prot_P-littoralis_Contig206.48.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig206.48.1
Unique Nameprot_P-littoralis_Contig206.48.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length580
Homology
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BLAST of mRNA_P-littoralis_Contig206.48.1 vs. uniprot
Match: D7FXC1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC1_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 3.520e-36
Identity = 81/105 (77.14%), Postives = 88/105 (83.81%), Query Frame = 0 
Query:   98 PVPALAASVRDNAPDAPGVFDPSRQLEPGQGVRERVELLLRLKDMGRRFEWRGALKVFRKAKAGGMVPDNSVYSCVIGVVAKSGRWSEAVELLREAR-DVAGLEP 201
            PV AL AS RDNAPDAP VFD SR  E  +  RERVEL+LRLKDMGRRFEWRGA+KVFR+A+A GMV DNSVYSC+I VVAKSGRWSEAVELL+EAR D AGL P
Sbjct:   35 PVGALDASARDNAPDAPRVFDASRGCE-SEAARERVELVLRLKDMGRRFEWRGAVKVFRRARARGMVMDNSVYSCIISVVAKSGRWSEAVELLQEAREDPAGLAP 138
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BLAST of mRNA_P-littoralis_Contig206.48.1 vs. uniprot
Match: A0A6H5L8D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D4_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.850e-34
Identity = 79/105 (75.24%), Postives = 89/105 (84.76%), Query Frame = 0 
Query:   98 PVPALAASVRDNAPDAPGVFDPSRQLEPGQGVRERVELLLRLKDMGRRFEWRGALKVFRKAKAGGMVPDNSVYSCVIGVVAKSGRWSEAVELLREAR-DVAGLEP 201
            PV AL AS RDNAPDAP VFD SR  E  +  RER+EL+LRLKDMGRRFEWRGA+KVFR+A+A GMV DNSVYSC+I VVAKSGRWSEAVELL+EA+ D AGL+P
Sbjct:   42 PVGALDASARDNAPDAPRVFDASRGCE-SEAARERIELVLRLKDMGRRFEWRGAVKVFRRARARGMVMDNSVYSCIISVVAKSGRWSEAVELLQEAKEDPAGLDP 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig206.48.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXC1_ECTSI3.520e-3677.14PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L8D4_9PHAE3.850e-3475.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 150..266
e-value: 5.8E-7
score: 29.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 351..399
e-value: 5.9E-9
score: 35.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 274..322
e-value: 3.4E-9
score: 36.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 312..341
e-value: 1.9E-4
score: 19.4
coord: 277..310
e-value: 1.7E-7
score: 29.0
coord: 204..238
e-value: 4.7E-6
score: 24.4
coord: 169..202
e-value: 0.0023
score: 16.0
coord: 355..389
e-value: 2.0E-6
score: 25.6
coord: 390..423
e-value: 9.1E-6
score: 23.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 237..267
score: 9.218511
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 388..422
score: 10.424253
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 275..309
score: 11.871145
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 166..201
score: 8.659485
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 353..387
score: 11.41077
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 202..236
score: 10.577712
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 310..344
score: 10.829822
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 346..446
e-value: 2.1E-21
score: 78.1
coord: 127..246
e-value: 4.0E-27
score: 96.7
coord: 247..345
e-value: 5.8E-27
score: 96.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 445..493
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 475..493
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 271..435
coord: 127..435

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig206contigP-littoralis_Contig206:309894..318074 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig206.48.1mRNA_P-littoralis_Contig206.48.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig206 309894..318411 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig206.48.1 ID=prot_P-littoralis_Contig206.48.1|Name=mRNA_P-littoralis_Contig206.48.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=580bp
MLTFTLPQWQRPELLAQLPGRYSHRRNGSSSRSSSIRSSSRPTTTVACRF
AASPPQHSCESSWQQHQHQHLHHQHHQHQHPVRRRGRRRPRPTPEGVPVP
ALAASVRDNAPDAPGVFDPSRQLEPGQGVRERVELLLRLKDMGRRFEWRG
ALKVFRKAKAGGMVPDNSVYSCVIGVVAKSGRWSEAVELLREARDVAGLE
PNKYCYTAAVSACARGRNWELALSLLDEMTGVGLRPDEVTYGAAVSAMAR
TGQWRRALGLLRRMTEEEGGGVVPNVVCYGAAVDACAKGGQWERAVGLLG
EMREAGIEPDRICYNTAINACAQSGQWEIALHLSDEMERLSARPGDDGAR
RPDVFTYNSIMHGMAGVGEWRQLLSVLDGMREAGVAPDVVSFNTAMAACN
KARQHEVALSTFEDMRVAGVIPDKETFSAAAEACACISDHHHNDHDIHGD
EDHTCAPPAPSATPPAAPAAAAADSSGSGSDSDGSSCSSSASRMGARAMG
IMKMAREQGLRRPGAKAVAATLGACVGGGPWRKAIPAVEEMLVASGEGGR
FAWDDVMDFLAKAQQQQQQKQQSRRRRKGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf