mRNA_P-littoralis_Contig200.84.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig200.84.1 vs. uniprot
Match: D7FPF9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF9_ECTSI) HSP 1 Score: 313 bits (801), Expect = 2.590e-93 Identity = 295/671 (43.96%), Postives = 330/671 (49.18%), Query Frame = 1
Query: 1 TVELRKSCDYCVKLKRACDGKNPCSLCSRRHKPCTRSARKKSGPAKGTKYAPRRKRSIIAEWADRATHGPREPMLPHAFLGGGGIGDSGGLGGSSRDGSSRGMGGGGGPFDRYHLPMSAAEEAAARTATAGRXXXXXXXXXSGRPSQQSHPGTGAAPTGSRRFGGEVPQPWTEDRSAAEQGR----------RLSASSSSGLPFPMAWY--GSEGYEAPEAGGVGRXXXXXXXXGARDHRHLAPHLESPMGYAPTTAEALSRRAQQQHAPLPRDAWSASPLNAEGVA-------GER--IAAGMEPSRRRTWEPPSSGGWASQPDPLL-TPQAEGMALTYGRRVRLSPPFLPS----------------RPLMRPGGESSYGAAGPSFREREAAGRPAERHGEIDPASSLPFFPPPREPADPTAGFSFHQAPNRASWRRQSYMAPWES--PGGXXXXXXXXRNDPGVPQQYP-QQPTFYDSSERPPSSXXXXXXXXXXXXYM---RGRRYYDDFRGDLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVDAFRERERLEVP---SFSRHHHQTMGRFRVGGGEEERGA-EMPPGPPSPAAGAAARDGLDQQPHQMFARGGADS-AYERAVGHTSWPSGGG--------GGADHIDVQYQRGRQEAMRQEW 1842
T+ELRKSCDYCV+LKRACDGKNPCSLC+RRHKPCTRSARKKSGPAKGTKYAPRRKRS+IAEWADR T G R P+LPH F GGG GGGG + P++ + A R A GR XXXX RFG E W E QGR S S SSGLPFP WY G +E E G R G R AP PMGYAPTTAE LSRR QQ+H R ++S S L G R + A EP RRRT E P G WAS DP L +PQ AL G+RVRLSPP L S R +MRPG + Y + S R RE AGRP ER E+DP SSL PPPREP DPTAGFSFH A NR SWRR S WES PGG RNDP QYP QQ ++SS+RP XXXXXXXXXXXX RG D + + XXXXXX D + ER L P F RH + R +GGG + G +M G PSP RD Q +A GAD AYE G W GGG G DH D + ++ R E RQ+W
Sbjct: 15 TIELRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKRSVIAEWADR-TSGARGPLLPHEFPGGG-------------------TRGGGGQLPHHDFPLAPIDAAGMRAA--GRAYYSGXXXX----XXXXXXXXXXXXXXXGRFGAEAL--WEEGGPLPGQGRGRRPGEEGHPSSSLSPSSGLPFP--WYAPGPSPHEETEGRGGERG-------GVGGGRGFAP---PPMGYAPTTAEELSRR-QQEHGYHHRASYSMSSLEXXXXXXXXXXXXGRRPGVPAAPEPYRRRTLELPP-GHWASPSDPFLRSPQQGEAALAQGKRVRLSPPTLGSGAAXXXXXXXXXXXXXRSVMRPGADY-YPSPATSPRAREMAGRPHERPRELDPESSLLSLPPPREPPDPTAGFSFHPAANRPSWRRGST---WESGSPGGGGDGRPVDRNDPRAYHQYPPQQLGSFESSDRPXXXXXXXXXXXXXXXXXXXXRGASLGDRRYRNFDREAGEDGQGRGRSVVEWPLPHGXXXXXXXXXDPYHERVELPPPPPHGFDRH--LPLERPLMGGGRQGEGRHDMLLGAPSPP-----RD------EQGYAARGADGGAYEHPSGRARWAGGGGDQVGLPGRGSRDHRDYEQEQQRVERGRQDW 626
BLAST of mRNA_P-littoralis_Contig200.84.1 vs. uniprot
Match: A0A6H5L009_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L009_9PHAE) HSP 1 Score: 288 bits (736), Expect = 6.560e-84 Identity = 275/671 (40.98%), Postives = 310/671 (46.20%), Query Frame = 1
