mRNA_P-littoralis_Contig208.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig208.1.1
Unique NamemRNA_P-littoralis_Contig208.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig208.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig208contigP-littoralis_Contig208:1792..2610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size381
Hectar predicted targeting categoryother localisation
Exons2
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790010.1162713-CDS-P-littoralis_Contig208:1791..18981680790010.1162713-CDS-P-littoralis_Contig208:1791..1898Pylaiella littoralis U1_48CDSP-littoralis_Contig208 1792..1898 +
1680790010.1328108-CDS-P-littoralis_Contig208:2336..26101680790010.1328108-CDS-P-littoralis_Contig208:2336..2610Pylaiella littoralis U1_48CDSP-littoralis_Contig208 2337..2610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig208.1.1prot_P-littoralis_Contig208.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig208 1792..2610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig208.1.1

>prot_P-littoralis_Contig208.1.1 ID=prot_P-littoralis_Contig208.1.1|Name=mRNA_P-littoralis_Contig208.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
REKHQAQLPSSYPPQTAAAGGAKTVEEGRLFVPQRRKLVSLTVQSPVCER
VLPKIRREVLFSGCSCPSAFHGTKQAHSNCHFRGNTLFGMIFSPGHSSTC
AHLPYKNGLKVVHIKIRTPLRTDNFV*
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mRNA from alignment at P-littoralis_Contig208:1792..2610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig208.1.1 ID=mRNA_P-littoralis_Contig208.1.1|Name=mRNA_P-littoralis_Contig208.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=819bp|location=Sequence derived from alignment at P-littoralis_Contig208:1792..2610+ (Pylaiella littoralis U1_48)
AGAGAAAAGCACCAGGCACAACTCCCTTCCAGTTACCCTCCGCAAACAGC
AGCAGCAGGAGGAGCTAAGACTGTGGAGGAAGGAAGACTTTTTGTCCCGC
AACGCAGGTAAGCACCGCGGCCTGGCATGTCGATGCTACGTTTTTTGTGA
GGATGGATGCGGTTGTCTGTCTCCTGGGGTGGTTCTTATTACCGCTACAG
TATTCCAGAATCGAAAATCGAAATCGAAAATCGGATATGTCTCTGGTTGG
CCGCCCGCGCCGCCTTTTCGATTTTCGTTTTTGTGTTCCCATATTTCTTG
GGCACCCTGAAATCGCAAACGAGGAACGAAAAGCCTCGAAAATGCGGCTC
AAAAACGAATAGACCATTGCTGCTGTAGACCACACAACGGAGAAAAAGGA
GATGTGTGCTTTGCACTCTGCGCTGCTGCCGCCTGTACGTTCTCTGGGAG
AGCGCGTCAGAGTGCGCATCAATGTGTCTTCGCTTGATTGGTCACAGCAC
AACATTAAAGCCTGCGCTTGCTTCATGTGATATCTCGCTCGGCAGGAAGC
TGGTTTCCCTCACGGTACAGAGCCCTGTGTGCGAGCGGGTTCTGCCGAAG
ATTCGGAGAGAAGTACTCTTCTCAGGATGTTCCTGCCCATCGGCTTTTCA
CGGAACTAAACAGGCTCATTCAAACTGCCATTTTCGTGGGAACACATTAT
TCGGCATGATTTTTTCGCCAGGTCACAGCTCAACTTGTGCGCACCTGCCG
TACAAGAACGGTTTAAAGGTCGTCCACATAAAAATTCGTACCCCCTTAAG
AACAGATAACTTTGTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig208:1792..2610+

>mRNA_P-littoralis_Contig208.1.1 ID=mRNA_P-littoralis_Contig208.1.1|Name=mRNA_P-littoralis_Contig208.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig208:1792..2610+ (Pylaiella littoralis U1_48)
AGAGAAAAGCACCAGGCACAACTCCCTTCCAGTTACCCTCCGCAAACAGC
AGCAGCAGGAGGAGCTAAGACTGTGGAGGAAGGAAGACTTTTTGTCCCGC
AACGCAGGAAGCTGGTTTCCCTCACGGTACAGAGCCCTGTGTGCGAGCGG
GTTCTGCCGAAGATTCGGAGAGAAGTACTCTTCTCAGGATGTTCCTGCCC
ATCGGCTTTTCACGGAACTAAACAGGCTCATTCAAACTGCCATTTTCGTG
GGAACACATTATTCGGCATGATTTTTTCGCCAGGTCACAGCTCAACTTGT
GCGCACCTGCCGTACAAGAACGGTTTAAAGGTCGTCCACATAAAAATTCG
TACCCCCTTAAGAACAGATAACTTTGTTTGA
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