mRNA_P-littoralis_Contig207.58.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig207.58.1
Unique NamemRNA_P-littoralis_Contig207.58.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig207.58.1 vs. uniprot
Match: D8LFI8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI8_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 1.230e-139
Identity = 245/461 (53.15%), Postives = 308/461 (66.81%), Query Frame = 1 
Query:  136 MTSRRVRSKTCHHPPSRRPGLRSSSSSRSRQVAPVNNNEEDMQPICGVELPHHIMLEVLSFLDTRAIVRGRRVSRAFRTDAPALIDMLDFKEGHEFPSATRMKVFSRVTEVRVDGDNSLVHAAAEGLRGCPSTLRRLTISREPSVAH-EAPLSEDATKDLCALPLRELETRRIALEFPSELRMPAWETLEKLVIRDATLDDVALVNLVASIPKGPLPMRHLDISRNPFGHEKAVQPLAAALWSFPYMEKLELTADRISSDGAKLVLRALLDGACPKIKSLDLSLNFLHDGVLEYLADGLGQAAHGLENLEKLGIGGRFSPDYGVTCFDAIARALAAGGLPKLNFLHLQGDVGPPQVGPLLRKFKLGACPNLAVVKVERSSRGYPAEDPESTEDAVSSMLELVTSSCAPLLREVHVLGMNLGEGLEWAEE--ERTAFYRARNESSFHRLALAGANRGVMIFV 1509
            M +R +R+K   H  S R GLRSS    +R+     NN+      C  +LPHH++LE++SFLDTR+IV GR +SRAF +DAPAL+  LDF  G + PSA  +K+F  V +V +DG+  LVHA   GLRG  S+LR L +S   SV   E PLS+ AT DLCALPL EL+   + +EFP  L M AW TL++LVIRDA L D +L +L  SIP+G LP+RHLD+SRN FG    V P A AL SFP +E LEL+A RI       ++R LL+GACPK+++LDLSLNF  +G+L  L +GLG   HGL NL KLG G R + D  +TCF+ + +ALAAGGLPKL+FLHLQGDVGP QV P+L + + GACP LA+VK+ERS      ED    EDA  SM  LV S   P LREVH LGM L EG+E A E    +AFYRARN+S++H LA+ G  RGV +FV
Sbjct:    1 METRGMRAKEKQHNKSGRAGLRSSPRRCAREA---RNNKPGG---CDADLPHHVVLEIVSFLDTRSIVSGRCLSRAFSSDAPALVKTLDFHMGQQSPSAETIKLFPEVRQVNLDGNRDLVHAVVAGLRGWGSSLR-LDVSLHDSVPQKEEPLSKTATTDLCALPLTELDMMEVVIEFPPLLPMNAWRTLQRLVIRDAFLGDESLESLSKSIPEGALPLRHLDLSRNLFGGYDTVLPFADALRSFPDLEWLELSACRICRGSGDRIVRTLLEGACPKLRTLDLSLNFFTNGLLASLCEGLGAPGHGLLNLRKLGFGSRVTGDEMITCFEKVGKALAAGGLPKLDFLHLQGDVGPRQVSPVLSRLRGGACPMLAMVKLERSLHSTLGEDEFGAEDAAQSMFNLVISGHIPHLREVHALGMALNEGMEKANEAGRDSAFYRARNQSTWHHLAVEGKARGVQVFV 454
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig207.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFI8_ECTSI1.230e-13953.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig207contigP-littoralis_Contig207:288316..291213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2898
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-04_002030.1
Cds size1491
