prot_P-littoralis_Contig202.45.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig202.45.2
Unique Name	prot_P-littoralis_Contig202.45.2
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	141

Homology

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BLAST of mRNA_P-littoralis_Contig202.45.2 vs. uniprot
Match: D7G0W6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W6_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 4.570e-74
Identity = 119/129 (92.25%), Postives = 121/129 (93.80%), Query Frame = 0

Query:   12 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKGAVDHLSGFNVCGRYLIVLYYQARALCPAKMAKRMDQQAKKKELEDLRAKLKVAKEEDAAGGDAPASK 140
            MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAK AVDHLSGFNVCGRYLIVLYYQ     PAKMAKRMDQQAKKKELE+LRAKLKVA+EEDAAG D PASK
Sbjct:    1 MRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKAAVDHLSGFNVCGRYLIVLYYQ-----PAKMAKRMDQQAKKKELEELRAKLKVAREEDAAG-DTPASK 123

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BLAST of mRNA_P-littoralis_Contig202.45.2 vs. uniprot
Match: A0A6S9GFW4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GFW4_HETAK)

HSP 1 Score: 180 bits (457), Expect = 3.290e-56
Identity = 91/130 (70.00%), Postives = 110/130 (84.62%), Query Frame = 0

Query:    1 MDGQRDRDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKGAVDHLSGFNVCGRYLIVLYYQARALCPAKMAKRMDQQAKKKELEDLRAKLKVAKEED 130
            MD Q++R R   RLPPEVNR +YVRNLPFKI+A+EMYDIFGKYGAIRQIR+GD+ DT+GTAFVVY+DIYDAK AVDHLSGFNVCGRYLIVLYYQ     P +MAK+MDQ+ +++ELE+L+AK    ++ D
Sbjct:    1 MDPQQNR-RANARLPPEVNRVLYVRNLPFKITAEEMYDIFGKYGAIRQIRIGDKPDTKGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQ-----PTRMAKKMDQERERRELEELKAKYLAERQND 124

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BLAST of mRNA_P-littoralis_Contig202.45.2 vs. uniprot
Match: A0A7S2C985_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C985_9STRA)

HSP 1 Score: 177 bits (449), Expect = 5.790e-55
Identity = 87/117 (74.36%), Postives = 102/117 (87.18%), Query Frame = 0

Query:   13 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKGAVDHLSGFNVCGRYLIVLYYQARALCPAKMAKRMDQQAKKKELEDLRAKLKVAKEE 129
            RLPPEVNR +Y+RNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYLIVLYYQA     A+M KR+D   K++ELE+L+AK  V+ EE
Sbjct:   12 RLPPEVNRVLYIRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQA-----ARMEKRIDNDKKRRELEELKAKFNVSGEE 123

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BLAST of mRNA_P-littoralis_Contig202.45.2 vs. uniprot
Match: A0A7S2DAY0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY0_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.710e-54
Identity = 87/119 (73.11%), Postives = 102/119 (85.71%), Query Frame = 0

Query:   13 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKGAVDHLSGFNVCGRYLIVLYYQARALCPAKMAKRMDQQAKKKELEDLRAKLKVAKEEDA 131
            RLPPEVNR +YVRNLPFKI+++EMYDIFGKYGAIRQIR+GD+ DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+VLYYQA     ++M KRMD   K+KELE+L+ K  V+ +E A
Sbjct:   14 RLPPEVNRVLYVRNLPFKITSEEMYDIFGKYGAIRQIRVGDKPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQA-----SRMQKRMDNDKKRKELEELKQKYNVSADEVA 127

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BLAST of mRNA_P-littoralis_Contig202.45.2 vs. uniprot
Match: A0A835YN30_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN30_9STRA)

HSP 1 Score: 175 bits (443), Expect = 4.450e-54
Identity = 88/120 (73.33%), Postives = 101/120 (84.17%), Query Frame = 0

