prot_P-littoralis_Contig1.148.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1.148.1
Unique Nameprot_P-littoralis_Contig1.148.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length311
Homology
BLAST of mRNA_P-littoralis_Contig1.148.1 vs. uniprot
Match: D8LNC5_ECTSI (Nuclear nucleic acid-binding protein C1D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC5_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 2.280e-92
Identity = 144/156 (92.31%), Postives = 149/156 (95.51%), Query Frame = 0
Query:    1 MAGASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKAELDRIRGYFGRLKQVGKPPEQRTLKVDAEASRRFINAALSSDSVWQNAKGTDPKSAQERRAAAGIGRSNPAGQPE 156
            MAGASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVG CVSA DRA LNLQVAYGVSSLFYMFLKTQGVSPSTHPVK ELDRIRGYFGRLK VGKPPEQRTLKVD +ASRRFINAALS DSVWQNAKGTDPKSAQ++RA+AGIGR+NPAGQPE
Sbjct:    1 MAGASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTDPKSAQQKRASAGIGRANPAGQPE 156          
BLAST of mRNA_P-littoralis_Contig1.148.1 vs. uniprot
Match: UPI001F04DAC0 (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04DAC0)

HSP 1 Score: 97.1 bits (240), Expect = 5.530e-21
Identity = 49/130 (37.69%), Postives = 84/130 (64.62%), Query Frame = 0
Query:   13 SLKNFERALGHVRNSVRPLTLMSREEVGTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKAELDRIRGYFGRLKQVGKPPEQRTLKVDAEASRRFINAALSSDSVWQNAKGTDPKSAQERRA 142
            ++K+F  + G V  ++ PL   S +E+   +   DRAKL+L V YG++++F+++L TQGV+P  H VK ELDRI+ Y  ++K V +  ++ ++K+D +A+RRF+  AL+      N K ++  S +E+RA
Sbjct:   18 AMKDFHHSFGSVEETLEPLLRSSNDELHEKLDVLDRAKLDLMVVYGINTMFWIYLITQGVNPKEHGVKHELDRIKNYMKKVKDVSER-KKASMKIDKDAARRFVKGALA------NPKASEVVSDKEKRA 140          
BLAST of mRNA_P-littoralis_Contig1.148.1 vs. uniprot
Match: A0A835ZH36_9STRA (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH36_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.640e-21
Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = 0
Query:    3 GASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKAELDRIRGYFGRLKQVGKPPEQRTLKVDAEASRRFINAALSSDSVWQNAKGTDPKSAQERRA 142
            G++  +  V  L N  +AL ++++ +RPLT  +REE+ + V+  + AKLN  +AYG+SSL+YM L+T+G   + H VK ELDRI+G  GRL+ V  P  QR + V+  A++RFI   L+ +      +G D    +ERRA
Sbjct:   14 GSNSATDFVAPLTNLHKALHNLKSKLRPLTETTREELASQVTKQEMAKLNAAMAYGISSLYYMLLRTKGCDTTDHGVKKELDRIKGAMGRLQMVKVP--QRGIVVNVAAAQRFIKHGLAGN------EGVD----EERRA 141          
BLAST of mRNA_P-littoralis_Contig1.148.1 vs. uniprot
Match: A0A2R2MU34_LINUN (Nuclear nucleic acid-binding protein C1D n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MU34_LINUN)

HSP 1 Score: 96.7 bits (239), Expect = 1.960e-20
Identity = 60/167 (35.93%), Postives = 96/167 (57.49%), Query Frame = 0
Query:    1 MAGASEE--SKGVESLKNFERALGHVRNSVRPLTLMSREEVGTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKAELDRIRGYFGRLKQVGKPPEQRTLKVDAEASRRFINAALSSDSVWQ--NAKGTDPKSAQERRAAAGIGRSNPAGQPEMINNTLE 163
            MAG SE+  S+  + L +F+ +L  V ++++PL +    EV   ++  D AK+NL  AY V+SLF+ +L  +G +P  HPVK ELDRIRGY  R+K++ +  +++  K+D  AS+RF+ +AL     WQ  +AK +  K      + A   R  P  + + +N   E
Sbjct:    5 MAGTSEDFPSEIQDQLSSFDDSLTKVEDTLKPLLMTPLNEVHEKLNPLDCAKVNLVAAYAVNSLFWTYLNVRGENPKEHPVKQELDRIRGYMNRVKEIQE--KEKAPKLDKPASKRFVKSAL-----WQAAHAKASAQKDDGASTSQADTSRLQPQPKRQRLNEQNE 164          
BLAST of mRNA_P-littoralis_Contig1.148.1 vs. uniprot
Match: A7SDV0_NEMVE (Nuclear nucleic acid-binding protein C1D n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SDV0_NEMVE)