Query: 1 TVELRKSCDYCVKLKRACDGKNPCSLCSRRHKPCTRSARKKSGPAKGTKYAPRRKRSIIAEWADRATHGPREPMLPHAFLGGGGIGDSGGLGGSSRDGSSRGMGGGGGPFDRYHLPMS----AAEEAAARTATAGRXXXXXXXXXSGRPSQQSHPGTGAAPTGSRRFGGEV------PQPWT-EDRSAAEQGRRLSA-SSSSGLPFPMAWYGSEGYEAPEAGGVGRXXXXXXXXGARDHRHLAPHLESPMGYAPTTAEALSRRAQQ---QHAPLPRDAWSASPLNAEGV----AGERIAAGM--EPSRRRTWEPPSSGGWASQPDPLL-TPQAEGMALTYGRRVRLSPPFLPS----------RPLMRPGGESSYGAAGPSFREREAAGRPAERHGEIDPASSLPFFPPPREPADPTAGFSFHQAPNRASWRRQSYMAPWESPGGXXXXXXXXRNDPGVPQQYPQ-QPTFYDSSERPPSSXXXXXXXXXXXXY-----------MRGRRYYDDFRGDLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVDAFRERERLEVPSFSRHHHQTMGRFRVGGGEEERGAEM----PPGPPSPAAGAAARDGLDQQPHQMFARGGADS-AYERAVGHTSWPSGGG--------GGADHIDVQYQRGRQEAMRQEW 1842
TVELRKSCDYCV+LKRACDGKNPCSLC+RRHKPCTRSARKKSGPAKGTKYAPRRKRS+IAEWADR T G P LPH F GGG GGGG + ++ A AA RT +G G S G R FG E P+P R E+G S SS GLPFP WY S EA G G G GYAPTTAE LS H R ++S S L AE AG R A EP RRRT E P G WAS DP L +PQ AL G+RVRLSPP S RP+MRPG + Y + S R E AGRP ER E+DP SS+ PPPREP DPTAGFSFH A NR SWRR S GG RNDP QYP Q ++SS+R PSS XXXXX + G R Y +F + E XXXXXXXX D + E+ L P H + R +GGG + G P PP G AAR G+ GGAD AYE G W GGG G DH D + ++ + E RQ+W
Sbjct: 7 TVELRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKRSVIAEWADR-TGGAGGPPLPHEFQGGG-------------------TSGGGGQLPHHDFSLAPFDAAGMRAAERTYNSG-----------GGLSAHXXXXXXXXXXGGR-FGAEALWEEGAPRPGQGRGRWPGEEGHPSSLLPSSPGLPFP--WYASRPSPHGEAEGRG------GERGXXXXXXXXXXXXXXXGYAPTTAEELSXXXXXXGYHH----RASYSMSFLEAEXXXXXXAGRRPGAPAMREPYRRRTPELPP-GHWASPSDPFLRSPQQGEAALAQGKRVRLSPPTFGSGAAGGSGGGSRPVMRPGADY-YPSPATSPRASEMAGRPHERPRELDPESSVLSLPPPREPPDPTAGFSFHPAANRPSWRRGSTWESGSPGGGGGDGRPVDRNDPRAYHQYPPPQLGSFESSDRAPSSSSWSSPGXXXXXXXXXXXXGRGASLGGDRRYRNFDREAGEDGQGRGRGVVEWPLPHGXXXXXXXX----XDPYHEQVELPPPPHGFDRHLPLERPLMGGGRQGEGKHDMLLGAPSPPRDKQGYAARGGVG---------GGADGGAYEYPSGRPRWAGGGGDQMGLPGRGSRDHRDFEQEQQQVERGRQDW 618
BLAST of mRNA_P-littoralis_Contig200.84.1 vs. uniprot
Match: D8LPZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ9_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 7.670e-14 Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 4 VELRKSCDYCVKLKRACDGKNPCSLCSRRHKPCTRSARKKSGPAKGTKYAPRRKR 168
V LRKSCD CV+LKRACDGKNPC LC RR + CTRS ++KSGPAKGTKY RR R
Sbjct: 60 VLLRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRSR 114
BLAST of mRNA_P-littoralis_Contig200.84.1 vs. uniprot
Match: A0A6H5L7F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F3_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 8.170e-13 Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 4 VELRKSCDYCVKLKRACDGKNPCSLCSRRHKPCTRSARKKSGPAKGTKYAPRRKR 168
V LRKSCD CV+LKRACDG++PC LC RR + CTRS ++KSGPAKGTKY RR R
Sbjct: 32 VLLRKSCDLCVRLKRACDGQSPCQLCLRRRETCTRSVKRKSGPAKGTKYTTRRVR 86
BLAST of mRNA_P-littoralis_Contig200.84.1 vs. uniprot
