mRNA_P-littoralis_Contig203.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig203.78.1
Unique NamemRNA_P-littoralis_Contig203.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig203.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig203contigP-littoralis_Contig203:305632..308568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size887
Hectar predicted targeting categoryother localisation
Exons2
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789993.2219474-CDS-P-littoralis_Contig203:305631..3061101680789993.2219474-CDS-P-littoralis_Contig203:305631..306110Pylaiella littoralis U1_48CDSP-littoralis_Contig203 305632..306110 +
1680789993.2342188-CDS-P-littoralis_Contig203:308160..3082211680789993.2342188-CDS-P-littoralis_Contig203:308160..308221Pylaiella littoralis U1_48CDSP-littoralis_Contig203 308161..308221 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789993.2443235-UTR-P-littoralis_Contig203:308221..3085681680789993.2443235-UTR-P-littoralis_Contig203:308221..308568Pylaiella littoralis U1_48UTRP-littoralis_Contig203 308222..308568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig203.78.1prot_P-littoralis_Contig203.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig203 305632..308221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig203.78.1

>prot_P-littoralis_Contig203.78.1 ID=prot_P-littoralis_Contig203.78.1|Name=mRNA_P-littoralis_Contig203.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=180bp
PHPAFPIIVVLRHRIFFISSSGPKSTEASKGRGRDGSSVFFLLRRSCGHP
TKILGRGNSRFQALERARKETRTNSERERETDRQTERETRQRASAQRYTR
EAATERERGSEREREGERGRETRCISEIFGREKIGHKQTLLCRRDIVLEA
LFHRTLQLHQTAAVFREHQPPLFRGPLRS*
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mRNA from alignment at P-littoralis_Contig203:305632..308568+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig203.78.1 ID=mRNA_P-littoralis_Contig203.78.1|Name=mRNA_P-littoralis_Contig203.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2937bp|location=Sequence derived from alignment at P-littoralis_Contig203:305632..308568+ (Pylaiella littoralis U1_48)
CCTCATCCAGCTTTCCCGATCATCGTCGTGCTCCGACATCGTATATTCTT
CATCAGTTCTTCTGGCCCTAAATCTACCGAAGCTTCGAAGGGCCGCGGCC
GTGACGGAAGCTCCGTTTTCTTTCTTCTCCGCCGCAGCTGTGGACACCCA
ACGAAAATCTTGGGGCGTGGGAACTCTCGTTTTCAAGCGTTAGAGCGCGC
GAGAAAAGAGACCCGAACAAACAGCGAGAGAGAGAGAGAGACAGACAGAC
AGACAGAGAGGGAGACAAGACAGCGTGCGTCGGCACAGCGATACACCAGA
GAGGCAGCGACAGAGAGAGAGAGAGGCAGCGAAAGGGAGAGAGAGGGAGA
GAGAGGGAGAGAGACGCGGTGCATAAGCGAGATCTTTGGGAGAGAAAAAA
TCGGCCATAAACAAACACTACTATGTCGGCGCGACATCGTGCTGGAGGCG
CTATTCCACCGGACACTCCAACTCCATCAGTGAGCAAACTCGGGTTTGAT
CTTTTTGGCTCCATGATAACTCTCGACTCTCACACGACGATACTGCTGTT
CAAGGAGAGAAAGCAACTTTTACCGTGCGCAGGGATCCCCCTTGTGCAGA
CAGGGATCAAATCAACCAGATCACACACACACAACACCGCAAGCTGTGTG
TAGCCACGCGCGGTGTTCAGTGTATGCTACGACGCACTCATGGAGAGATT
GATCGTGTCTTCTTGGGAAAGAGCGTCTCACACGATCCGCATACACATGC
TATAGACTAATTATACTTCGAAGTATAATACGGAGTATGATACAGCAGCA
GTTCTGTAATGCTGCTGTACCACATGCCACACTGCTGTATGATATACGAA
ATACGATGCACCGGTGCGCGGGCGTTACATTCTCCCGCCTAGAGGGTTGG
