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Homology
BLAST of mRNA_P-littoralis_Contig20.117.1 vs. uniprot
Match: D8LJN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJN3_ECTSI) HSP 1 Score: 182 bits (463), Expect = 1.820e-48 Identity = 160/490 (32.65%), Postives = 201/490 (41.02%), Query Frame = 1
Query: 379 MYNNYHADLDPALAKLRDSLHQCSIDRTGWATVTAMSAVLELAGVSLNDSTILLLANR--LDDPRDPTGPMQEHFQRDATAAVSKTR--LVHWPTIVDFLEEYPFADAKNGATMPVCKSESLVSKTFPSRSFQSARKPQTDGEPAVPMKTDKAVSPSAAEDAQQGGHNPEVTPESNVGESGGKLETDGGHSRRSINDLSCGGIMRIKQGLREIEAGLRDMAFD-GARPSLAGRGGVMDSIREVLKAKAGVLFGRGSTGPAGDRKGSNNKRSGRRTPSGAPSDCSVAHKKSSEAQNALERLTSAACTAGKIGDVSALDGLADSVDLRTKNAFGRNPLYYACLCGHVRAAHFVVGRAYGSVEGIPEKERWECRKNALSEEMRRYLDTGTLP--TERLDDTNKIPKSDEGRPAVQAVLAVPPDREEQRCRGTANT----------AVRSNGRGCLVETGD-------GSAPEAVISVASLFGWGHDQENNQDY 1776
+YN H D +L L+DS QCSID TGWATVT++SAV++ AG++ +++ +LLLAN + + + TG E Q D +AA S R LV+WP I+DF+E+ P AR G R ND+ C R + FD GA+ S + E L +PSGA G++ D +G+ADSVDLR + FGRN LYYACLCGH AAHFVV RAYG VEGIP+KER ECR NALSEE+RRYLDTG T R + K DEGRPA AVPPDRE+ G + SNGR S+ E +SVASLFGWGHD++ + DY
Sbjct: 45 VYNRCHGDFSSSLENLKDSFQQCSIDGTGWATVTSISAVMKKAGITTDEAAVLLLANEPGIRNNHNNTGYAHEQRQ-DNSAAKSAPRAPLVYWPNIIDFVEQGP------------------------------AR----------------------------------------------------GFGYRG-NDVQCTEKWRTSTSSTNNIPPVAKHRFDSGAKKS---------TTPEDLNV----------------------------SPSGA----------------------------GQLKDDENPEGIADSVDLRRNDDFGRNALYYACLCGHAHAAHFVVVRAYGDVEGIPQKERRECRMNALSEEIRRYLDTGISSGATPRTQEA----KQDEGRPAQ----AVPPDREKYHHSGAERIKPDGAREHVGSAGSNGRAVDARESSLSLAHNAASSAEGALSVASLFGWGHDRQKDADY 377
BLAST of mRNA_P-littoralis_Contig20.117.1 vs. uniprot
Match: A0A6H5JWB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB7_9PHAE) HSP 1 Score: 155 bits (393), Expect = 2.690e-38 Identity = 150/467 (32.12%), Postives = 215/467 (46.04%), Query Frame = 1
Query: 496 LELAGVSLNDSTILLLANRLDDPRDPTGPMQEHFQRDATAAVSKTR--LVHWPTIVDFLEEYPFADAKNGATMPVCKSESLVSKTFPSRSFQSARKPQTDGEPAVPMKT-DKAVSPSAAEDAQQGGHNPEVTPESNVGESGGKLETDGG-------HSRRSINDLSCGGIMRIKQGLREIEAGLRDMAFDGARPSLAGRGGVMDSIREVLKAKAGVLFGRGSTGPAGDRKGSNNKRSGRRTPSGAPS--------DCSVAHKKSSE-AQNALERLTSAACTAGKIGDVSALDGLADSVDLRTKNAFGRNPLYYACLCGHVRAAHFVVGRAYGSVEGIPEKERWECRKNALSEEMRRYLDTGTLP--TERLDDTNKIPKSDEGRPAVQAVLAVPPDREEQRCRGTANT----------AVRSNGRGCLVETGDG---------SAPEAVISVASLFGWGHDQENNQDY 1776
