mRNA_P-littoralis_Contig205.77.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig205.77.1
Unique NamemRNA_P-littoralis_Contig205.77.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig205.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig205contigP-littoralis_Contig205:382216..387979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size595
Hectar predicted targeting categorymitochondrion
Exons3
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.8697443-UTR-P-littoralis_Contig205:382215..3824091680789999.8697443-UTR-P-littoralis_Contig205:382215..382409Pylaiella littoralis U1_48UTRP-littoralis_Contig205 382216..382409 -
1680789999.9227345-UTR-P-littoralis_Contig205:387971..3879791680789999.9227345-UTR-P-littoralis_Contig205:387971..387979Pylaiella littoralis U1_48UTRP-littoralis_Contig205 387972..387979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.880243-CDS-P-littoralis_Contig205:382409..3824531680789999.880243-CDS-P-littoralis_Contig205:382409..382453Pylaiella littoralis U1_48CDSP-littoralis_Contig205 382410..382453 -
1680789999.8905096-CDS-P-littoralis_Contig205:382623..3826791680789999.8905096-CDS-P-littoralis_Contig205:382623..382679Pylaiella littoralis U1_48CDSP-littoralis_Contig205 382624..382679 -
1680789999.9104125-CDS-P-littoralis_Contig205:387678..3879711680789999.9104125-CDS-P-littoralis_Contig205:387678..387971Pylaiella littoralis U1_48CDSP-littoralis_Contig205 387679..387971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig205.77.1prot_P-littoralis_Contig205.77.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig205 382410..387971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig205.77.1

>prot_P-littoralis_Contig205.77.1 ID=prot_P-littoralis_Contig205.77.1|Name=mRNA_P-littoralis_Contig205.77.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MLTSKQRWRRVPVRQGKGASRRPLSSSSATTTAAAAAAGSGVTEHDATAT
ATVENMHASSKKVRFHSTVRVILVPCVEEIRHLSAQLWWGKGDYLHFRRE
FLHTLKSKAAAARQQAPVRRSRRFSTRGRA*
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mRNA from alignment at P-littoralis_Contig205:382216..387979-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig205.77.1 ID=mRNA_P-littoralis_Contig205.77.1|Name=mRNA_P-littoralis_Contig205.77.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5764bp|location=Sequence derived from alignment at P-littoralis_Contig205:382216..387979- (Pylaiella littoralis U1_48)