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790008.8941553-UTR-P-littoralis_Contig207:288315..2883361680790008.8941553-UTR-P-littoralis_Contig207:288315..288336Pylaiella littoralis U1_48UTRP-littoralis_Contig207 288316..288336 +
1680790008.9298172-UTR-P-littoralis_Contig207:289827..2912131680790008.9298172-UTR-P-littoralis_Contig207:289827..291213Pylaiella littoralis U1_48UTRP-littoralis_Contig207 289828..291213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790008.9134796-CDS-P-littoralis_Contig207:288336..2898271680790008.9134796-CDS-P-littoralis_Contig207:288336..289827Pylaiella littoralis U1_48CDSP-littoralis_Contig207 288337..289827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig207.58.1prot_P-littoralis_Contig207.58.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig207 288337..289827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig207.58.1

>prot_P-littoralis_Contig207.58.1 ID=prot_P-littoralis_Contig207.58.1|Name=mRNA_P-littoralis_Contig207.58.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=497bp
MPNLLREIPQTPFVLRPPTQTPDSNTRDNTALLREEMAMTSRRVRSKTCH
HPPSRRPGLRSSSSSRSRQVAPVNNNEEDMQPICGVELPHHIMLEVLSFL
DTRAIVRGRRVSRAFRTDAPALIDMLDFKEGHEFPSATRMKVFSRVTEVR
VDGDNSLVHAAAEGLRGCPSTLRRLTISREPSVAHEAPLSEDATKDLCAL
PLRELETRRIALEFPSELRMPAWETLEKLVIRDATLDDVALVNLVASIPK
GPLPMRHLDISRNPFGHEKAVQPLAAALWSFPYMEKLELTADRISSDGAK
LVLRALLDGACPKIKSLDLSLNFLHDGVLEYLADGLGQAAHGLENLEKLG
IGGRFSPDYGVTCFDAIARALAAGGLPKLNFLHLQGDVGPPQVGPLLRKF
KLGACPNLAVVKVERSSRGYPAEDPESTEDAVSSMLELVTSSCAPLLREV
HVLGMNLGEGLEWAEEERTAFYRARNESSFHRLALAGANRGVMIFV*
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mRNA from alignment at P-littoralis_Contig207:288316..291213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig207.58.1 ID=mRNA_P-littoralis_Contig207.58.1|Name=mRNA_P-littoralis_Contig207.58.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2898bp|location=Sequence derived from alignment at P-littoralis_Contig207:288316..291213+ (Pylaiella littoralis U1_48)
CTCGCACTTGACTCACCGCCCATGCCCAACCTTCTCCGTGAGATACCCCA
GACACCCTTCGTGCTTCGACCTCCAACGCAGACACCGGACAGCAATACAC
GAGACAACACCGCCCTACTGCGAGAAGAAATGGCGATGACCTCGAGGCGA
GTGCGTTCTAAGACCTGCCATCATCCTCCATCACGCCGGCCCGGCCTGCG
TTCTTCATCCTCCTCCCGCAGTCGGCAGGTGGCCCCCGTCAACAACAACG
AAGAAGACATGCAGCCGATCTGCGGCGTCGAGCTCCCACACCACATCATG
CTAGAGGTTCTCTCGTTTCTTGACACTCGCGCGATCGTGCGGGGACGGCG