++ AG++++++ ++LLA + + + + ++D TAAVS R LV+WP I+DF+E+ P C +E L + T + SA + + E + + D VSP A + NPEVTPES + G L + GG +S ND SC +R++QGL +I +GLR++ GA+ S MDSIRE+L+A+ G+ G + P G+ + +R GA C VA +++ + L S AC AGK GD+SAL +GIP+KER EC NALSEE+R YLDTG P T R + K DEGRP V AVPPDRE+ G +V NGR +V+ + S+ E +SVASLFGWGHD+E + DY
Sbjct: 1 MKKAGITVDEAAVILLATQPGTLNNHSTGRARNQRQDDTAAVSAPRAPLVYWPNIIDFVEQGPAPGFGYRGNDVQC-TEKLRTSTPSMNNIPSAARHRFGSEAKKSITSEDLNVSPLGAGQTKVD-ENPEVTPESRLERRDG-LSSHGGDSSVRHKNSEGDANDSSC---VRLRQGLHDISSGLREVTVQGAKLSPRQIKHAMDSIREILEAQTGMNCGEVPSTPGGESRIPLGERGPHVREEGAGEVQSKATWHGCCVAEARATSLGPRGTKSLVSTACAAGKRGDISAL-------------------------------------------KGIPQKERRECSMNALSEEIRHYLDTGISPGATPRTQEA----KQDEGRP----VQAVPPDREKNHHSGAEKMKPAGAGGDVGSVGDNGR--VVDARESPLGGAHNAASSAEGALSVASLFGWGHDREKDADY 408
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1779 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-17_002710.1 |
| Cds size | 1779 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789976.7249053-CDS-P-littoralis_Contig20:481858..482014 | 1680789976.7249053-CDS-P-littoralis_Contig20:481858..482014 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig20 481859..482014 + |
| 1680789976.7347429-CDS-P-littoralis_Contig20:482498..482795 | 1680789976.7347429-CDS-P-littoralis_Contig20:482498..482795 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig20 482499..482795 + |
| 1680789976.7466955-CDS-P-littoralis_Contig20:483413..484274 | 1680789976.7466955-CDS-P-littoralis_Contig20:483413..484274 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig20 483414..484274 + |
| 1680789976.7597046-CDS-P-littoralis_Contig20:484556..484685 | 1680789976.7597046-CDS-P-littoralis_Contig20:484556..484685 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig20 484557..484685 + |
| 1680789976.770708-CDS-P-littoralis_Contig20:486287..486623 | 1680789976.770708-CDS-P-littoralis_Contig20:486287..486623 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig20 486288..486623 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig20.117.1 >prot_P-littoralis_Contig20.117.1 ID=prot_P-littoralis_Contig20.117.1|Name=mRNA_P-littoralis_Contig20.117.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=593bp
MGGTASVVQHGVSGSRNKTDETTLLKLYNRNRRDDTGLSEHQMLMACVED SKIKPPSTIPGQDIKQHLRGHAAKTSTTPRGSGTQSCPPKTATACGDEKR RHEPDKLQRDKRRAERTRARDKAVIQMYNNYHADLDPALAKLRDSLHQCS IDRTGWATVTAMSAVLELAGVSLNDSTILLLANRLDDPRDPTGPMQEHFQ RDATAAVSKTRLVHWPTIVDFLEEYPFADAKNGATMPVCKSESLVSKTFP SRSFQSARKPQTDGEPAVPMKTDKAVSPSAAEDAQQGGHNPEVTPESNVG ESGGKLETDGGHSRRSINDLSCGGIMRIKQGLREIEAGLRDMAFDGARPS LAGRGGVMDSIREVLKAKAGVLFGRGSTGPAGDRKGSNNKRSGRRTPSGA PSDCSVAHKKSSEAQNALERLTSAACTAGKIGDVSALDGLADSVDLRTKN AFGRNPLYYACLCGHVRAAHFVVGRAYGSVEGIPEKERWECRKNALSEEM RRYLDTGTLPTERLDDTNKIPKSDEGRPAVQAVLAVPPDREEQRCRGTAN TAVRSNGRGCLVETGDGSAPEAVISVASLFGWGHDQENNQDY* back to topmRNA from alignment at P-littoralis_Contig20:481859..486623+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig20.117.1 ID=mRNA_P-littoralis_Contig20.117.1|Name=mRNA_P-littoralis_Contig20.117.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4765bp|location=Sequence derived from alignment at P-littoralis_Contig20:481859..486623+ (Pylaiella littoralis U1_48) ATGGGTGGAACGGCGTCCGTCGTGCAGCACGGCGTCAGTGGAAGCCGTAA
CAAGACAGACGAGACCACCTTGTTGAAGCTATACAACCGAAATCGCCGCG
ATGACACGGGGCTATCCGAGCATCAAATGCTCATGGCCTGCGTCGAGGAT
TCGAAGGTAGGTGGTGTGCGCACACGATGATTCCTATGTACTTCGAAGTG
TGTATTACTTCGTACTTCAAAGTACTTCGTATCATCATACACGGAACTGT
CAGCAGCAGGAAGGGGGGGTGTTTCAATGCCCAGGAATTAACAAAAGTGG
TTATGCCGCCATAGAGACCTCATTCTTTCCATATTGTTCAATGGTTCATG
ATGGCAAAGTCCGGGTCGATCTGTGTGTACATCCATGTTTCAACGTGTCA
AGTCGCTGAAGTGAATTGCAAGAGGTACATAAGGGATATTTTTCTCGCAC
AAATCTTAGTCCGCTTTCCAAGAATAAGAACACGATTTCAAAGCATTTTA
CACGTTCTCAACACTGCCGTCATTCAGGCTGGGGCACTGGCATCAATTAC
ACCAAAGTGCTGTAGTGCACATACCGGATATTCCATGGCTGACCAACCGA
CCCTCTGCGCCGCCTGGACCCCCGGTTACCAATGCACCAGATTAAACCTC
CATCAACGATTCCCGGCCAGGACATAAAACAGCACCTACGAGGGCACGCG
GCAAAAACATCAACAACCCCGCGAGGCTCTGGCACTCAATCATGTCCCCC
AAAAACTGCTACCGCCTGCGGCGACGAGAAACGGCGCCACGAGCCGGATA
AGCTTCAACGCGACAAAAGGCGAGCGGAACGGACCCGAGCGAGAGACAAA
GCAGTTATTCAAATGTACAACAACTATCATGCCGACCTGGATCCAGCTCT
AGCAAAACTGAGGGATTCTCTCCATCAATGCTCCATCGTGAGTATGAGCC
GCTGGAAATTGTCTAGCATTGGTTTACTTTACATTGTTCGAGTACAGCTG
GGGTGCTGAAACATATGCTTCATAATAAAGATATAGTGATTGAGAGATAC
TCTGGTACAGTGCAGTACGAGCGCGTCGATTTCAGTCAACATTTCACCTT
CGCCTTCGCTGCGGTCGAGGGTAGGTCATTAGTTATCAGAAGCTTATTCC
AGGGTTCGATTCTCACACCTGACGAATTTTCTTGCCTTTCTAGACGATAA
ACCTCTTGTACCGGTTTGATCTCCGGGCAAGTACAGCCTTAACTACAGGA
ATTGCAACCCTGAAGGTGAAATCCGAGTTCGTGGCTGAATAAGCTAGATT
AGCTTCTTTCTTTTTTTTCCAATGGACTACCAGTCAGCCAGATACCCTGG
AAGAATGCCGGCGAAAAAGAACAAAAACGTTTGGGCAGTCCGACCAGACG
TGGCATTGAACATCACATTTAATAGCTCCTCACGTCGCTCACCTAGCATC
CCTCGACCCCCCGGACCTAAAGCCACTGGACCAGGTTGTTTTCCGACGCA
TTTACTACATCGAAGTATCGTTTCATTTCCTCCTGACCATGTTTGGTGGG
TGCAGGATAGAACCGGCTGGGCGACAGTCACCGCTATGTCAGCTGTACTG
GAGCTAGCGGGGGTAAGCTTAAACGATTCTACGATCCTCCTACTGGCGAA
CCGGCTGGATGACCCACGTGACCCCACCGGACCAATGCAAGAACACTTTC
AACGCGATGCAACAGCGGCTGTATCGAAAACGCGGTTGGTACACTGGCCC
ACCATTGTCGATTTCCTGGAAGAATATCCCTTCGCAGACGCAAAGAATGG
TGCCACCATGCCCGTGTGCAAAAGTGAATCACTTGTCTCAAAAACTTTTC
CAAGCAGAAGCTTCCAGTCTGCCAGGAAACCCCAAACCGACGGTGAGCCG
GCAGTACCGATGAAGACTGACAAGGCGGTGTCCCCATCTGCTGCAGAAGA
TGCACAACAAGGCGGTCATAACCCAGAGGTAACGCCGGAATCAAACGTAG
GCGAAAGTGGCGGCAAGCTCGAGACCGACGGTGGCCATAGTCGGAGAAGT
ATAAACGACTTGTCGTGTGGCGGAATCATGCGCATCAAGCAAGGCCTACG
CGAAATTGAGGCTGGTTTGCGGGATATGGCGTTTGATGGTGCGAGACCAT
CCCTTGCTGGAAGAGGGGGGGTCATGGACAGCATACGAGAGGTCCTAAAA
GCAAAAGCCGGAGTGCTTTTTGGAAGAGGGAGCACTGGGCCTGCTGGTGA
CCGAAAGGGGTCAAACAACAAAAGAAGTGGACGCAGGACTCCATCAGGAG
CTCCGAGCGATTGTAGTGTGGCTCACAAGAAATCGAGCGAAGCCCAGAAC
GCACTCGAGAGGTTGACGAGTGCGGCCTGCACGGCGGGCAAGATTGGGGA
TGTTTCCGCTCTCGACGTAAGTAGGACGAAGCGGCACAAACGAGGAGAGA
TTCGGCCTATCCCTGACCTATGCGGTCAAGTGTAGGGCAAGCGCGTACCG
CGTACCGGTACAACAGCTATGCACTCAACGACAAACGTGCAACAACCACA
GCCTTAGTATGTGCGTGTGAGCCGCGCGATTGACGACGGATCATTGTGTT
TGAGAGACTTTTACGCGACTATCATCATCTTGGTTGGATGGCAGGCTGAC
AAAGCTTCTCTCTTCCGCCTTCCAAATCCGCACGTGCATTGTACAAAGGG
CCTTGCTGACAGCGTGGACTTGAGAACGAAGAACGCTTTTGGCAGAAACC
CGCTGTATTACGCGTGCCTCTGTGGCCACGTGCGCGCGGCGCATTTCGTC
GTAGGTCGCGCCTACGGTAGTGTCGAGGTACGTCGCTTGCCATCTTCTCA