CGCACATCACATCTGATGATATGATATGACTGATGATACAGACACCGAAG
TTTTGTGTGTAATACTTCTGAATTATACCATGTCATACCAGGTACAGCAG
GTTATACTGCTGGTGCACTTCTTGTGTGCAATTTGTAGAGTACACATCCT
GTAGCTGCTGTATAGTACGAGCTCTGTATCATATCGATATTTTCATGATA
CTGGCACGTGATGTCTCGTGCACAGCAGCATGATAGAGCCCCTCCTCGCT
CTGCTGGCTCTGCTGATGCACCCCGTTGTGCCATCGAGATTTGCATGTGC
TTTCCTCGTTCTCGTGAACCCCGGTCAGATGGAAGTGCGCGACAGCATGA
CTAAAACTCCCCTCTGTTGTCTTGCTACTGGCTCGGCTGCTGTGGCGGCC
TCTTCAACTACTTAGTGCCGTACTGCTGGTGTGAACGGGGTGTATAGAGG
CGTATCCGAGATTTGGATGCGGACCTCCGACCGCAGACAGCCACAGTAGT
ATATCTGCAATATAATAGTACTTATCTCTCGATATATCGTATCATATGAT
ACTTCGTATAAACCGAGTGAAGTGGCTTGACACACGACGGCACATATTCC
CTTCGTCCTTGGGATATTATTGTGGGTGTTGCGGGTGGGTTTGCGCTGAT
TTTGAAACCTTTGTTTATACTTGTACGGATCGCATCATATGGTACCTGGT
AACTGCTGCTGTTCGACGGCAGTTCTGCATCATACCTGGTACCTGCTGAG
TACGACGGCAACATCAAACGACAACAGCAGTGCATTACTCGCACAGCAGA
GTGTGTGTGTGTGTTGCCATCCCATGTATTATTCTGGCCGCCAGTCTACA
CCTTTCTTTAAGGTTAGGCGCACCAGTTGGGGTCACGACAGGAACGCCAA
CGTAGGAGTGATTTTATTTCATTTGTACATACCATGCGTGAATCACGCTT
CGAAAATCATACCGTCGTGGTCATTCGCAAATACAATATCATACCGTATG
GGTTAGTGCTTGGAGTATGTGCTGTGTCACTTTTCGTATGAGTATCAGGT
ACCGCATGTGTCTTCTCCATGTACATACCTGGTTCTTGGTGTGCCGGTGC
TCAGCTTTCTTCGTGTGGCTGTTGTGGTGGTGGTCTACCATCTACCATGT
ACGGTACTGCGGTATTGTTGGTGCTGCTGCTGTGCGTAATGCCATCTGCA
CCTTCACCTCTAGTCTTGTTGTTCGTTCTGAAGCATGTGGGCATGTACAG
CCGCAGCTTGGGGACGGTTTTTCGTGCTGACTCTGGCCCGAGGTATGTGA
GGGACGGGTGTGCCAAAAAGCTTCGATATTTGTTTTACACACATGGCAAC
ACAGCGTGAATGCACAAAGCTCAGATCACGATTTTTCTATAATCACGAGC
TTCGGTCTCCGGCGCGGAAAAAATAAATAAAATGTATGATATTACACTTT
TGAGACTACAAAATGTACATACTATACGTGCCTGAATATGCCAACGTTAC
GGTATGTAGCTGGTGACCTAAAATACCACCCCGCGCTTCTTTCGCGCGCG
CCTGAACCACCCCTCTTTGCCTTCGTGTCCGGCATTTTACACAATGTTTT
TCCATCCTCTCTTTGTTCTTCCTCCCCAGAACGGCGGCGGTCTTCCGGGA
GCACCAACCCCCGTTATTCCGGGGCCCTCTCCGAAGCTAGTGGATCCTCT
CGGCAATATCCACGCCGGAGCCGCCTCCCCCGCGATTATCCAAGCTGCAC
CTGGCGCAGCCCCCTCTCCGCTGGCGCCGCTCCCACCGCGAGTCCTTCCG
ACTTCGCGGCCAGCGGAACAGCGGCAGCAGCAGCAGCAGCAACAACAACA
GGCACCCGCCCCTTCGCACGGCCCTCCTGAAGCGACGATGGCAGCGGCGA
TGCCTCCAGCAGCAGAACCAGCAGCACATGTCGCCGCTACGACCACCATC
CCTTCCACCTTGCCGGGCATTGGCGGTGGCGGCGCCCCCCCTCCTCCTTC
TGCTCCTCCTCCGACCACCATCCCTTCCACCTTGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig203:305632..308568+

>mRNA_P-littoralis_Contig203.78.1 ID=mRNA_P-littoralis_Contig203.78.1|Name=mRNA_P-littoralis_Contig203.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=540bp|location=Sequence derived from alignment at P-littoralis_Contig203:305632..308568+ (Pylaiella littoralis U1_48)
CCTCATCCAGCTTTCCCGATCATCGTCGTGCTCCGACATCGTATATTCTT
CATCAGTTCTTCTGGCCCTAAATCTACCGAAGCTTCGAAGGGCCGCGGCC
GTGACGGAAGCTCCGTTTTCTTTCTTCTCCGCCGCAGCTGTGGACACCCA
ACGAAAATCTTGGGGCGTGGGAACTCTCGTTTTCAAGCGTTAGAGCGCGC
GAGAAAAGAGACCCGAACAAACAGCGAGAGAGAGAGAGAGACAGACAGAC
AGACAGAGAGGGAGACAAGACAGCGTGCGTCGGCACAGCGATACACCAGA
GAGGCAGCGACAGAGAGAGAGAGAGGCAGCGAAAGGGAGAGAGAGGGAGA
GAGAGGGAGAGAGACGCGGTGCATAAGCGAGATCTTTGGGAGAGAAAAAA
TCGGCCATAAACAAACACTACTATGTCGGCGCGACATCGTGCTGGAGGCG
CTATTCCACCGGACACTCCAACTCCATCAAACGGCGGCGGTCTTCCGGGA
GCACCAACCCCCGTTATTCCGGGGCCCTCTCCGAAGCTAG
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