CGTGTCCCGCGCGTTCCGCACCGACGCGCCCGCGTTGATCGACATGCTCG
ATTTTAAAGAGGGGCACGAGTTTCCGTCAGCAACACGGATGAAGGTGTTT
TCCAGAGTCACGGAGGTGCGGGTCGACGGGGACAACAGCCTGGTGCACGC
GGCGGCGGAAGGGCTTCGGGGGTGCCCATCCACGCTGCGCCGTCTGACCA
TCTCCCGGGAACCGTCTGTGGCGCATGAGGCTCCGCTGTCGGAGGACGCC
ACCAAGGACCTCTGTGCCTTGCCACTCCGCGAGCTCGAGACAAGGAGGAT
TGCCCTCGAGTTTCCGTCCGAGCTTCGAATGCCCGCATGGGAAACCTTGG
AGAAGCTCGTGATTCGCGACGCTACTTTGGACGACGTCGCACTGGTCAAC
CTGGTGGCGTCCATCCCCAAGGGCCCTCTCCCTATGCGCCACCTGGACAT
CTCCCGGAACCCTTTCGGGCACGAGAAGGCCGTGCAGCCCCTCGCCGCGG
CGCTCTGGTCATTCCCGTACATGGAGAAGCTCGAGCTTACCGCCGACCGC
ATCTCAAGCGACGGAGCAAAGCTTGTCCTTCGCGCGCTGCTTGACGGCGC
CTGCCCGAAGATCAAGTCCTTAGACCTATCCCTTAACTTCCTGCACGACG
GCGTCCTGGAGTACCTGGCGGACGGGCTGGGGCAGGCCGCCCACGGCCTG
GAGAACCTCGAGAAGCTGGGCATCGGCGGCCGCTTCTCACCCGACTACGG
CGTAACGTGCTTCGATGCGATTGCCCGCGCCCTGGCCGCCGGCGGCCTGC
CCAAGCTTAACTTCCTCCACCTCCAGGGCGACGTGGGCCCGCCGCAGGTG
GGACCCTTGCTGCGTAAGTTTAAGCTGGGGGCGTGCCCGAATCTGGCGGT
GGTCAAGGTGGAGCGATCGAGCCGCGGTTATCCTGCGGAGGACCCGGAGT
CCACAGAGGACGCCGTTAGCAGCATGCTGGAGCTGGTGACCTCATCATGT
GCACCGCTCTTGCGGGAGGTGCACGTTCTGGGCATGAACCTCGGCGAGGG
GCTGGAGTGGGCGGAGGAGGAGCGTACGGCATTCTACAGGGCTAGGAATG
AGTCAAGCTTCCACCGGCTCGCCCTGGCGGGCGCTAACCGAGGTGTCATG
ATTTTCGTGTAGAGGAAGTCCGTTCCCTTTTGCCTCTGTGCAGCAGCCAA
ATTTGGACTGTTTGTTAAGAAAGAAACAACAGAGTGTTACTTCAGTCGAA
ATAGCTCGCAAAGCGCATAACGCACCATAGACTTGCTGATTCCTTAACCA
TGTTGTGTGTCTGTTTTGTGTCTGGGGTTTCGCGTTTACGAAGGGGGTCG
ACCACACCCGAGCTAGCGGTACTCTTTAGTACTCATTGGAGTGTTCGGTT
CGTGTTGCAGGTTTATGTCGGTGCTCTCTTATCCTGTCCTGTTTTTTGTT
TTCCCTCCTCATCCTTGGCGTGGTCTCGAAAACATTGCTTTAGTCGTCTC
ACTACCGGTAGATTTTTTTTGTAATGTTCGAACAACTATTTTTGGTGTCG
GTATCTGTACCATGAAGGGGGGAGACAAGGTTTCCACCTGTTCCATGCGT
GCTGGTGGACATTCAACTTGTAGTGTAATGCAGCTGGTATACTTCTGTCG
TTTTTTAGGTGGACGCACGAGCTCTCGAGCGCCGGTTTGTCTGTCCGACG
TCGACCTCTCTATTTTTCGTTCGTTGCCTTCCTTTCGACTTTGGCCTTTG
CATGTTTTCACGTGAACACTAGTTTTCACAGGCGAAAGGGGTAATCCGGG
ATAAACACCGCATCCGTGCTGGTCGTTTGTTGGTGCCGTTGATCCGTCCT
GTCTGCATGAAGGAAGGGGTGCAGGGTGTACCGTAACGTTACCCTGTCGT
TGATTCTCCAAATTGCTGCTGTATCATACGGAGTACTTGTGCGCCAATCG
GTGTTTGTTCCTCGATGCCGAGCTCATATTTGAACACCAGTTCGATGCAA
ACTTGGATGCAACAAATAGATTCGCCCCCCTCCTGGCTTTGCTACTTGTA
TTTTGGAAATATTTGGTTCTGTTTCTTTTATTGGTCTTCGTTTTTTTTCC
TTGTACTGCTGTATTCGTTCGCTTTAAGAGCGTTGCTGCTCACTTGCGAC
GGCCTCGAAGGTTGTTAACATTTTTTCATCTGTATTTGGTAAAACCAACA