GGAGAGGGATGCTGACAAGCAAGCAAAGATGGCGCAGAGTTCCTGTTCGC
CAGGGGAAAGGGGCGTCGCGCAGGCCATTATCATCATCATCAGCAACAAC
AACAGCAGCAGCAGCAGCAGCAGGTAGCGGGGTGACCGAGCACGATGCTA
CAGCAACTGCGACCGTGGAAAACATGCACGCGAGCAGCAAAAAAGTCCGC
TTCCACAGCACCGTACGAGTCATCCTGGTGCCGTGCGTGGAAGAGATTCG
TCACCTCAGCGCACAGCTGTGGTGGGGGAAGGGAGACTACCTGCATTTTC
GGTGAGAGCAGCGCGCGTACGGTGGGCGACCTCTTATGTTTCCCGCACGG
TGTTCGGTCCTCCCGCACGGCGTGTCTGTCTTCTTGTACTTACTCGTTCT
GTCTCGGGGGGAAATTCCCGAACATTTTGACATGCAGTCAAGAGCCGTTG
AGGACGATTGTCGCTTTGTTGCCGTTTGTCCACCAACTCACGTGACCACA
ACTCACTACTTCATACACCACCACATCAGCAGTAGGTGGTACGGGTAGCG
ATGTCGTTTTTTTTGTTTCCTTCCTTGCTTGTGGTTGCGGTATCTCGAAC
GTTTTTGTATGTGAAGGGCTTGTCTTCACTTTGTTTCCAAGTCGGTATAG
TCTGGTAGTCGTTATGAGTGCATCATGGACATGAAAAGAGCCCCCGTGCG
TGTACGCCACACACAACAACCCTCCCAACCACTCTATGTGTCCGTCACTC
CTGGTCTCTGATCACCAGATTATCGCCACCACCAAACCAACCCTCGGGCT
GTAGGCCTCATGTATCTGGGCATCTCTGCAGTGTGTTGTTGGAATTGTCG
TGGGTTTCTCTTGGCTGGAGAATAGTTGATATACTTCCTCTGTATCATAA
GTCTGTGCCGTTATGTTTTTACGCCCCCTCAACGGTGTCCGATGTCTTCG
GCGATAATTTTTTCGAAATCTTCGGAGTTTTTTGGGTTGAAACACATACT
CCGGAGTATATATTTTTTTCTTGCGCACTACCCTGCGCATGGGCTAGCGG
CTAACAAAAAAGTAGTCAGGCCAAAAATGGCCGTATTTAACCCTTTCCAG
AGGTGGAGTGGGGGGCGGGGGCAAAAAAAAAAACAATGCAATCCCCCCCA
AAATCATCCCTAACCCTGAACCTAGCCCCCCTACCTCAAAGATTCATGTC
GAGTCCCTCCTTATTAAAATCAGTATAATAGTGACGCGACGCTAAAACCA
AGACACTTGGGTTTGCCACACTAAAACGAAGATACTTGGGACTCATGCTC
TAAAACCAAGACATCTGGCGGAATCAAAATTCTTTAAATGGGCCAAAATG
GGCATATTTTGACTTCATTTTAGTATAAACAACTGGCTTTTTTTTTTGCT
TTTTTTGCATCAGCTTCTTTGAGACTTCATCTTTCGAACGAACCTAACTA
GAAGATGATCGAAACAGTATGGATGCGCAAACAAGTACACGCACCTAACA
GCCCAGACTTATGATACAGAGGAAGTACGAAACAAGCTCGAGAGAGCAAA
AACCAATTTTAGTTCGAAAAAATCAAATCAGTGCGAGAATCTATCGTCAT
CATCATCAGCTGACAGATTTTGCGTGCGGATGATGTTCACTCTTGCCAAC
ATGGGTCGATCGTGCTCAACCCACATGAAGCCCACGATAACAAAAACTAG
CTCCACACGGAGGAGCCCAGAGGTAGGAGCACTAAGTCTCAGGGTTTCTA
CAGAATTTGAGCGAGTTTCACTCACGTTGAGAAACGTAGAGAAGCATCGG
TTTTACACAAGCCCGAGATTGAAGACATTTCCTGTGAAAACCCCCTGCTG
CCTCAAACACGGGCGGATGTTTGCTTCTTCTTGCTGACATGGATCGATCA
TGCTCACCACACACGAAGCCCACGACGGTAAAACCTGGTACTTGCGAAGA
AGCTCAGAAATTGATGGCTTGCAACCCCTCGGTGGTGTGGTAGCGATTCG
GTGCCCACGTGGAAAATACCGTACAGGTGTTGTGTCGTGTGTGGTAAGTA
