mRNA_P-littoralis_Contig207.47.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig207.47.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE) HSP 1 Score: 429 bits (1102), Expect = 4.910e-149 Identity = 214/222 (96.40%), Postives = 217/222 (97.75%), Query Frame = 2
Query: 272 LFYSKKEVNKYNGKKLRGLDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGARVMLSKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFEGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITVHKSQGQTLAKAVIDLGPTEACTGLTFVCLSRAKRLVDLMVEPMSLDRIGNLGNSLTMKARLQEEVRLGELAQST 937
LFYSKKEVNKYNGKKLR LDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGA+VMLSKNLYQQVGLVNGIRGEVVELV ADDAPPPKLPLYVVVKFEGYSGG+WSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAIT+HKSQGQTLAKAVIDLGP EACTGLTFVCLSRAKRLVDLMVEPMS DRIGNLGNS TMKARLQEEVRLGELAQST
Sbjct: 52 LFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 273
BLAST of mRNA_P-littoralis_Contig207.47.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 426 bits (1096), Expect = 1.280e-133 Identity = 212/221 (95.93%), Postives = 215/221 (97.29%), Query Frame = 2
Query: 245 KADFEDATRLFYSKKEVNKYNGKKLRGLDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGARVMLSKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFEGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITVHKSQGQTLAKAVIDLGPTEACTGLTFVCLSRAKRLVDLMVEPMSLDRIGNLGNSLTMKARLQEE 907
KA FEDATRLFYSKKEVNKYNGKKLR LDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGA+VMLSKNLYQQVGLVNGIRGEVVELV ADDAPPPKLPLYVVVKFEGYSGG+WSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAIT+HKSQGQTLAKAVIDLGP EACTGLTFVCLSRAKRLVDLMVEPMS DRIGNLGNS TMKARLQEE
Sbjct: 1348 KAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 1568
BLAST of mRNA_P-littoralis_Contig207.47.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE) HSP 1 Score: 355 bits (910), Expect = 2.390e-117 Identity = 175/182 (96.15%), Postives = 178/182 (97.80%), Query Frame = 2
Query: 392 DTAEGLERDLYLAKGARVMLSKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFEGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITVHKSQGQTLAKAVIDLGPTEACTGLTFVCLSRAKRLVDLMVEPMSLDRIGNLGNSLTMKARLQEEVRLGELAQST 937
DTAEGLERDLYLAKGA+VMLSKNLYQQVGLVNGIRGEVVELV ADDAPPPKLPLYVVVKFEGYSGG+WSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAIT+HKSQGQTLAKAVIDLGP EACTGLTFVCLSRAKRLVDLMVEPMS DRIGNLGNS TMKARLQEEVRLGELAQST
Sbjct: 266 DTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 447
BLAST of mRNA_P-littoralis_Contig207.47.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE) HSP 1 Score: 322 bits (825), Expect = 2.870e-104 Identity = 158/164 (96.34%), Postives = 160/164 (97.56%), Query Frame = 2
Query: 446 MLSKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFEGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITVHKSQGQTLAKAVIDLGPTEACTGLTFVCLSRAKRLVDLMVEPMSLDRIGNLGNSLTMKARLQEEVRLGELAQST 937
MLSKNLYQQVGLVNGIRGEVVELV ADDAPPPKLPLYVVVKFEGYSGG+WSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAIT+HKSQGQTLAKAVIDLGP EACTGLTFVCLSRAKRLVDLMVEPMS DRIGNLGNS TMKARLQEEVRLGELAQST
Sbjct: 1 MLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 164
BLAST of mRNA_P-littoralis_Contig207.47.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE) HSP 1 Score: 298 bits (763), Expect = 1.190e-93 Identity = 166/231 (71.86%), Postives = 168/231 (72.73%), Query Frame = 2