Query:    9 RRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKGAVDHLSGFNVCGRYLIVLYYQARALCPAKMAKRMDQQAKKKELEDLRAKLKVAKE 128
            RR  RLPPEVNR +YVRNLPFKI+ADEMYDIFGKYGAIRQIRLGD+ DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYLIVLYYQ+      K  KR+D+  K++E+E+++AK  V  E
Sbjct:    7 RRTGRLPPEVNRILYVRNLPFKITADEMYDIFGKYGAIRQIRLGDKPDTRGTAFVVYEDIYDAKAAVDHLSGFNVCGRYLIVLYYQS-----TKALKRVDEMKKRREIEEIKAKFGVGGE 121

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BLAST of mRNA_P-littoralis_Contig202.45.2 vs. uniprot
Match: R1DMS8_EMIHU (RRM domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DMS8_EMIHU)

HSP 1 Score: 173 bits (439), Expect = 2.120e-53
Identity = 87/119 (73.11%), Postives = 101/119 (84.87%), Query Frame = 0

Query:    7 RDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKGAVDHLSGFNVCGRYLIVLYYQARALCPAKMAKRMDQQAKKKELEDLRAKLKV 125
            R R  MRLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+  DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+VLYYQ       KM KR+D + ++KEL ++RAKL +
Sbjct:    5 RARASMRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQ-----TKMQKRLDTEREQKELAEMRAKLGI 118

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BLAST of mRNA_P-littoralis_Contig202.45.2 vs. uniprot
Match: A0A7S2S8J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J7_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.120e-53
Identity = 84/116 (72.41%), Postives = 100/116 (86.21%), Query Frame = 0

Query:   13 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKGAVDHLSGFNVCGRYLIVLYYQARALCPAKMAKRMDQQAKKKELEDLRAKLKVAKE 128
            RLPPEVNR VYVRNLPFKISA+E+YDIFGKYGA+RQ+RLGD+ DTRGTAFVVY+DIYDAK AVDHL+GFNVCGRYL+VLYYQA     +KM +R+D Q K++ELE+L+ K  +  E
Sbjct:   16 RLPPEVNRVVYVRNLPFKISAEEIYDIFGKYGALRQVRLGDKPDTRGTAFVVYEDIYDAKNAVDHLNGFNVCGRYLVVLYYQA-----SKMQERIDNQRKRQELEELKKKYNIQTE 126

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BLAST of mRNA_P-littoralis_Contig202.45.2 vs. uniprot
Match: A0A7S3SDL9_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SDL9_9SPIT)

HSP 1 Score: 171 bits (432), Expect = 2.460e-52
Identity = 84/117 (71.79%), Postives = 99/117 (84.62%), Query Frame = 0

Query:    7 RDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKGAVDHLSGFNVCGRYLIVLYYQARALCPAKMAKRMDQQAKKKELEDLRAKL 123
            R R  +RLPPEVNRA+YVRNLPFKISA+EMYDIFGK+GA+RQ+RLG   DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+VLYYQ       KM KR+D + +++EL ++RAKL
Sbjct:   11 RQRATLRLPPEVNRALYVRNLPFKISAEEMYDIFGKFGALRQVRLGSAPDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQ-----TKMQKRLDTEREQRELAEMRAKL 122

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BLAST of mRNA_P-littoralis_Contig202.45.2 vs. uniprot
Match: A0A067D1A1_SAPPC (Pre-mRNA branch site p14-like protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D1A1_SAPPC)

HSP 1 Score: 170 bits (431), Expect = 2.630e-52
Identity = 85/113 (75.22%), Postives = 98/113 (86.73%), Query Frame = 0

