mRNA_P-littoralis_Contig208.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig208.24.1
Unique NamemRNA_P-littoralis_Contig208.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig208.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig208contigP-littoralis_Contig208:121064..123143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1764
Hectar predicted targeting categoryother localisation
Exons2
Cds size1437
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790010.1663814-UTR-P-littoralis_Contig208:121063..1213241680790010.1663814-UTR-P-littoralis_Contig208:121063..121324Pylaiella littoralis U1_48UTRP-littoralis_Contig208 121064..121324 -
1680790010.1979632-UTR-P-littoralis_Contig208:123077..1231431680790010.1979632-UTR-P-littoralis_Contig208:123077..123143Pylaiella littoralis U1_48UTRP-littoralis_Contig208 123078..123143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790010.1780114-CDS-P-littoralis_Contig208:121324..1219871680790010.1780114-CDS-P-littoralis_Contig208:121324..121987Pylaiella littoralis U1_48CDSP-littoralis_Contig208 121325..121987 -
1680790010.1872506-CDS-P-littoralis_Contig208:122303..1230771680790010.1872506-CDS-P-littoralis_Contig208:122303..123077Pylaiella littoralis U1_48CDSP-littoralis_Contig208 122304..123077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig208.24.1prot_P-littoralis_Contig208.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig208 121325..123077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig208.24.1

>prot_P-littoralis_Contig208.24.1 ID=prot_P-littoralis_Contig208.24.1|Name=mRNA_P-littoralis_Contig208.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=479bp
MARHDADVLLGRPPEARRPPGSSPAASFFSNGGVGSGVQQQRHHDNDQLS
HRQPNPPISGRNQVDAPLEEKNSHPGRHQEPPPATEEACVHSSPLRPPSP
SEETSSASPCFSSPKPTPTQPHPEKIYYPQQTNFQQLAEAAVCSLAVTRA
PTTNVVADALEQLDSGGGDAWEGRNQAGRDGRIHEEALFLHEPFRGNRGT
EARCGGSSYYKGASDNGCGGNGGGGGGVGVCGGVGCVRRLRERVTPKRLD
HHTTCSSASYAYQLQQEVDFWVSGARREGVWRESPSFSQVNDDSNSNSSS
RSILATTSVAVPVPAGGGAPTGGVEKLTPVVGHGAHRRRHHRLCCRRDAL
PLGSSGDSDSDDGDDDGDDAVDRLIRASSRNATDDDQRDIKKGNEMLLLD
KTAFFSPAGGLNRRRANSVTSGARRSNRDSPGASATTMTTVVETRTPGAP
SMGAATAAETAAVHSFEAGQGWFWGAPS*
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mRNA from alignment at P-littoralis_Contig208:121064..123143-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig208.24.1 ID=mRNA_P-littoralis_Contig208.24.1|Name=mRNA_P-littoralis_Contig208.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2080bp|location=Sequence derived from alignment at P-littoralis_Contig208:121064..123143- (Pylaiella littoralis U1_48)
TTTGGGCGTAGGGAGCTCACATGGGAGAGCCTTGACAGAGAGGAGAGTGG
CGGTGTTCTCGACAGAATGGCGAGGCACGATGCCGACGTTCTCCTCGGGA
GGCCGCCTGAAGCTCGTCGACCTCCTGGCTCCAGCCCGGCCGCTTCCTTC
TTCTCAAATGGGGGTGTGGGTAGTGGTGTGCAGCAGCAGCGCCATCACGA
CAATGACCAACTGTCACATCGCCAGCCCAACCCACCGATTTCGGGCAGGA
ACCAAGTGGATGCCCCACTTGAAGAAAAAAACAGCCACCCGGGCCGCCAC
CAAGAACCCCCGCCTGCGACAGAGGAGGCTTGCGTGCATAGCAGTCCCTT
GCGACCACCGTCACCGTCTGAGGAAACATCAAGCGCCTCTCCTTGCTTCT
CGTCCCCGAAACCGACACCGACCCAACCGCATCCGGAAAAAATATATTAT
CCACAGCAAACAAATTTTCAGCAGTTGGCGGAGGCGGCGGTGTGCAGCCT
GGCCGTCACGCGTGCACCGACGACGAATGTTGTTGCCGATGCATTGGAGC
AATTGGACTCTGGCGGCGGTGATGCGTGGGAGGGGCGAAATCAGGCTGGA
CGAGATGGCAGAATCCATGAGGAGGCTCTCTTTCTCCATGAACCTTTCCG
AGGAAACCGAGGCACCGAAGCCCGTTGTGGCGGAAGCAGTTATTACAAGG