Query: 245 KADFEDATRLFYSKKEVNKYNGKKLRGLDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGARVMLSKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFEGYSGGDWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITVHKSQGQTLAKAVIDLGPTEACTGLTFVCLSRAKRLVDLMVEPMSLDRIGNLGNSLTMKARLQEEVRLGELAQST 937
KA FEDATRLFYSKKEVNKYNGKKLR LDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGA+VMLSKNLYQQVGL DGGTQVRTQLPLRLCWAIT+HKSQGQTLAKAVIDLGP EACTGLTFVCLSRAKRLVDLMVEPMS DRIGNLGNS TMKARLQEEVRLGELAQST
Sbjct: 271 KAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGL----------------------------------------------------------DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 443
BLAST of mRNA_P-littoralis_Contig207.47.1 vs. uniprot
Match: A0A6S7LS63_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7LS63_PARCT) HSP 1 Score: 214 bits (545), Expect = 3.800e-65 Identity = 108/230 (46.96%), Postives = 160/230 (69.57%), Query Frame = 2
Query: 251 DFEDATRLFYSKKEVNKYNGKKLRGLDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGARVMLSKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFEGYSGGDWSSQERYRRCVPISPVDTTWQ-DGGTQVRTQLPLRLCWAITVHKSQGQTLAKAVIDLGPTEACTGLTFVCLSRAKRLVDLMVEPMSLDRIGNLGNSLTMKARLQEEVRLGELAQST 937
DFED+TRLFYS ++V YN ++L L++P+A ++A H+ A A++ ++D GLE ++LAKGARVML+ NL+ VGL NG G VV+++Y ++ PP LP+ V+V+FE Y G ++ E C+PI P+ T Q + G R QLPLRL WA+T+HKSQG TL KA ID+G +E G+++V +SR K L ++EPM+ +R+ +L +S ++ RL+EE RL +LAQ+T
Sbjct: 15 DFEDSTRLFYSNEQVGNYNHEQLTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFN--ESRPLCIPIYPITVTSQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSLKSSANLQYRLEEENRLDQLAQTT 242
BLAST of mRNA_P-littoralis_Contig207.47.1 vs. uniprot
Match: A0A7D9HJE5_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HJE5_PARCT) HSP 1 Score: 213 bits (542), Expect = 2.400e-64 Identity = 107/230 (46.52%), Postives = 159/230 (69.13%), Query Frame = 2
Query: 251 DFEDATRLFYSKKEVNKYNGKKLRGLDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGARVMLSKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFEGYSGGDWSSQERYRRCVPISPVDTTWQ-DGGTQVRTQLPLRLCWAITVHKSQGQTLAKAVIDLGPTEACTGLTFVCLSRAKRLVDLMVEPMSLDRIGNLGNSLTMKARLQEEVRLGELAQST 937
DFED+TRLFYS ++V YN ++L L++P+A ++A H+ A A++ ++D GLE ++LAKGARVML+ NL+ VGL NG G VV+++Y ++ PP LP+ V+V+FE Y G ++ E C+PI P+ Q + G R QLPLRL WA+T+HKSQG TL KA ID+G +E G+++V +SR K L ++EPM+ +R+ +L +S ++ RL+EE RL +LAQ+T
Sbjct: 41 DFEDSTRLFYSNEQVGNYNHEQLTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFN--ENQPLCIPIIPITVASQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSLKSSANLQYRLEEENRLDQLAQAT 268
BLAST of mRNA_P-littoralis_Contig207.47.1 vs. uniprot
Match: UPI00106C62E8 (ATP-dependent DNA helicase PIF6-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C62E8) HSP 1 Score: 209 bits (533), Expect = 4.790e-63 Identity = 108/230 (46.96%), Postives = 156/230 (67.83%), Query Frame = 2
Query: 251 DFEDATRLFYSKKEVNKYNGKKLRGLDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGARVMLSKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFEGYSGGDWSSQERYRRCVPISPVDTTWQ-DGGTQVRTQLPLRLCWAITVHKSQGQTLAKAVIDLGPTEACTGLTFVCLSRAKRLVDLMVEPMSLDRIGNLGNSLTMKARLQEEVRLGELAQST 937
DF DATRLFYS ++V YN ++L L++P+A ++A H+ A A++ +AD GLE +LAKGARVML+ NL+ VGL NG G VV++VY ++ PP LP+ V+++FE Y G ++ + CVPI P+ + Q + G QLPLRL WA+T+HKSQG TL KA ID+G TE G+++V +SR K L ++EPM+ +R+ +L +S ++ RL+EE RL LAQ+T
