mRNA_P-littoralis_Contig208.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig208.29.1
Unique NamemRNA_P-littoralis_Contig208.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig208.29.1 vs. uniprot
Match: D7G531_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G531_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.880e-18
Identity = 68/128 (53.12%), Postives = 78/128 (60.94%), Query Frame = 2 
Query:    2 KGSPVKSAMPEGLTVQELKNLTKMRLAREAVTIPA--------GHLSENQSLVGGSGGGSAFRGRRDAASPPPQAQGGDSAGMVGLRQRYLDSRSPVPRSTPPASGSGILDDNRPHRRTRRGGRRGRN 361
            +G+   SAMP GLTVQELK LTK+RLAREA+T PA        G   E  +     GGG   RGR  A SP   A+ GD   +   R  + DSRSPVPRS+P  S  G+ D  RPHRRTRRGGRRGRN
Sbjct:  118 RGAQFASAMPHGLTVQELKELTKIRLAREALTAPAQPASSALPGAQQERNNPCSDGGGGDFGRGR--AVSP---ARSGD---LGRRRGGHADSRSPVPRSSP--STPGVED--RPHRRTRRGGRRGRN 233
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BLAST of mRNA_P-littoralis_Contig208.29.1 vs. uniprot
Match: A0A6H5KAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAZ7_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.290e-15
Identity = 68/126 (53.97%), Postives = 75/126 (59.52%), Query Frame = 2 
Query:    2 KGSPVKSAMPEGLTVQELKNLTK-MRLAREAVTIPAGHLSE-----NQSLVGGSGGGSAFRGRRDAASPPPQAQGGDSAGMVGLRQRYLDSRSPVPRSTPPASGSGILDDNRPHRRTRRGGRRGRN 361
            +G+   SAMP GLTVQELK LTK MRLAREA+T PA   S       Q    GS GG    GR  A SP   A  GD   +   R  + DSRSPVPRS+P  S  G+ D  RPHRRTRRGGRRG N
Sbjct:  113 RGAQFASAMPHGLTVQELKELTKVMRLAREALTAPAPPASSALPGTQQRNNPGSDGGLGDFGRGRAISP---ALSGD---LGRPRGGHADSRSPVPRSSP--STPGVED--RPHRRTRRGGRRGPN 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig208.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G531_ECTSI1.880e-1853.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAZ7_9PHAE1.290e-1553.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig208contigP-littoralis_Contig208:151141..152293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size364
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790010.2306983-CDS-P-littoralis_Contig208:151140..1512101680790010.2306983-CDS-P-littoralis_Contig208:151140..151210Pylaiella littoralis U1_48CDSP-littoralis_Contig208 151141..151210 +
1680790010.2420757-CDS-P-littoralis_Contig208:152000..1522931680790010.2420757-CDS-P-littoralis_Contig208:152000..152293Pylaiella littoralis U1_48CDSP-littoralis_Contig208 152001..152293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig208.29.1prot_P-littoralis_Contig208.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig208 151141..152293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig208.29.1

>prot_P-littoralis_Contig208.29.1 ID=prot_P-littoralis_Contig208.29.1|Name=mRNA_P-littoralis_Contig208.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
EGVAGEVGDAGRADRAGAQKFDQDAPRERGRHHPRRPSVGKSKPCWRQRR
RQCVPREERCRLPAAAGTRRRLGGDGRAAPAVPGQPEPRASVDAPRLGFG
HPRRQQAAPPDSTRGPAGAQQ
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mRNA from alignment at P-littoralis_Contig208:151141..152293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig208.29.1 ID=mRNA_P-littoralis_Contig208.29.1|Name=mRNA_P-littoralis_Contig208.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1153bp|location=Sequence derived from alignment at P-littoralis_Contig208:151141..152293+ (Pylaiella littoralis U1_48)
GAAGGGGTCGCCGGTGAAGTCGGCGATGCCGGAAGGGCTGACCGTGCAGG
AGCTCAAAAATTTGACCAAGGTGTGTGTGTTTGTGTGCTTAATCGAATCG
TGAACGCAGAGCAAGCGACACCCATGTACTGCTGCACCTGGAGCCGGGTA
AATGTTTCGCGATGATGTTTTTTTTTTTTAAGAACGCCAGCAGAGGAGAT
CTGCGAGCCCAATCTGGGTTGTTCGCAGAAAAGTGCTCGGGGGGGAGTCA
GTCAGTCCGGCACCCCTCAAGCCAAAAAAAGACAACATGAATGAAGATTG
ACTTTTGCCACGAAACGTTGCCAAAACTGGCGGCGCTTGTCTAGTCACGG
TCTTCCTTTGGAAATGCCAAAAAAAAGGCTCACGTTGCTGTCATGTGAGT
CCCGTATATACACATATCAAACAATACAGTAGTATCAGCCTGCACGACGT
TGCCGACCCTGTATATTCACACATACTTTTTTTTTTTTGCGTCGTCGTCG
TCGTTGTCGAGGTCATCCGGAGAACGACTGGGCGTGCGTACTCGTACGTG
TGTATGTGTTTGCGTGTGTTTACGTGTGCAGGTCTGCGTGCGTGATTGTG
CACGTTTTGTGCCATGCCGATGTTTAAATTGCACACCGACCACCCCGGCT
CGCTCGTCGAGTCAAAACCCCCCTCGAACGCCGGTAGGTACTACTCCGTA
TACACTTCGTACTTCGAGGTATATAACTGCTGCATGCATGTCCCACGCCC
GGCGACGCCCCGACCGGACTTCCTCAACCCTGGAAAATATACATTGCAAT
GAAAAACGGACTGCTGCTGCTGCTGCTACTGTCGTGGTGGTGGTTGGTAA
ATTACAACAGATGCGCCTCGCGAGAGAGGCCGTCACCATCCCCGCCGGCC
ATCTGTCGGAAAATCAAAGCCTTGTTGGCGGCAGCGGCGGCGGCAGTGCG
TTCCGAGGGAGGAGAGATGCCGCCTCCCCGCCGCCGCAGGCACAAGGCGG
CGACTCGGCGGGGATGGTCGGGCTGCGCCAGCGGTACCTGGACAGCCGGA
GCCCCGTGCCTCGGTCGACGCCCCCCGCCTCGGGTTCGGGCATCCTCGAC
GACAACAGGCCGCACCGCCGGACTCGACGCGGGGGCCGGCGGGGGCGCAA
CAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig208:151141..152293+

>mRNA_P-littoralis_Contig208.29.1 ID=mRNA_P-littoralis_Contig208.29.1|Name=mRNA_P-littoralis_Contig208.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig208:151141..152293+ (Pylaiella littoralis U1_48)
GAAGGGGTCGCCGGTGAAGTCGGCGATGCCGGAAGGGCTGACCGTGCAGG
AGCTCAAAAATTTGACCAAGATGCGCCTCGCGAGAGAGGCCGTCACCATC
CCCGCCGGCCATCTGTCGGAAAATCAAAGCCTTGTTGGCGGCAGCGGCGG
CGGCAGTGCGTTCCGAGGGAGGAGAGATGCCGCCTCCCCGCCGCCGCAGG
CACAAGGCGGCGACTCGGCGGGGATGGTCGGGCTGCGCCAGCGGTACCTG
GACAGCCGGAGCCCCGTGCCTCGGTCGACGCCCCCCGCCTCGGGTTCGGG
CATCCTCGACGACAACAGGCCGCACCGCCGGACTCGACGCGGGGGCCGGC
GGGGGCGCAACAG
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