prot_P-littoralis_Contig202.76.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig202.76.2
Unique Nameprot_P-littoralis_Contig202.76.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length662
Homology
BLAST of mRNA_P-littoralis_Contig202.76.2 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 8.310e-106
Identity = 292/721 (40.50%), Postives = 344/721 (47.71%), Query Frame = 0
Query:    1 MEEPRTSLWSRLVLFYSISNRDQLNAKVMAEIVAKYGLKEKELSARLLKKYGRPLSPSVPSQELQRVLADFGMEDQDLIAAGAXXXXXXXXXXXXXXXXXXXXXAMGSSGSIGVTRQEEPAAATAREEHGQEGHTEGVRERPPTANELNFRSKFFDPLKALRHKKARPPFPREPALDNLNKFRRLLPRPRVXXXXXXXXXXXXXXAAA--------VRDAAEGHDGAGASAAALSTATTPRSSGSAAXXXXXXXXXXXXXGIGSPRAGERPASRETAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAGGSVGGHYGPFAGSAAEIDRMDKEMASKRRSAELLLAG-GEAP----AEERISPVQRIMREYAGVGPYRLLYRLFEEKRRASVMIRRVNSIRGTCTGLIRAFDRHMNMLLVDVREDYTAFVPDRDPKPDSK---PXXXXXXXXXXXXPPVLSPSGGDAGLD---------------------------------------VNEEKQAGQNLPTGVKKDTSSA--TTXXXXXXXXXXXXXSSGXXXXXXXXXXXXXXXXXXXXXXXXXXSSVEGKSLADPREGGGRSEAEXXXXXXXXXKKVEGKDTGYTSGATLRMHTDRGDESREQSSSRRSEGSTQPEGFHGI-------RGGVEEAGASATPDKSKKSTRRSRGKGPWTGELTPVRRRRFLKQLLIRGDNVVMIWECPR 657
            M EPRTSLWSRLV+FYS++ RDQLNAKVMAEIVAKYG KEKELSARLLKKY RPL PSV SQ+L+RVL +FGMED+DL  A                       A G+          EP   TAR+   + G  EG     P  +ELNFRSKFFDPL+AL HK  RPPFP+EPALDNL KF R+LP+P            XXXX             D+  G D  GA          PRS G+                 GSPR   +  +RET W                               GG V   Y P   SAA+++R DK+MAS+RR AE  LAG  EA     AEER +PV+RI++EYAG GPY LLYRL EE RRASVMIRRVNSIRGTCTGLIRAFDRHMN+LLVDVRE+YTAFVP R P+P  K   P                S   G  GL                                         ++EK  G +   G ++  ++A   T              +G                          ++ E     + REGG R+             K+  ++ G T     +  T R  ++ EQ    R      P G  G        RGG       A   + KKSTRRSR KGPWTGE  PV RRR+LKQLLIRGDNVVMIWE P+
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDL--ARGKPSDPDRRASPLSPTGAMSTAAAGAGXXXXXXAGREP---TARDNE-KLGRGEGAGS-SPKGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAG---------PRSGGAGVIPPPNA--------AGSPRGSHQ--ARET-WPTS---------------------------GGGRV--RYSPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKQPSPKPAEEEDPIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXXXXXLGKVTGXXXXXXAADDEKFVGISPADGSEQRAATAWSVTGTGGFKGGRIRGEVAGDAGGRSERIDPRDRRMPVAAVAAASGAATEEACSDETREGGARTATRT---------KLLPQEWGVTPEREEKDPTRRTPDAEEQ----RPRPPLPPAGRQGGDVNRGEGRGGGATGEIPAAEVRKKKSTRRSRSKGPWTGERKPVARRRYLKQLLIRGDNVVMIWEAPK 652          
BLAST of mRNA_P-littoralis_Contig202.76.2 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 341 bits (874), Expect = 1.190e-104
Identity = 290/729 (39.78%), Postives = 339/729 (46.50%), Query Frame = 0
Query:    1 MEEPRTSLWSRLVLFYSISNRDQLNAKVMAEIVAKYGLKEKELSARLLKKYGRPLSPSVPSQELQRVLADFGMEDQDLIAAGAXXXXXXXXXXXXXXXXXXXXXAMGSSGSIGVTRQEEPAAATAREEHGQEGHTEGVRERPPTANELNFRSKFFDPLKALRHKKARPPFPREPALDNLNKFRRLLPRPRVXXXXXXXXXXXXXXA---------------AAVRDAAEGHDGAGASAAALSTATTPRSSGSAAXXXXXXXXXXXXXGIGSPRAGERPASRETAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAGGSVGGHYGPFAGSAAEIDRMDKEMASKRRSAELLLAGGEA--PAEE--RISPVQRIMREYAGVGPYRLLYRLFEEKRRASVMIRRVNSIRGTCTGLIRAFDRHMNMLLVDVREDYTAFVPDRDPKPDSK--PXXXXXXXXXXXXPPVLSPSGGDAGLD---------------------------------------VNEEKQAGQNLPTGVKKDTSSA--TTXXXXXXXXXXXXXSSGXXXXXXXXXXXXXXXXXXXXXXXXXXSSVEGKSLADPREGGGRSEAEXXXXXXXXX---KKVEGKDTGYTSGATLRMHTDRGDESREQSSSRRSEGSTQPEGFHG---IRGGVEEAGAS----ATPDKSKKSTRRSRGKGPWTGELTPVRRRRFLKQLLIRGDNVVMIWECPR 657