AATCAAGACATGGAAGGGACGCACGGGTGGGGCGATGAAGGAGTTTCAGC
CACTGGTGGGGTATTCCAGGGTGTGATTCACCGGCAAGGTCTATTTTTTT
TTTGTGATCTACAACTGCTGTTTATTTACTACACGCCATGTTTTGTTTTT
TTAGTTGTGTGCCTTCGCTCCCGATGGCGGAGAGACAACCAAGACAAGGT
GTGAAGCTTTGCGGGGTCGGCAATCGGGGGTTTGCTGTTCTTGGTGCGTT
TTCTGGCTGTTACACGTGCTGTTTCATTGTTGACCCCCGGGTACCTGTCG
ACGTAAGAAGCAGATGGAAAGGCAATATGGTGGTCACTTCCGCGGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig207:288316..291213+

>mRNA_P-littoralis_Contig207.58.1 ID=mRNA_P-littoralis_Contig207.58.1|Name=mRNA_P-littoralis_Contig207.58.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1491bp|location=Sequence derived from alignment at P-littoralis_Contig207:288316..291213+ (Pylaiella littoralis U1_48)
ATGCCCAACCTTCTCCGTGAGATACCCCAGACACCCTTCGTGCTTCGACC
TCCAACGCAGACACCGGACAGCAATACACGAGACAACACCGCCCTACTGC
GAGAAGAAATGGCGATGACCTCGAGGCGAGTGCGTTCTAAGACCTGCCAT
CATCCTCCATCACGCCGGCCCGGCCTGCGTTCTTCATCCTCCTCCCGCAG
TCGGCAGGTGGCCCCCGTCAACAACAACGAAGAAGACATGCAGCCGATCT
GCGGCGTCGAGCTCCCACACCACATCATGCTAGAGGTTCTCTCGTTTCTT
GACACTCGCGCGATCGTGCGGGGACGGCGCGTGTCCCGCGCGTTCCGCAC
CGACGCGCCCGCGTTGATCGACATGCTCGATTTTAAAGAGGGGCACGAGT
TTCCGTCAGCAACACGGATGAAGGTGTTTTCCAGAGTCACGGAGGTGCGG
GTCGACGGGGACAACAGCCTGGTGCACGCGGCGGCGGAAGGGCTTCGGGG
GTGCCCATCCACGCTGCGCCGTCTGACCATCTCCCGGGAACCGTCTGTGG
CGCATGAGGCTCCGCTGTCGGAGGACGCCACCAAGGACCTCTGTGCCTTG
CCACTCCGCGAGCTCGAGACAAGGAGGATTGCCCTCGAGTTTCCGTCCGA
GCTTCGAATGCCCGCATGGGAAACCTTGGAGAAGCTCGTGATTCGCGACG
CTACTTTGGACGACGTCGCACTGGTCAACCTGGTGGCGTCCATCCCCAAG
GGCCCTCTCCCTATGCGCCACCTGGACATCTCCCGGAACCCTTTCGGGCA
CGAGAAGGCCGTGCAGCCCCTCGCCGCGGCGCTCTGGTCATTCCCGTACA
TGGAGAAGCTCGAGCTTACCGCCGACCGCATCTCAAGCGACGGAGCAAAG
CTTGTCCTTCGCGCGCTGCTTGACGGCGCCTGCCCGAAGATCAAGTCCTT
AGACCTATCCCTTAACTTCCTGCACGACGGCGTCCTGGAGTACCTGGCGG
ACGGGCTGGGGCAGGCCGCCCACGGCCTGGAGAACCTCGAGAAGCTGGGC
ATCGGCGGCCGCTTCTCACCCGACTACGGCGTAACGTGCTTCGATGCGAT
TGCCCGCGCCCTGGCCGCCGGCGGCCTGCCCAAGCTTAACTTCCTCCACC
TCCAGGGCGACGTGGGCCCGCCGCAGGTGGGACCCTTGCTGCGTAAGTTT
AAGCTGGGGGCGTGCCCGAATCTGGCGGTGGTCAAGGTGGAGCGATCGAG
CCGCGGTTATCCTGCGGAGGACCCGGAGTCCACAGAGGACGCCGTTAGCA
GCATGCTGGAGCTGGTGACCTCATCATGTGCACCGCTCTTGCGGGAGGTG
CACGTTCTGGGCATGAACCTCGGCGAGGGGCTGGAGTGGGCGGAGGAGGA
GCGTACGGCATTCTACAGGGCTAGGAATGAGTCAAGCTTCCACCGGCTCG
CCCTGGCGGGCGCTAACCGAGGTGTCATGATTTTCGTGTAG
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