mRNA_P-littoralis_Contig208.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig208.31.1
Unique NamemRNA_P-littoralis_Contig208.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig208.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig208contigP-littoralis_Contig208:156173..158751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size869
Hectar predicted targeting categoryother localisation
Exons3
Cds size867
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790010.3236928-CDS-P-littoralis_Contig208:156172..1567001680790010.3236928-CDS-P-littoralis_Contig208:156172..156700Pylaiella littoralis U1_48CDSP-littoralis_Contig208 156173..156700 +
1680790010.3368425-CDS-P-littoralis_Contig208:157585..1576961680790010.3368425-CDS-P-littoralis_Contig208:157585..157696Pylaiella littoralis U1_48CDSP-littoralis_Contig208 157586..157696 +
1680790010.3505769-CDS-P-littoralis_Contig208:158521..1587491680790010.3505769-CDS-P-littoralis_Contig208:158521..158749Pylaiella littoralis U1_48CDSP-littoralis_Contig208 158522..158749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig208.31.1prot_P-littoralis_Contig208.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig208 156173..158749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig208.31.1

>prot_P-littoralis_Contig208.31.1 ID=prot_P-littoralis_Contig208.31.1|Name=mRNA_P-littoralis_Contig208.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=289bp
REYYDNAQQHHHHHLQQQQQQQQQQRHYHQGSNEFSRVGEQQHHHYHHHY
NNKSSSSGNSHSDHPPHRYSGGGSGGSGSGLSLLPHGPPLVSSRQSDGGV
VMSSAAGYHWQVGGGGSGGGGRGGWRREEARNFGGRGEGAYGGGGGGGGG
SVGITGAVGVRHGTSSPLADGDISFNVAEAVLVTPRAAADGQWAGSAPAT
AAAAAAAWKQHHLQAHGAPPGRNNDQHGSAAAAAPRAYNRVSNIGSGGGR
GERFGAIRHPEDHGVPIISNHHQKSSGSSSSNNPIGSYL
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mRNA from alignment at P-littoralis_Contig208:156173..158751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig208.31.1 ID=mRNA_P-littoralis_Contig208.31.1|Name=mRNA_P-littoralis_Contig208.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2579bp|location=Sequence derived from alignment at P-littoralis_Contig208:156173..158751+ (Pylaiella littoralis U1_48)
CGCGAGTACTACGACAACGCTCAGCAGCACCACCACCACCACCTGCAGCA
ACAGCAACAGCAGCAGCAGCAGCAACGGCATTACCATCAGGGGTCGAACG
AGTTTTCCCGGGTGGGCGAGCAGCAACACCACCACTACCACCACCACTAC
AACAACAAAAGCAGCAGCAGCGGTAACAGCCACTCCGACCACCCCCCCCA
CCGCTACAGCGGCGGCGGCAGCGGTGGCAGCGGCAGTGGCCTTTCGCTGC
TTCCCCACGGGCCGCCCCTCGTATCGTCGCGTCAGAGCGACGGGGGAGTG
GTCATGTCGTCCGCCGCGGGGTACCACTGGCAAGTCGGCGGCGGCGGTAG
CGGTGGCGGTGGCCGTGGGGGATGGAGGAGAGAGGAGGCAAGAAATTTCG
GCGGTAGAGGTGAGGGGGCGTACGGTGGCGGCGGCGGCGGCGGTGGTGGC
AGCGTGGGGATCACGGGGGCTGTTGGCGTGAGGCACGGAACCTCGTCTCC
TCTTGCGGACGGTGATATCTCTTTCAACGTGAGTGTTGATTTATTGGTGT
TGCTTGTGGTGTTTTTCTCCGTGTGCCCGTGCCCGTGCGTGTCGGTGGTG
CGTGTTTATTGTGCTTGTTTGTTGTGCTTGTTGTACTTGTATGTTGTGTC
CGTTGTGCTTGTTGTGGTCCAGTTCAGTACCGGTACTTCTTTGAGTAAGA
AGGAAAACAGCACGCTGCCCACAGCACAGAGCTGCCGGTATGTTGGCTAT
GGATGCTGCGCGTAGGTATTGACCTTTTTATGATATGAGGGCCGGAAGGT
CGCCCTTCTCCATTTTCGCCTACAACATTGCTAATTAAGAAGGTTTTTAC