            M EPRTSLWSRLV+FYS++ RDQLN KVMAEIVAKYG KEKELSARLLKKYGRPL  SV SQ+L+RVL +FGMED+DL A G                      A   S   GV  +E    A ARE   + G  EG     PT +ELNFRSKFFDPL+AL HK  RPPFPREPALDNL KF R+LP+P           XXXXX                + V     GH G GA       A                         GSPR   +  +R+T W                              A G   G +G    SAA+++R DK+MA +RR AE  LAG     PA+   R +PV+RI++EYAG GPY LLYRL EE RRASVMIRRVNSIRGTCTGLIRAFDRHMN+LLVDVRE+YTAFVP R P+P  K  P                S   G  GL                                         +++K  G +   G +   ++A   T               G                          ++ E     + REGG R+               ++ E   TG T  A                  +R        G HG    RGG  E GA+    A   + KKSTRRSR KGPWTGEL PV RRR+LKQLLIRGDNVVMIWE P+
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDL-ARGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGRE----AAARENK-ELGRGEGAGS-SPTGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAA------------------------GSPRGSHQ--ARKT-WP-----------------------------ASGGGRGRHGLLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSAGRFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPPPKPAEEDPIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXGPEGLGKVTAGAGXAGAADDDKSVGVSPADGSEPTGATAWTVTGTGGFKGGRISGEDGGDGGGSSERIYPRDPRMDVAAAAAASGAATEEACSDETREGGARTATRMKLLPQEWGVPREREENDPTGRTPDAE----------------EKRPRPPLSTAGRHGGDVNRGGGGEGGATGEIPAAEVRKKKSTRRSRSKGPWTGELKPVARRRYLKQLLIRGDNVVMIWEAPK 650          
BLAST of mRNA_P-littoralis_Contig202.76.2 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.480e-10
Identity = 29/53 (54.72%), Postives = 44/53 (83.02%), Query Frame = 0
Query:  361 VGPYRLLYRLFEEKRRASVMIRRVNSIRGTCTGLIRAFDRHMNMLLVDVREDY 413
            +GP+ +L R F E+ R  V++RRVNS+RGTCTG ++AFD+HMN++L+DV ++Y
Sbjct:   83 LGPFMVLRRCFLERTRVLVVVRRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEY 135          
BLAST of mRNA_P-littoralis_Contig202.76.2 vs. uniprot
Match: A0A2P4XRX7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRX7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.490e-9
Identity = 30/55 (54.55%), Postives = 44/55 (80.00%), Query Frame = 0
Query:  362 GPYRLLYRLFEEKRRASVMIRRVNSIRGTCTGLIRAFDRHMNMLLVDVREDYTAF 416
            GP+R+L R F E+ R  V++RRVNS+RGTC+G ++AFD+HMN++L+DV  D+  F
Sbjct:  187 GPFRVLRRCFLERTRVFVVVRRVNSVRGTCSGFLKAFDKHMNLVLLDVTHDFIPF 241          
BLAST of mRNA_P-littoralis_Contig202.76.2 vs. uniprot
Match: A0A3F2RTL9_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTL9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.690e-9
Identity = 29/52 (55.77%), Postives = 44/52 (84.62%), Query Frame = 0
Query:  362 GPYRLLYRLFEEKRRASVMIRRVNSIRGTCTGLIRAFDRHMNMLLVDVREDY 413
            GP+R+L R F E+ R  V++RRVNS+RGTC+G ++AFD+HMN++L+DV ++Y
Sbjct:  185 GPFRVLRRCFLERMRVLVVVRRVNSVRGTCSGFLKAFDKHMNLVLMDVSQEY 236          
BLAST of mRNA_P-littoralis_Contig202.76.2 vs. uniprot
Match: V9F378_PHYPR (Sm domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F378_PHYPR)

HSP 1 Score: 70.5 bits (171), Expect = 1.960e-9
Identity = 30/52 (57.69%), Postives = 44/52 (84.62%), Query Frame = 0
Query:  362 GPYRLLYRLFEEKRRASVMIRRVNSIRGTCTGLIRAFDRHMNMLLVDVREDY 413
            GP+R+L R F E+ R  V+IRRVNS+RGTC+G ++AFD+HMN++L+DV +D+
Sbjct:  183 GPFRVLRRCFLERMRVFVVIRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQDF 234          
BLAST of mRNA_P-littoralis_Contig202.76.2 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.100e-9
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 0
Query:  338 AGGEAPAEERISPVQRIMREYAGV---GPYRLLYRLFEEKRRASVMIRRVNSIRGTCTGLIRAFDRHMNMLLVDVREDY 413
            A  +A A +R   V  +    A     GP+ +L R F E+RR  V++RRVNSIRGTC G ++AFD+HMN++L+DV E Y
Sbjct:  165 ASSKAAAAKRNDAVPTLFERLADTYMDGPFTVLRRCFLERRRVVVVVRRVNSIRGTCAGYLKAFDKHMNLVLLDVDERY 243          
BLAST of mRNA_P-littoralis_Contig202.76.2 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.550e-9
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 0
Query:  360 GVGPYRLLYRLFEEKRRASVMIRRVNSIRGTCTGLIRAFDRHMNMLLVDVREDYT 414
            G GP   L R++ E RR  VMIR VNS+RG C GL++AFD+H NM++VDV E YT
Sbjct:  218 GTGPMSFLGRMWRENRRVCVMIRYVNSVRGVCAGLLKAFDKHFNMVIVDVTERYT 272          