HSP 1 Score: 95.1 bits (235), Expect = 4.090e-20
Identity = 46/123 (37.40%), Postives = 79/123 (64.23%), Query Frame = 0
Query:   11 VESLKNFERALGHVRNSVRPLTLMSREEVGTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKAELDRIRGYFGRLKQVGKPPEQRTLKVDAEASRRFINAALSSDSVWQNAKGTD 133
            V+S+++F  +LG++ ++++PL   S +++   +     AKLNL VAY ++SLF+M+L TQG+ P  HP+K ELDRI+ Y  ++K+V    E  ++++D  A++RF+ +AL     WQ     D
Sbjct:   16 VDSMESFHESLGNIEDALKPLLENSTDDMKESMGPLQLAKLNLVVAYSINSLFWMYLITQGMDPKEHPIKQELDRIKKYMVKVKEVQHKQEV-SMRIDKGAAKRFVKSAL-----WQPTSNED 132          
BLAST of mRNA_P-littoralis_Contig1.148.1 vs. uniprot
Match: UPI00138FBE06 (nuclear nucleic acid-binding protein C1D n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FBE06)

HSP 1 Score: 95.1 bits (235), Expect = 4.410e-20
Identity = 46/123 (37.40%), Postives = 79/123 (64.23%), Query Frame = 0
Query:   11 VESLKNFERALGHVRNSVRPLTLMSREEVGTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKAELDRIRGYFGRLKQVGKPPEQRTLKVDAEASRRFINAALSSDSVWQNAKGTD 133
            V+S+++F  +LG++ ++++PL   S +++   +     AKLNL VAY ++SLF+M+L TQG+ P  HP+K ELDRI+ Y  ++K+V    E  ++++D  A++RF+ +AL     WQ     D
Sbjct:   16 VDSMESFHESLGNIEDALKPLLENSTDDMKESMGPLQLAKLNLVVAYSINSLFWMYLITQGMDPKEHPIKQELDRIKKYMVKVKEVQHKQEV-SMRIDKGAAKRFVKSAL-----WQPTSNED 132          
BLAST of mRNA_P-littoralis_Contig1.148.1 vs. uniprot
Match: A0A2D4BWA5_PYTIN (Nuclear nucleic acid-binding protein C1D n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWA5_PYTIN)

HSP 1 Score: 90.1 bits (222), Expect = 3.780e-18
Identity = 51/124 (41.13%), Postives = 79/124 (63.71%), Query Frame = 0
Query:   11 VESLKNFERALGHVRNSVRPLTLMSREEVGTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPS----THPVKAELDRIRGYFGRLKQVGKPPEQRTLKVDAEASRRFINAALSSDSVWQNAK 130
            VE+L + ++ L  V   ++ L   S EE    +S  ++AK+ + +AY +++L Y++LKTQGVS      TH VK ELDR++G+  ++K   +  +  TLK+D EAS+RFIN ALS D V+ +AK
Sbjct:    6 VEALTSVDQTLAAVEEHLQVLKNKSLEEFLAELSPIEKAKVQVSLAYSINALLYVYLKTQGVSSKDIRQTH-VKQELDRVKGFIKKIKDTEELAKGPTLKLDKEASQRFINNALSGDQVYVDAK 128          
BLAST of mRNA_P-littoralis_Contig1.148.1 vs. uniprot
Match: C1D_XENLA (Nuclear nucleic acid-binding protein C1D n=2 Tax=Xenopus TaxID=8353 RepID=C1D_XENLA)

HSP 1 Score: 88.6 bits (218), Expect = 6.230e-18
Identity = 44/109 (40.37%), Postives = 71/109 (65.14%), Query Frame = 0
Query:   12 ESLKNFERALGHVRNSVRPLTLMSREEVGTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKAELDRIRGYFGRLKQVGKPPEQRTLKVDAEASRRFINAAL 120
            E L  FE ++G V   ++ +  +SR E+   +   ++AKL+L  AY ++SLF+++L TQG++P  HPVK EL+RIRGY  R+K++     ++  ++D  A+RRFI  AL
Sbjct:   17 EYLMAFENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIYLTTQGINPKEHPVKEELERIRGYMNRVKEI--TDRKKAARLDKGAARRFIKHAL 123          
BLAST of mRNA_P-littoralis_Contig1.148.1 vs. uniprot
Match: L8HHM1_ACACA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHM1_ACACA)