CGGGGAGACGCGGTTTGCGGGCGGCGACCCCCCCCCCCACCCCCCCTCAT
CCTTGTCACACGATGGTGTTGTCCCTGGGCGGCTCCTTGACCACGCGAGT
TTCAACCCCCCTCTCGCCGTGGCCCACCTTCCGCAGATGACGGTATATTC
CTGAAAATACATGCGGGCGGGACCTCAGGCGTTTATGGATCGTTCTGACT
CATGTTCTCGCCTCGATGCAGTTTTACTTGGTTGAGCATATGGCGGCACA
TGGCGCGTTGGCAGAGTCTGTTGTTTTTCCCTTTTAGCATCCGTTAAGAT
TGTTCTTGTTCTTGTCCTTGTCCTGTTGCTTTTTATTCTCGCATGAGCTC
ACCGCTATCGTCTCTCGCCTGTGGCCGGGCCTTTCTTGATGAATACTTCG
AAGTACTTCTATACTGGTATACACTCGGAGAAGCTTTCATCGTGCGGCGG
TTCGGCCTTGCTTGTCTGAACCTTCCTTTTGGCGATCAACAACGTGTTGT
TTCGTTTCGTCGCAAACTTGGTTGGCACCGCGGCGCCTCTACAACACCGA
CACATCGGTACAGGTGGCGGAGGCCGTCCTGGTGACACCGCGGGCCGCAG
CCGACGGCCAGTGGGCCGGAAGCGCGCCGGCAACAGCAGCGGCAGCAGCG
GCAGCATGGAAACAACACCATCTGGTTCGTATTTTGTTCTTGTGCGATAA
TTCAGAAGTTTCTTCGTATGTGTACCTCATAAAGTGTTGAGATACCATTT
TTTTTTTGCAAAGAGTCTTTCGAACAGCAACAACAGCAGCAGCAGCAGCG
GCAGCGGCGGCTTCCTGGAAACAGCACCATCTGGTTCGTATTTTGTTCTC
AGGCTACTAAAAACTGTATGTCTAACGTGATGAAAATTCCAACACTTCTT
GAGAGTCTCGCCAGCAGCAACGGCAGCGCCAGCAGCCGGGCCATGAAAGC
AGCATCACCTGGCTCGTTATGTACCTATTTTCAGTTTGTACCAAGGTGTG
TGTGTGTGTTTTTTTTTCACGTTGAAAGCGGTCTGGATTGCCGCTTAGTT
TTTGCGCTGGCGCCTGCCCGTCGCTCTGTCAACAAATGTTGTCTTTATTG
GAAGGGTGCTTTTAGTTATTTTACTTGGGGTACGGGAAATAGTGTCACAC
GCGTCGGCTAAATACGCACATCATGCATATGATGTGATATACTTCGTACC
CTTTATTAAACGGAGTATTTGTGTCTGGTTTGTGGCTCATGGGCTAGATA
GACTACAGGTGTCTTAGGGGCCGAAGTCATGGTTGGTGCTGTCTCCTTTT
TGTGCACAACAGGGCTGTTTGGGGGGTTGATGAGGGGAGGGGATTGTCTG
GTCCAAATTGGAAGGGCGTCACAAACTCAACCATAAACCCCTGGGCTGGA
CCGCAAGAAACAGCCCGGGTATGATATCAACTAACGCGACGCGACCCCCC
CCCCCCACACACACACACACACACACATTTTCGTGCTTTCGCGAAGCAGC
AAGCACACGGTGCCCCCCCTGGCCGCAACAACGACCAGCACGGCAGTGCC
GCTGCCGCTGCCCCTCGCGCCTACAACCGCGTCAGCAACATCGGCAGCGG
TGGCGGCCGGGGCGAGAGGTTCGGCGCTATTCGCCATCCGGAGGACCACG
GTGTTCCCATCATATCGAACCATCACCAGAAGAGCAGCGGCAGTAGCAGC
AGCAACAATCCGATCGGTTCGTACCTCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig208:156173..158751+

>mRNA_P-littoralis_Contig208.31.1 ID=mRNA_P-littoralis_Contig208.31.1|Name=mRNA_P-littoralis_Contig208.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=867bp|location=Sequence derived from alignment at P-littoralis_Contig208:156173..158751+ (Pylaiella littoralis U1_48)
CGCGAGTACTACGACAACGCTCAGCAGCACCACCACCACCACCTGCAGCA
ACAGCAACAGCAGCAGCAGCAGCAACGGCATTACCATCAGGGGTCGAACG
AGTTTTCCCGGGTGGGCGAGCAGCAACACCACCACTACCACCACCACTAC
AACAACAAAAGCAGCAGCAGCGGTAACAGCCACTCCGACCACCCCCCCCA
CCGCTACAGCGGCGGCGGCAGCGGTGGCAGCGGCAGTGGCCTTTCGCTGC
TTCCCCACGGGCCGCCCCTCGTATCGTCGCGTCAGAGCGACGGGGGAGTG
GTCATGTCGTCCGCCGCGGGGTACCACTGGCAAGTCGGCGGCGGCGGTAG
CGGTGGCGGTGGCCGTGGGGGATGGAGGAGAGAGGAGGCAAGAAATTTCG
GCGGTAGAGGTGAGGGGGCGTACGGTGGCGGCGGCGGCGGCGGTGGTGGC
AGCGTGGGGATCACGGGGGCTGTTGGCGTGAGGCACGGAACCTCGTCTCC
TCTTGCGGACGGTGATATCTCTTTCAACGTGGCGGAGGCCGTCCTGGTGA
CACCGCGGGCCGCAGCCGACGGCCAGTGGGCCGGAAGCGCGCCGGCAACA
GCAGCGGCAGCAGCGGCAGCATGGAAACAACACCATCTGCAAGCACACGG
TGCCCCCCCTGGCCGCAACAACGACCAGCACGGCAGTGCCGCTGCCGCTG
CCCCTCGCGCCTACAACCGCGTCAGCAACATCGGCAGCGGTGGCGGCCGG
GGCGAGAGGTTCGGCGCTATTCGCCATCCGGAGGACCACGGTGTTCCCAT
CATATCGAACCATCACCAGAAGAGCAGCGGCAGTAGCAGCAGCAACAATC
CGATCGGTTCGTACCTC
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