Query:   13 RLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKGAVDHLSGFNVCGRYLIVLYYQARALCPAKMAKRMDQQAKKKELEDLRAKLKV 125
            RLPPEVNR +YVRNLPFKIS+DEMYDIFGKYGAIRQIRLG   DTRGTAFVVY+DIYDAK AVDHLSGFNVCGRYL+VLYYQA      +++K+MD QAK++EL +L+A+  V
Sbjct:   14 RLPPEVNRVLYVRNLPFKISSDEMYDIFGKYGAIRQIRLGVNADTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQAN-----RVSKKMDVQAKQQELAELKARYGV 121

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BLAST of mRNA_P-littoralis_Contig202.45.2 vs. uniprot
Match: A0A0M0JX52_9EUKA (Pre-mRNA branch site p14-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX52_9EUKA)

HSP 1 Score: 169 bits (429), Expect = 6.830e-52
Identity = 85/119 (71.43%), Postives = 100/119 (84.03%), Query Frame = 0

Query:    7 RDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIRLGDRQDTRGTAFVVYDDIYDAKGAVDHLSGFNVCGRYLIVLYYQARALCPAKMAKRMDQQAKKKELEDLRAKLKV 125
            R R+ +RLPPEVNRA+YVRNLPFKI+A+EMYDIFGK+GAIRQIRLG+  DTRGTAFVVY+DI+DAK AVDHLSGFNVCGRYL+VLYYQ       KM KR D + + KEL ++RAKL +
Sbjct:    4 RQRQQLRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNAADTRGTAFVVYEDIFDAKTAVDHLSGFNVCGRYLVVLYYQQ-----TKMQKRQDTEREMKELAEMRAKLGI 117

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig202.45.2 vs. uniprot

BLAST of mRNA_P-littoralis_Contig202.45.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G0W6_ECTSI	4.570e-74	92.25	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6S9GFW4_HETAK	3.290e-56	70.00	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S2C985_9STRA	5.790e-55	74.36	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S2DAY0_9STRA	1.710e-54	73.11	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A835YN30_9STRA	4.450e-54	73.33	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
R1DMS8_EMIHU	2.120e-53	73.11	RRM domain-containing protein n=1 Tax=Emiliania hu...	[more]
A0A7S2S8J7_9STRA	2.120e-53	72.41	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S3SDL9_9SPIT	2.460e-52	71.79	Hypothetical protein n=1 Tax=Strombidinopsis acumi...	[more]
A0A067D1A1_SAPPC	2.630e-52	75.22	Pre-mRNA branch site p14-like protein n=4 Tax=Sapr...	[more]
A0A0M0JX52_9EUKA	6.830e-52	71.43	Pre-mRNA branch site p14-like protein n=1 Tax=Chry...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 106..129
None	No IPR available	PANTHER	PTHR12785:SF7	SPLICING FACTOR 3B SUBUNIT 6	coord: 8..122
None	No IPR available	PANTHER	PTHR12785	SPLICING FACTOR 3B	coord: 8..122
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 21..91 e-value: 9.7E-14 score: 61.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 22..88 e-value: 2.9E-14 score: 52.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 20..95 score: 15.527974
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 16..124 e-value: 1.2E-19 score: 72.2
IPR034150	SF3B6, RNA recognition motif	CDD	cd12241	RRM_SF3B14	coord: 18..94 e-value: 7.61654E-53 score: 159.704
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 19..99

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig202	contig	P-littoralis_Contig202:175838..188135 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig202.45.2	mRNA_P-littoralis_Contig202.45.2	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig202 175678..189009 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig202.45.2 ID=prot_P-littoralis_Contig202.45.2|Name=mRNA_P-littoralis_Contig202.45.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MDGQRDRDRRPMRLPPEVNRAVYVRNLPFKISADEMYDIFGKYGAIRQIR
LGDRQDTRGTAFVVYDDIYDAKGAVDHLSGFNVCGRYLIVLYYQARALCP
AKMAKRMDQQAKKKELEDLRAKLKVAKEEDAAGGDAPASK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR034150	SF3B6_RRM
IPR035979	RBD_domain_sf