ATCCATTGTTTCTACCGCTGTTGAACAATGATACATACCTTGTTCGAGAA
TCCACAAGGAAGTATTGGTACGGCTAAGCTTTATTTATATAGCAGTGGCC
GTCAATTTGAATGAAGGAGAATGATACCGAAATATCGTCCATACACACGC
ATTCGTCCAACGGGGGTGCCGATTTTTTCTCGAGAATCCACAAGAAGTGT
CGGTATGGAGTAGTTGATCGTAACAGGGGCAACTTTAACACAAACTGAAG
GAGAGTTATAACGAAGTATCGTCGATGCGCACCAATTTGTCTGAAGGCGG
TCCCGACATTCTCCCCGTCATCAGTTTTGAGAGTAAAAACCTGAAACCAA
GCACATGGTGATTGCGTGGGCAAGACAAAAAAAATGATTCCGTGTCGAAA
TTAGTTGCATCAACAATCTATTAGTGAACTTCGTAATCAATTTCTACCGA
TATTGAATCTACTGCCACATTCGCCTTATGGCAACTTGAAGTTTCTATGA
CAATTTGTGAGAAAACTCCCGAAAACTCTACCAAGCTGGGTTTAACTAAT
AGATAGATGTTCTGGACTCCCTGAGACGACAACAAAGTATTGATCAAACA
ATTTCTCGAAAAGCACACATGGCAAGAGTGAAAACAATCCCATGACTTTG
GCGTTCAGTATCTCGCCCCACATAGCTTCTTTTGAGAAGCAAACACACGA
TTGATCTGGGGTGCGGGTCCAATTCGTTCGAAGAGTCCGATAGGTTATTC
GACATATATCGTTTGCATTTTTCGCTCGAGTGTTCACAGCCGGAGCCTGG
GAGAAGCGTATTTTCACCCTTCACTCGCGTAAAAACACAATCTGAGCAAC
TGCTTGAGCACGAAAACACTCCTCGGCAAGATACGTTCAAGTCCGGTGTC
AAAACAGTATATTTTTAAACGCATGATCTTTGTGTCGAGCACGAAAATCA
TAACTGAATTGAGTCGAAACTGTTGAAACGCAAAACCCAACGACGCAAAA
AACAAATCTGGTATCAAGATGTTTCTACTGGACTGAAAGACCTTACCGGC
GATCGACATATACATCGTGTATTTCTTGTGTTGACATCCGGATTCCTCAA
AACGATTCAGTCCGCATGATCTGTGGATACTTTTGAAAATTGGTGCGGTG
CATGGACCATCTGTGTGTATATTAAAAAGGTCGGACGTGCCGTGTGAAGA
TATCCTCAATTTTTCAAGTGTGTCAACTCTATTTCCACAAGGCTGTCATA
GCCCCGTTTTCGGAATACGGTGCACTGGGAGACACCAGCACACGATCATG
CTGACAACAACCACGTAGCTAGAGGGGTTTCCAGTTTCCCCACGTTTTTT
CGTAATGCAAGGGCGCTGCTTGTCACTCCTGCGATGGGTTTTACTACAGT
GGCCGCGGTGACTGTCGTTGAACAAATAGGCACCAGTCAGCTATCAACAT
GCGTTCAAGTCGGGGAGAGGCTCGAGAACGTCGACAAGATGAAATGAGAT
TTCGAACCCGACGCCTGATACTACGATACTTTCGTCCCCACTCGTACTTT
TCGTGTCGACCTTCCTTCTCTATCGGTAGGGGATCCCCGAGAAGGAACGC
TGGGAGTGTCGCAAGAACGCGCTGTCCGAAGAAATGCGGCGCTACCTCGA
CACGGGAACGTTGCCCACTGAAAGGCTCGACGACACCAACAAGATCCCGA
AATCAGACGAAGGACGGCCTGCTGTGCAGGCTGTGCTGGCTGTCCCACCA
GACAGAGAAGAACAAAGATGCCGCGGTACGGCAAATACTGCTGTCCGATC
CAATGGGAGGGGATGCTTGGTAGAGACTGGGGACGGCTCAGCTCCAGAGG
CTGTTATTTCTGTGGCGTCTCTCTTCGGATGGGGGCACGACCAGGAAAAC