TTTTTGTTGTGGAGGGCAAGGACAAAGCGCCACTGGAGAAGCTGCTCTTG
CCACGCATGAATACAGAACGCTTGGAGCACCCGATGAAAAATGATTGCTT
CTTAATTTTAATTCCTTGGAAAATGACGGCACACATACATACAGGCCGTA
TGTTCACCACACGATGTACCGTGTGTGTCACACGAAACGACCCCCGAATT
GTCTTGTTGAGCCTGGTAACCCCAAGGGGGGCTGCAACGATGTGTTATCT
GTCGAGTCGTAGAAGCACAAGTCGGTGTATTACTCTCGGTGGTCGTCGCT
AATCTACTCCAGGTCCTCGTCTAGAGAGAGGCGAACACGCACTGAATAGA
TATCTGTGTAAAAAATACATCAATGTGTCCGTCTCTCTCAGACGAGGATC
TGGAGTACATTAGCAATTGACACAACGAACAAGATTCATCTACCTGTGTT
TCTATGATATGACTCATCGGATAATGTTAGAAATAGAAGCGATCTTTAGG
GGGCATCAATGGCCAGGAAGGTTTTTGTACAGTCTCTGCTTTTTTTTTTC
CCGGTTGACAAATGCAAGAGGCGTGACTTGGTTATTATACAGAGCTCATA
CAGCAAGTACAGATGAAAGTGTCCCCATTTCCCCCCAAAATATGGGGACT
TTGCCTTATGTGGCCAAGTCATTTCAATTTGAGGTGCTTGAGCATCTACA
CAGCCATATCCGCCGTGCCAATACCAGGATGGACCACGAAACCTACAAAG
CAGACATACCACCACCCCCGAATAAGGCACAACACGCCTGCTACACTCAA
ACCTTTTGCGGCTGTTGATCGCGTCGAACAGCAGCCAGGTGTTGTCCTAT
AAAATATCGGTGTCCGTCCCGAAATCGTCCCCATTCATTTGTTGTGCGAC
CAGGAGCACAGAACAAAGAGAGGGATTGAATCCGCGTGAAAAATATCCGG
AACCACCCAGAACACATCCAGCCTGCGCCGAGGAGAGCGACATTGAGTCT
GCGTACCTGCTGTTAATACGCCAGCAGCGTGTAAAAGCAATGTAAAAGCA
TTTCGCGTTGATTACGGCCCCAAACAACCTCCTCCAATTACCGCACTACT
TGAGGAAGCCCTTCCACTTACTTGTGGAGTGCTGTTTCTTCGTCACCGTC
CCGTATCTCTGTATCCCTACTTTGGTCTTCTCTCAATCGTCGCAAAATAA
TACTCCGGAGTACATACCTGGTACCAAGTAACCCGAGCGTACACTGACTG
TATATCCCCGGATCGCTTAAAGACACAGGATGTTACTCTCTGCTGGAAAA
CAAGTGAGCGGGCGGGAGGGGACCACAAAGGGTTTTCAACCCGCCCCCTC
GTCGTTCCTGCTAGTCTACCCTCTTCCATCTCCCTGTACTCCTCGCCCCT
TTCCCCGGAGCCATGTCACCGTCTCTCCCCGTATCTACCTCCGACAGCGT
GTTTCATTCCAACGATACCGCGTACCTCCAATCTCCCCCTTACACCCCAC
CGATTCAGTCCCGCTCTTCAAACGCTAGATTCACCGCGATTATTCAATTT
ACACGACTTTATTTGAGTTTTCCTGCCTCGCACGATATGTGCCTGGTTTT
GTGACCGCGGGCGGCACAATGACAGCGGGTGAGCCACTGTGAAAAACAAA
CACCATTACTGCCTCTATATCTAAACATTTCGCTTCTTGAGTTTCAATTG
GCACCGCCAGATTATGAGTGAGCAGCTTACATACCCAGCACATTCTGCTA
CTGCACCGGATACATTATAAGGTGAATCAACATACGGGTTTGCTTGCAGC
TACCGTGGGATCCTGTTTGCATTTGAGAAAGTAAACTGGCGATCGCAACC
CGGATGTTTTATGGCGACCCAACACCAGGTATCAAATAGCAGAGTTGCGA
AGAAGGGAACTTTCATACCAAACTTGAAGAAGCAAGGACTCTTGTTGATT
TGGATGCACATGCGCAATCGAGTTGCTCCCTCTGAGCATCGCAGCCACGA
AAACAAAATTTCACGCATCTGGAAATCATTCGATACCTTTTTTCGTCTTG
CACACTTCGAATAGTGTGTTCCGCGCGTCCTCGCCTGAAATGAAAGGATT
GGCCGACGTACGCATGTTCACATTTCGATACGCGCAAACACGCCGTCGCT
TTTGAATGGAGACAATCAAGGGATGCGAATGCCGTCTATCAATATTGCCA
TGTACAGGGATTAATTCTCCGACGATTCCCACACACACGTCTCGTTGTGT