Sbjct: 41 DFADATRLFYSNEQVANYNSEQLTKLEHPIAHINARHSSAFAKKLSADDMSGLEPVAFLAKGARVMLTMNLWSSVGLCNGATGIVVDIVYQNNHQPPDLPIVVIIEFENYRGPAFNVDKP--SCVPICPITVSSQSETGFHELQQLPLRLAWALTIHKSQGLTLPKAWIDIGKTERTAGVSYVAISRVKLLSSCVIEPMTYERLTSLKSSANLQYRLEEENRLDRLAQTT 268
BLAST of mRNA_P-littoralis_Contig207.47.1 vs. uniprot
Match: A0A6S7K7R3_PARCT (ATP-dependent DNA helicase (Fragment) n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K7R3_PARCT) HSP 1 Score: 215 bits (547), Expect = 1.420e-61 Identity = 108/230 (46.96%), Postives = 160/230 (69.57%), Query Frame = 2
Query: 251 DFEDATRLFYSKKEVNKYNGKKLRGLDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGARVMLSKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFEGYSGGDWSSQERYRRCVPISPVDTTWQ-DGGTQVRTQLPLRLCWAITVHKSQGQTLAKAVIDLGPTEACTGLTFVCLSRAKRLVDLMVEPMSLDRIGNLGNSLTMKARLQEEVRLGELAQST 937
DFED+TRLFYS ++V YN ++L L++P+A ++A H+ A A++ ++D GLE ++LAKGARVML+ NL+ VGL NG G VV+++Y ++ PP LP+ V+V+FE Y G ++ E C+PI P+ T Q + G R QLPLRL WA+T+HKSQG TL KA ID+G +E G+++V +SR K L ++EPM+ +R+ +L +S ++ RL+EE RL +LAQ+T
Sbjct: 368 DFEDSTRLFYSNEQVTNYNHEQLTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNDQPPDLPIAVIVEFENYRGPVFN--ENQPLCIPIYPITVTSQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRIKSLASCIIEPMTCERLTSLKSSANLQYRLEEENRLNQLAQAT 595
BLAST of mRNA_P-littoralis_Contig207.47.1 vs. uniprot
Match: A0A7D9EBM6_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EBM6_PARCT) HSP 1 Score: 206 bits (524), Expect = 1.740e-61 Identity = 104/230 (45.22%), Postives = 156/230 (67.83%), Query Frame = 2
Query: 251 DFEDATRLFYSKKEVNKYNGKKLRGLDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGARVMLSKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFEGYSGGDWSSQERYRRCVPISPVDTTWQ-DGGTQVRTQLPLRLCWAITVHKSQGQTLAKAVIDLGPTEACTGLTFVCLSRAKRLVDLMVEPMSLDRIGNLGNSLTMKARLQEEVRLGELAQST 937
DFEDATRLFYS ++V YN ++L L++P+A ++A H+ A A++ + D GLE ++LAKGARVML+ NL+ VGL NG G VV+++Y ++ PP LP+ ++V+F+ Y G + + CVPI P+ + Q + G R QLPLRL WA+++HKSQG TL K ID+G +E G+++V +SRAK L ++EPM+ +R+ +L +S + RL+EE RL + AQ+T
Sbjct: 53 DFEDATRLFYSNEQVANYNHEQLIKLEHPIAHINARHSSALAKKISPDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPVAIIVEFDNYRGPVFDDNKP--SCVPICPITVSSQTEIGFHERQQLPLRLAWALSIHKSQGLTLPKVWIDIGKSERTAGVSYVAISRAKTLASCVIEPMTYERLTSLKSSANLPYRLEEENRLDQFAQTT 280 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig207.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig207.47.1 >prot_P-littoralis_Contig207.47.1 ID=prot_P-littoralis_Contig207.47.1|Name=mRNA_P-littoralis_Contig207.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=164bp MLSKNLYQQVGLVNGIRGEVVELVYADDAPPPKLPLYVVVKFEGYSGGDWback to top mRNA from alignment at P-littoralis_Contig207:239353..240289+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig207.47.1 ID=mRNA_P-littoralis_Contig207.47.1|Name=mRNA_P-littoralis_Contig207.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=937bp|location=Sequence derived from alignment at P-littoralis_Contig207:239353..240289+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig207:239353..240289+ >mRNA_P-littoralis_Contig207.47.1 ID=mRNA_P-littoralis_Contig207.47.1|Name=mRNA_P-littoralis_Contig207.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig207:239353..240289+ (Pylaiella littoralis U1_48)back to top |