BLAST of mRNA_P-littoralis_Contig202.76.2 vs. uniprot
Match: G4ZDB3_PHYSP (Sm domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZDB3_PHYSP)

HSP 1 Score: 68.6 bits (166), Expect = 6.050e-9
Identity = 28/52 (53.85%), Postives = 44/52 (84.62%), Query Frame = 0
Query:  362 GPYRLLYRLFEEKRRASVMIRRVNSIRGTCTGLIRAFDRHMNMLLVDVREDY 413
            GP+R+L R F E+ R  V++RRVNS+RGTC+G ++AFD+HMN++L+DV +++
Sbjct:  173 GPFRVLRRCFLERMRVFVVVRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQEF 224          
BLAST of mRNA_P-littoralis_Contig202.76.2 vs. uniprot
Match: D0MT91_PHYIT (Sm domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT91_PHYIT)

HSP 1 Score: 68.6 bits (166), Expect = 7.320e-9
Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = 0
Query:  362 GPYRLLYRLFEEKRRASVMIRRVNSIRGTCTGLIRAFDRHMNMLLVDVREDY 413
            GP+R+L   F E+ R  V+IRRVNS+RGTC+G ++AFD+HMN++L+DV +D+
Sbjct:  168 GPFRVLRHCFLERMRVFVVIRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQDF 219          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig202.76.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0V3_ECTSI8.310e-10640.50Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
A0A6H5LBR8_9PHAE1.190e-10439.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A662WXN3_9STRA9.480e-1054.72Sm domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A2P4XRX7_9STRA1.490e-954.55Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A3F2RTL9_9STRA1.690e-955.77Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
V9F378_PHYPR1.960e-957.69Sm domain-containing protein n=9 Tax=Phytophthora ... [more]
A0A5D6YBS7_9STRA3.100e-946.84Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A836CP56_9STRA4.550e-958.18Sm domain-containing protein n=1 Tax=Tribonema min... [more]
G4ZDB3_PHYSP6.050e-953.85Sm domain-containing protein (Fragment) n=1 Tax=Ph... [more]
D0MT91_PHYIT7.320e-955.77Sm domain-containing protein n=2 Tax=Phytophthora ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 342..462
e-value: 9.8E-12
score: 46.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 460..490
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..290
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 417..432
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 417..635
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 568..582
IPR039267U7 snRNA-associated Sm-like protein Lsm11PANTHERPTHR21415U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11coord: 319..656
coord: 132..196
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 362..420

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig202contigP-littoralis_Contig202:387050..393712 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig202.76.2mRNA_P-littoralis_Contig202.76.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig202 386926..404428 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig202.76.2 ID=prot_P-littoralis_Contig202.76.2|Name=mRNA_P-littoralis_Contig202.76.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=662bp
MEEPRTSLWSRLVLFYSISNRDQLNAKVMAEIVAKYGLKEKELSARLLKK
YGRPLSPSVPSQELQRVLADFGMEDQDLIAAGAGGAGPATAAAAAAPAPA
AATAAMGSSGSIGVTRQEEPAAATAREEHGQEGHTEGVRERPPTANELNF
RSKFFDPLKALRHKKARPPFPREPALDNLNKFRRLLPRPRVAAATAGTGT
GTAIGAAAVRDAAEGHDGAGASAAALSTATTPRSSGSAATGATGTASGSA
ASGIGSPRAGERPASRETAWATSGASDTIAGARKPGSGFSSSAEGPVKKY
AGGSVGGHYGPFAGSAAEIDRMDKEMASKRRSAELLLAGGEAPAEERISP
VQRIMREYAGVGPYRLLYRLFEEKRRASVMIRRVNSIRGTCTGLIRAFDR
HMNMLLVDVREDYTAFVPDRDPKPDSKPRPNRDRPAPLPLPPVLSPSGGD
AGLDVNEEKQAGQNLPTGVKKDTSSATTAQQGTSGGWGGGGSSGGSWGGG
GSVNWGTGGGGGGAGGTGGSSSVEGKSLADPREGGGRSEAEGGGGSGGGG
KKVEGKDTGYTSGATLRMHTDRGDESREQSSSRRSEGSTQPEGFHGIRGG
VEEAGASATPDKSKKSTRRSRGKGPWTGELTPVRRRRFLKQLLIRGDNVV
MIWECPRPKRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039267Lsm11
IPR010920LSM_dom_sf