261024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig208.46.1prot_P-littoralis_Contig208.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig208 260716..261024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig208.46.1

>prot_P-littoralis_Contig208.46.1 ID=prot_P-littoralis_Contig208.46.1|Name=mRNA_P-littoralis_Contig208.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
QAGGLINSTVQAPRPAARGFHGGAAGPRGGARRGTCRQFDRTGDCRFGSR
CVFTHVHNVSRGSPKRKAAGDGGAGTSGGSHKESKGAAPAPVVKKTKDA
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mRNA from alignment at P-littoralis_Contig208:260716..261024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig208.46.1 ID=mRNA_P-littoralis_Contig208.46.1|Name=mRNA_P-littoralis_Contig208.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig208:260716..261024+ (Pylaiella littoralis U1_48)
CAGGCGGGCGGGCTAATCAACTCCACCGTCCAGGCCCCGAGACCAGCGGC
CCGCGGCTTCCACGGGGGAGCCGCGGGGCCACGGGGGGGGGCCACGGGGG
GGGCACGTAGGGGAACATGCCGCCAGTTCGACCGCACCGGCGACTGCCGC
TTCGGTTCCCGGTGCGTGTTCACTCATGTGCATAACGTGAGCAGGGGCTC
GCCCAAGCGGAAGGCCGCGGGCGACGGCGGGGCTGGCACTTCCGGTGGCA
GCCACAAGGAGAGCAAGGGGGCGGCTCCTGCACCCGTCGTCAAGAAGACG
AAGGATGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig208:260716..261024+

>mRNA_P-littoralis_Contig208.46.1 ID=mRNA_P-littoralis_Contig208.46.1|Name=mRNA_P-littoralis_Contig208.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig208:260716..261024+ (Pylaiella littoralis U1_48)
CAGGCGGGCGGGCTAATCAACTCCACCGTCCAGGCCCCGAGACCAGCGGC
CCGCGGCTTCCACGGGGGAGCCGCGGGGCCACGGGGGGGGGCACGTAGGG
GAACATGCCGCCAGTTCGACCGCACCGGCGACTGCCGCTTCGGTTCCCGG
TGCGTGTTCACTCATGTGCATAACGTGAGCAGGGGCTCGCCCAAGCGGAA
GGCCGCGGGCGACGGCGGGGCTGGCACTTCCGGTGGCAGCCACAAGGAGA
GCAAGGGGGCGGCTCCTGCACCCGTCGTCAAGAAGACGAAGGATGCC
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