AACCAAGACTACTGA back to topCoding sequence (CDS) from alignment at P-littoralis_Contig20:481859..486623+ >mRNA_P-littoralis_Contig20.117.1 ID=mRNA_P-littoralis_Contig20.117.1|Name=mRNA_P-littoralis_Contig20.117.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1779bp|location=Sequence derived from alignment at P-littoralis_Contig20:481859..486623+ (Pylaiella littoralis U1_48) ATGGGTGGAACGGCGTCCGTCGTGCAGCACGGCGTCAGTGGAAGCCGTAA CAAGACAGACGAGACCACCTTGTTGAAGCTATACAACCGAAATCGCCGCG ATGACACGGGGCTATCCGAGCATCAAATGCTCATGGCCTGCGTCGAGGAT TCGAAGATTAAACCTCCATCAACGATTCCCGGCCAGGACATAAAACAGCA CCTACGAGGGCACGCGGCAAAAACATCAACAACCCCGCGAGGCTCTGGCA CTCAATCATGTCCCCCAAAAACTGCTACCGCCTGCGGCGACGAGAAACGG CGCCACGAGCCGGATAAGCTTCAACGCGACAAAAGGCGAGCGGAACGGAC CCGAGCGAGAGACAAAGCAGTTATTCAAATGTACAACAACTATCATGCCG ACCTGGATCCAGCTCTAGCAAAACTGAGGGATTCTCTCCATCAATGCTCC ATCGATAGAACCGGCTGGGCGACAGTCACCGCTATGTCAGCTGTACTGGA GCTAGCGGGGGTAAGCTTAAACGATTCTACGATCCTCCTACTGGCGAACC GGCTGGATGACCCACGTGACCCCACCGGACCAATGCAAGAACACTTTCAA CGCGATGCAACAGCGGCTGTATCGAAAACGCGGTTGGTACACTGGCCCAC CATTGTCGATTTCCTGGAAGAATATCCCTTCGCAGACGCAAAGAATGGTG CCACCATGCCCGTGTGCAAAAGTGAATCACTTGTCTCAAAAACTTTTCCA AGCAGAAGCTTCCAGTCTGCCAGGAAACCCCAAACCGACGGTGAGCCGGC AGTACCGATGAAGACTGACAAGGCGGTGTCCCCATCTGCTGCAGAAGATG CACAACAAGGCGGTCATAACCCAGAGGTAACGCCGGAATCAAACGTAGGC GAAAGTGGCGGCAAGCTCGAGACCGACGGTGGCCATAGTCGGAGAAGTAT AAACGACTTGTCGTGTGGCGGAATCATGCGCATCAAGCAAGGCCTACGCG AAATTGAGGCTGGTTTGCGGGATATGGCGTTTGATGGTGCGAGACCATCC CTTGCTGGAAGAGGGGGGGTCATGGACAGCATACGAGAGGTCCTAAAAGC AAAAGCCGGAGTGCTTTTTGGAAGAGGGAGCACTGGGCCTGCTGGTGACC GAAAGGGGTCAAACAACAAAAGAAGTGGACGCAGGACTCCATCAGGAGCT CCGAGCGATTGTAGTGTGGCTCACAAGAAATCGAGCGAAGCCCAGAACGC ACTCGAGAGGTTGACGAGTGCGGCCTGCACGGCGGGCAAGATTGGGGATG TTTCCGCTCTCGACGGCCTTGCTGACAGCGTGGACTTGAGAACGAAGAAC GCTTTTGGCAGAAACCCGCTGTATTACGCGTGCCTCTGTGGCCACGTGCG CGCGGCGCATTTCGTCGTAGGTCGCGCCTACGGTAGTGTCGAGGGGATCC CCGAGAAGGAACGCTGGGAGTGTCGCAAGAACGCGCTGTCCGAAGAAATG CGGCGCTACCTCGACACGGGAACGTTGCCCACTGAAAGGCTCGACGACAC CAACAAGATCCCGAAATCAGACGAAGGACGGCCTGCTGTGCAGGCTGTGC TGGCTGTCCCACCAGACAGAGAAGAACAAAGATGCCGCGGTACGGCAAAT ACTGCTGTCCGATCCAATGGGAGGGGATGCTTGGTAGAGACTGGGGACGG CTCAGCTCCAGAGGCTGTTATTTCTGTGGCGTCTCTCTTCGGATGGGGGC ACGACCAGGAAAACAACCAAGACTACTGA back to top
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