GTGCTAGCGACAACGGCTGTGGCGGAAACGGTGGTGGCGGCGGGGGTGTC
GGGGTTTGTGGCGGTGTCGGATGCGTTCGGCGCCTTCGCGAGCGCGTGAC
CCCCAAAAGGCTCGATCATCACACGACCTGCTCGTCTGCAGTAAGTCAGT
CGTCCCGCTGACTGGTTGCGATGGGTAAATGCAATGGCTGGTGCACTACA
GTAGGGAGCTGTAGGATATTGTTGCGGGCAACCACATGTCGCCACCACCA
TCGTCGTGCTTTTGAAGCAGCGTCAGGTCCGTACGACGCATACACCTGAC
TTCATGTGGCACGTGTAGTGCAGACAGCGGGACACGCTTGTGTGTATCCT
GTACTCATCGTGCCCAACCACAACCCTTATTTATCCTGTACCGCCACAAC
AATCTGACACACGCGCTCCGCCCGTTTTCTTGCCGCTTTCTACCTTTACT
TCACAGTCGTATGCGTACCAGCTCCAACAAGAGGTGGACTTCTGGGTATC
CGGCGCCCGCAGGGAGGGAGTGTGGCGGGAATCTCCTTCTTTTTCTCAGG
TCAACGACGACAGTAACAGTAACAGTAGCAGTAGAAGTATATTGGCGACG
ACTAGTGTTGCCGTTCCCGTTCCAGCTGGAGGTGGCGCGCCAACCGGTGG
GGTTGAAAAGCTAACCCCGGTGGTGGGACACGGCGCGCATCGGCGTCGGC
ATCATCGTCTTTGCTGCAGGCGAGACGCTCTACCCTTAGGCAGCAGCGGC
GACAGCGACAGTGATGATGGTGATGATGATGGTGATGACGCGGTGGATAG
ACTGATCCGAGCCTCCAGTAGGAATGCCACCGACGATGATCAACGGGATA
TAAAAAAAGGTAACGAGATGTTATTATTGGACAAAACCGCATTTTTTTCA
CCTGCCGGGGGGCTCAACCGCCGCCGTGCGAATAGTGTAACAAGCGGAGC
ACGCCGTTCCAACCGGGACTCGCCCGGAGCAAGTGCAACTACAATGACGA
CAGTGGTAGAGACAAGAACACCAGGAGCACCATCAATGGGAGCAGCAACG
GCAGCAGAAACGGCAGCGGTGCATTCGTTTGAAGCTGGGCAGGGTTGGTT
TTGGGGGGCGCCATCGTGAAATATGAACTAGAAGCACTGTGCGACTGCTG
TGCGACAAAAAATATACTCCGAGTAATAGCAAACTTCGAATTGTGCGTCT
TCATGATTTTCCTCGTAGTCCATCTCTAATTTGTGTGTTTGGGCAGGGAG
CGTGTGTATGTTTTTTAGTCTGGATGTAGGGAATTTCTGCGTACAAGTAT
GGTCCATGCACATCAGTTTGTCCAATTGCGTTTCAGGCTATAACTTTTGA
AATACTGGGAATTAGACGGAAATCAAGCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig208:121064..123143-

>mRNA_P-littoralis_Contig208.24.1 ID=mRNA_P-littoralis_Contig208.24.1|Name=mRNA_P-littoralis_Contig208.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1437bp|location=Sequence derived from alignment at P-littoralis_Contig208:121064..123143- (Pylaiella littoralis U1_48)
ATGGCGAGGCACGATGCCGACGTTCTCCTCGGGAGGCCGCCTGAAGCTCG
TCGACCTCCTGGCTCCAGCCCGGCCGCTTCCTTCTTCTCAAATGGGGGTG
TGGGTAGTGGTGTGCAGCAGCAGCGCCATCACGACAATGACCAACTGTCA
CATCGCCAGCCCAACCCACCGATTTCGGGCAGGAACCAAGTGGATGCCCC
ACTTGAAGAAAAAAACAGCCACCCGGGCCGCCACCAAGAACCCCCGCCTG
CGACAGAGGAGGCTTGCGTGCATAGCAGTCCCTTGCGACCACCGTCACCG
TCTGAGGAAACATCAAGCGCCTCTCCTTGCTTCTCGTCCCCGAAACCGAC
ACCGACCCAACCGCATCCGGAAAAAATATATTATCCACAGCAAACAAATT
TTCAGCAGTTGGCGGAGGCGGCGGTGTGCAGCCTGGCCGTCACGCGTGCA
CCGACGACGAATGTTGTTGCCGATGCATTGGAGCAATTGGACTCTGGCGG
CGGTGATGCGTGGGAGGGGCGAAATCAGGCTGGACGAGATGGCAGAATCC
ATGAGGAGGCTCTCTTTCTCCATGAACCTTTCCGAGGAAACCGAGGCACC
GAAGCCCGTTGTGGCGGAAGCAGTTATTACAAGGGTGCTAGCGACAACGG
CTGTGGCGGAAACGGTGGTGGCGGCGGGGGTGTCGGGGTTTGTGGCGGTG
TCGGATGCGTTCGGCGCCTTCGCGAGCGCGTGACCCCCAAAAGGCTCGAT
CATCACACGACCTGCTCGTCTGCATCGTATGCGTACCAGCTCCAACAAGA
GGTGGACTTCTGGGTATCCGGCGCCCGCAGGGAGGGAGTGTGGCGGGAAT
CTCCTTCTTTTTCTCAGGTCAACGACGACAGTAACAGTAACAGTAGCAGT
AGAAGTATATTGGCGACGACTAGTGTTGCCGTTCCCGTTCCAGCTGGAGG
TGGCGCGCCAACCGGTGGGGTTGAAAAGCTAACCCCGGTGGTGGGACACG
GCGCGCATCGGCGTCGGCATCATCGTCTTTGCTGCAGGCGAGACGCTCTA
CCCTTAGGCAGCAGCGGCGACAGCGACAGTGATGATGGTGATGATGATGG
TGATGACGCGGTGGATAGACTGATCCGAGCCTCCAGTAGGAATGCCACCG
ACGATGATCAACGGGATATAAAAAAAGGTAACGAGATGTTATTATTGGAC
AAAACCGCATTTTTTTCACCTGCCGGGGGGCTCAACCGCCGCCGTGCGAA
TAGTGTAACAAGCGGAGCACGCCGTTCCAACCGGGACTCGCCCGGAGCAA
GTGCAACTACAATGACGACAGTGGTAGAGACAAGAACACCAGGAGCACCA
TCAATGGGAGCAGCAACGGCAGCAGAAACGGCAGCGGTGCATTCGTTTGA
AGCTGGGCAGGGTTGGTTTTGGGGGGCGCCATCGTGA
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