HSP 1 Score: 89.4 bits (220), Expect = 6.320e-18
Identity = 44/129 (34.11%), Postives = 81/129 (62.79%), Query Frame = 0
Query:   13 SLKNFERALGHVRNSVRPLTLMSREEVGTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKAELDRIRGYFGRLKQVGKPPEQRTLKVDAEASRRFINAALSSDSVWQNAKGTDPKSAQERR 141
            ++   E+A+  V   +      S +E+   +S  D A+L++ +AY +++LFY++LKTQGV P+ HPVK E++R++ Y  +LKQ+ +P E  ++ +D +A+ RFI  A++S     NA+    ++A+E +
Sbjct:   16 TISTLEKAVSDVEKHIESYLKTSVDEITNDLSTEDGARLSVLLAYALNTLFYIYLKTQGVDPADHPVKDEIERVKEYIQKLKQLTQPKETPSMVLDKQAANRFIQHAVNS----ANAENERSEAAREEK 140          
BLAST of mRNA_P-littoralis_Contig1.148.1 vs. uniprot
Match: A0A673HC71_9TELE (Nuclear nucleic acid-binding protein C1D n=20 Tax=Cyprinidae TaxID=7953 RepID=A0A673HC71_9TELE)

HSP 1 Score: 88.2 bits (217), Expect = 8.900e-18
Identity = 43/109 (39.45%), Postives = 71/109 (65.14%), Query Frame = 0
Query:   12 ESLKNFERALGHVRNSVRPLTLMSREEVGTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKAELDRIRGYFGRLKQVGKPPEQRTLKVDAEASRRFINAAL 120
            E+L +F+ +L  V+N V+ L  +SR      +   DRAKL+L  AY ++S+F+M+L TQGV+P  H +K ELDRIR Y  ++K++    +++  ++D +A+ RF+  AL
Sbjct:   16 ENLNDFDSSLSSVQNMVQTLVSVSRSHNLLKLDPLDRAKLDLMSAYALNSMFWMYLVTQGVNPKDHAIKQELDRIRTYMNKVKEI--TDKRKAARLDKDAASRFVRNAL 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.148.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC5_ECTSI2.280e-9292.31Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
UPI001F04DAC05.530e-2137.69nuclear nucleic acid-binding protein C1D-like n=1 ... [more]
A0A835ZH36_9STRA6.640e-2140.71Nuclear nucleic acid-binding protein C1D (Fragment... [more]
A0A2R2MU34_LINUN1.960e-2035.93Nuclear nucleic acid-binding protein C1D n=1 Tax=L... [more]
A7SDV0_NEMVE4.090e-2037.40Nuclear nucleic acid-binding protein C1D n=1 Tax=N... [more]
UPI00138FBE064.410e-2037.40nuclear nucleic acid-binding protein C1D n=1 Tax=N... [more]
A0A2D4BWA5_PYTIN3.780e-1841.13Nuclear nucleic acid-binding protein C1D n=2 Tax=P... [more]
C1D_XENLA6.230e-1840.37Nuclear nucleic acid-binding protein C1D n=2 Tax=X... [more]
L8HHM1_ACACA6.320e-1834.11Nuclear nucleic acid-binding protein C1D n=1 Tax=A... [more]
A0A673HC71_9TELE8.900e-1839.45Nuclear nucleic acid-binding protein C1D n=20 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 184..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..310
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..310
IPR007146Sas10/Utp3/C1DPFAMPF04000Sas10_Utp3coord: 14..92
e-value: 6.6E-11
score: 42.7
IPR011082Exosome-associated factor Rrp47/DNA strand repair C1DPANTHERPTHR15341SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSORcoord: 10..207

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:859989..867951 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.148.1mRNA_P-littoralis_Contig1.148.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig1 859989..868808 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1.148.1 ID=prot_P-littoralis_Contig1.148.1|Name=mRNA_P-littoralis_Contig1.148.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=311bp
MAGASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGTCVSAADRAK
LNLQVAYGVSSLFYMFLKTQGVSPSTHPVKAELDRIRGYFGRLKQVGKPP
EQRTLKVDAEASRRFINAALSSDSVWQNAKGTDPKSAQERRAAAGIGRSN
PAGQPEMINNTLEAAAAAVLGTPAAQDTPAGTTAKKAGRQRHQEQRRRQQ
QQQQQQESVPGLGGSGSKRKHAAAAAAAAGADGAGSAAGGGAAPSTVGGT
TGKTSTGGGKGGKVNSGEGPGAAKWGEGPDAVPGGSPPAVKKAKGSGRKN
KKKAAGHRSW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
IPR011082Exosome-assoc_fac/DNA_repair