CACAGATATATCCGGTACGAATTGGCACATACACTTGTATATCCCGCTGC
ATTTGTGCTTTTCACGCGCCCCGAGCGTAGCGTATCATCGACCCGCTTTT
TCACAAGCTGAGCTTCCCGCATAGTTTCCCACCGCCGCCGTAAGAGCATT
GGAAGATTCTGTTCTAAGCCCCTCCGAGACATGCACGTACAAATAGTAAG
TACGCGAGGCTCCATACACACGCTCCACCTGTCTGTCATTTCCCGCTGAC
CCTCTACCATATCGTACAAACGAGCTCGCGGTACTACCATAATAAAGAGT
AGCGCGTTTGAACCCACGAATCACCTAGCTCGCCCACCCGCCTCCGACCC
GCTCCTCAAGACAAGCCCCTCGTCTCTTGGGCGTGCCCCACCGATCACCC
CCGAACTCTGAATGCAGCCTCGAGTTCCTTCTCACGTTGAAGTCGAAAGC
CCTGGATGCGCGCGAACAAGAACAACAGGAGCAATCACACCCCATCCCCG
AAGCAGCTATCGCCGCCCCCGCTGACGGTGTTATCGCAGTCAGCGGGGGC
GGCGATAGCTGCCTCGGGGATAGGGTGTGACTGTTCCTGTTGTTCTTGTT
TGAGCGCATCCGCGGCTTTCGACTTCAACGTGAGAAGGAACTCGCGGCTT
CATTCAAAGTTCGGGGGTGATCGGTGGGGCAAGCGCAAGAGACGAGGGGC
TTGTCTTGAGGAGCGGGTCGGAGGCGGGTGGGCGAGCGAGATGATTCGTG
GGTTCAAACGCGCTGCTATTTTTGTGATAGTGCCGTGAGCTCGTTTGTGC
GATACCGTAGAGGGTCAGCGGGAAATGACAGACAGGTGGAGGGTGTGTAT
GGAGCCTCGCTTGCTACGTACGTTCATGTCTCGAAGAGGCTTTGAAGCAC
GAATCATCTCGCTCGCCCACCCGTCTCCGACCCGCTCCTCAACACAAGCC
CCTCGTCTCGTGCGCTTGCCCCACCGATCACCCCCGAACTTTAAATGCAG
CCGCGAGTTCCTTCACACGTTGAAGTCGAAAGCCGCGGCTGCGCGCCAAC
AAGCACAGCAGGGGCAGTCACACCCCATCCTAGCTGTAGCAGGAGCAGGG
GAATCACACGTGATGTTGGAACCAACGACGAAGGATGAGAAGGCGGAAGG
AGAGAAGGCGCCGCTGGGGCTGCCGCCGCGAAGGCCGCTCTCGTCGGGAC
CCGGGTCGCAATCGGCAGCACCGGCACCGTGCGGAGGAGTAGACGGTTCA
GCACGCGCGGCCGTGCATGAGGACGAGGACGACGACGGATACCACACGGC
GGCGGACGAGGAGGAGAAAGACGAGGGCAGGGACCGTCGAATACACTCCA
CGAGTTCGGGGTCGTCCGACACACGGGAGGCACGGGAGGCACGGGAGGTG
GGGGTGATGGCTTGTGGTTCTCGTGACGGAAATGTCATCAATGGAGACCG
AGGGGAGAATGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig205:382216..387979-

>mRNA_P-littoralis_Contig205.77.1 ID=mRNA_P-littoralis_Contig205.77.1|Name=mRNA_P-littoralis_Contig205.77.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig205:382216..387979- (Pylaiella littoralis U1_48)
ATGCTGACAAGCAAGCAAAGATGGCGCAGAGTTCCTGTTCGCCAGGGGAA
AGGGGCGTCGCGCAGGCCATTATCATCATCATCAGCAACAACAACAGCAG
CAGCAGCAGCAGCAGGTAGCGGGGTGACCGAGCACGATGCTACAGCAACT
GCGACCGTGGAAAACATGCACGCGAGCAGCAAAAAAGTCCGCTTCCACAG
CACCGTACGAGTCATCCTGGTGCCGTGCGTGGAAGAGATTCGTCACCTCA
GCGCACAGCTGTGGTGGGGGAAGGGAGACTACCTGCATTTTCGCCGCGAG
TTCCTTCACACGTTGAAGTCGAAAGCCGCGGCTGCGCGCCAACAAGCACC
CGTGCGGAGGAGTAGACGGTTCAGCACGCGCGGCCGTGCATGA
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