Match: D8LKM5_ECTSI (Zinc finger transcriptional regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM5_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 3.330e-12 Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 1
Query: 10 LRKSCDYCVKLKRACDGKNPCSLCSRRHKPCTRSARKKSGPAKGTKYAPRRKRSI 174
LRKSCDYCV++KR C G PC+LC+RR+K C RS +K+SGPAKGTKY R+ R I
Sbjct: 23 LRKSCDYCVRMKRGCSGGTPCALCNRRNKNCIRSIKKRSGPAKGTKYCKRKPRKI 77
BLAST of mRNA_P-littoralis_Contig200.84.1 vs. uniprot
Match: A0A6H5JII0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII0_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 4.090e-7 Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1
Query: 40 LKRACDGKNPCSLCSRRHKPCTRSARKKSGPAKGTKYAPRRKR 168
+KRACDG +PC+LCSRR K C R R+KSGPAKG KYAPRR++
Sbjct: 1 MKRACDGGSPCALCSRRGKVCERRLRRKSGPAKGAKYAPRRRK 43
BLAST of mRNA_P-littoralis_Contig200.84.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 2.010e-5 Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 1
Query: 4 VELRKSCDYCVKLKRACDGKNPCSLCSRRHKPCTRSARKKSGPAKGTKYAPRRKRSIIAEWADRATHGPREPML 225
V LR +CD C ++KR CDG PC+ C RR +PC S ++KSGP KG+K R +IA D + P L
Sbjct: 205 VVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSK------RKLIAADEDLLENRQSRPKL 272
BLAST of mRNA_P-littoralis_Contig200.84.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 2.220e-5 Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 1
Query: 4 VELRKSCDYCVKLKRACDGKNPCSLCSRRHKPCTRSARKKSGPAKGTKYAPRRKRSIIAEWADRATHGPREPML 225
V LR +CD C ++KR CDG PC+ C RR +PC S ++KSGP KG+K R +IA D + P L
Sbjct: 181 VVLRSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSGPPKGSK------RKLIAADEDLLENRQSRPKL 248 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig200.84.1 >prot_P-littoralis_Contig200.84.1 ID=prot_P-littoralis_Contig200.84.1|Name=mRNA_P-littoralis_Contig200.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=633bp TVELRKSCDYCVKLKRACDGKNPCSLCSRRHKPCTRSARKKSGPAKGTKYback to top mRNA from alignment at P-littoralis_Contig200:264733..267094- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig200.84.1 ID=mRNA_P-littoralis_Contig200.84.1|Name=mRNA_P-littoralis_Contig200.84.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2362bp|location=Sequence derived from alignment at P-littoralis_Contig200:264733..267094- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig200:264733..267094- >mRNA_P-littoralis_Contig200.84.1 ID=mRNA_P-littoralis_Contig200.84.1|Name=mRNA_P-littoralis_Contig200.84.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1899bp|location=Sequence derived from alignment at P-littoralis_Contig200:264733..267094- (Pylaiella littoralis U1_48)back to top |