mRNA_P-littoralis_Contig2.119.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig2.119.2
Unique Name	mRNA_P-littoralis_Contig2.119.2
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig2.119.2 vs. uniprot
Match: A0A6H5JJI9_9PHAE (SPRY domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI9_9PHAE)

HSP 1 Score: 521 bits (1342), Expect = 1.880e-174
Identity = 298/562 (53.02%), Postives = 355/562 (63.17%), Query Frame = 1

Query:  241 VPTPVLLIASEWLAVADLLTLGTVDRSFRGLTKDETLWKAAAHHLWKSALLEGNTLCVDIDEAGL-KDVTANVALQDICRCMVGAWPTHIDLGLRGDEFLQGLVDGVLQ-------AGXXXXXXXXXXXXXXXDTPAAAWAELCTGVVFRGRLGGDRAVRANLPFPWMGTMHRLSSSTTFEPDEEAFSFGC-VVKTSLSRHDPLQRTLYPDTFLARVKADAPFASLWPGHAVATSLEDVSRAPAEVDRGSGXXXXXXGNAAAGS--DQSEELQLERKRVPSSGPTPFFHAGHTAYFEITLERMVAPLEQPQGEEFDLEQCVAIGLANDSFDLDGKQPGWDRHSWGFHSDDGCLHHRGFINV---ANPTTFGPGDTVGCGLLYPRGCGASVRRVFGRTIRWPS-GVSAGGSGDGAIFFTKNGRFLSVAFHGVDVKRSLYPCIGLDSHCCVTANFGSKAFAFDVPTFEACFTGAA----PKLAEADDYTAAIRMVYSRGNGFTNPRLLCPYIRFAREEMEEDVDENSVACSGTLASSQGRRDWPELGSLASESEILRQSLKLFR 1869
            V  PVLL A+ WL + DLL LGTV+RSFR LTKD+ LWK+AA  L++SAL++G    V+    GL KD   N+ LQDICRCMVGAWPTHID   R DE LQ  + GVLQ        G               DT  AA   LC GVVFRG LGGDRAVRAN+PFPW G       + T  P     S G  +V+  L+ +D      YPD  LARVKA APFA LWPGHA A    +      E  RG        GN   G   D++E ++L+ +R+PSSGP PFFHAG+TAYFEITL   +APLEQP+ E+F LEQCVAIGLA+D+F L+ KQPGWDR+SWG HSDDGC HHRG I +   A+PTTFGPGDTVGCGLLYPRG       + GR    P+ G +  G  +GA+FFTKNGR+L +A   V+VKR LYPC+GLDSHCCVT NFG K FAFDVP FEA FTGAA    P + E   +T  I+ VY   NGFTNPRLLCP++R      EE  D+  V  +   +  +G      +G LASESE+LR+SLK  R
Sbjct:   44 VAPPVLLSAATWLPIRDLLALGTVNRSFRDLTKDDMLWKSAAVFLFRSALVDGQNSLVEGVSVGLHKDAPGNLTLQDICRCMVGAWPTHIDRHWRADELLQASIGGVLQPLQAGAAGGGVSGSGADPENAQQADTALAAG--LCDGVVFRGGLGGDRAVRANVPFPWAG----CGRTRTQPPCGADMSRGARLVRMELTTYDRPVYLHYPDVVLARVKAGAPFALLWPGHAAAAGGGEGEGGSGEDSRG--------GNVGHGGLVDENERVRLKVERLPSSGPAPFFHAGYTAYFEITLGDTMAPLEQPRDEDFHLEQCVAIGLAHDNFPLEDKQPGWDRNSWGLHSDDGCFHHRGAIALPATADPTTFGPGDTVGCGLLYPRGLAHYEHWLSGRGGALPTAGENDSGGNNGAVFFTKNGRYLGMASRRVNVKRPLYPCVGLDSHCCVTVNFGVKPFAFDVPAFEALFTGAALGSAPPVRERRCHTDDIKNVYCGRNGFTNPRLLCPHLRLQPPVDEEGQDDARVPKTTRGSVPKG------VGVLASESELLRRSLKSIR 585

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BLAST of mRNA_P-littoralis_Contig2.119.2 vs. uniprot
Match: D7G760_ECTSI (SPRY domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G760_ECTSI)

HSP 1 Score: 354 bits (909), Expect = 6.810e-112
Identity = 239/561 (42.60%), Postives = 282/561 (50.27%), Query Frame = 1

Query:  241 VPTPVLLIASEWLAVADLLTLGTVDRSFRGLTKDETLWKAAAHHLWKSALLEGNTLCVDIDEAGL-KDVTANVALQDICRCMVGAWPTHIDLGLRGDEFLQGLVDGVLQ-------AGXXXXXXXXXXXXXXXDTPAAAWAELCTGVVFRGRLGGDRAVRANLPFPWMGTMHRLSSSTTFEPDEEAFSFGC-VVKTSLSRHDPLQRTLYPDTFLARVKADAPFASLWPGHAVATSLEDVSRAPAEVDRGSGXXXXXXGNAAAGSDQSEELQLERKRVPSSGPTPFFHAGHTAYFEITLERMVAPLEQPQGEEFDLEQCVAIGLANDSFDLDGKQPGWDRHSWGFHSDDGCLHHRGFINV---ANPTTFGPGDTVGCGLLYPRGCGASVRRVFGRTIRWPS-GVSAGGSGDGAIFFTKNGRFLSVAFHGVDVKRSLYPCIGLDSHCCVTANFGSKAFAFDVPTFEACFTGAA----PKLAEADDYTAAIRMVYSRGNGFTNPRLLCPYIRFAREEMEEDVDENSVACSGTLASSQGRRDWPE-LGSLASESEILRQSLKLFR 1869
            V  PVLL A+ WL + DLL LGTVDRSFR LTKD+ LWK AA  L++SAL++G +  V+    GL KD   N+ LQDICRCMVGAWPTHID   R DE LQ  + GVLQ       +G               DT  AA   LC GVVFRG LGGDRAVRAN+PFPW G     S      P     S G  +VK  L+ +D             R KA A                                                       V  SG         TA +     +                                KQPGWDR+SWG HSDDGC HHRG I +   A+PTTFGPGDTVGCGLLYPRG       + GR    P+ G +  G   GAIFFTKNGR+L +A   V+VKR LYPC+GLDSHCCV  NFG+K FAFDVP FEA FTGAA    P + E   +T  I+ VYS  NGFTNPR+LCP++R      EE  ++  V  +         R+ P+ +G LASESE+LR+SLK  R
Sbjct:   20 VAPPVLLSAASWLPIRDLLALGTVDRSFRDLTKDDMLWKLAAVFLFRSALVDGQSSLVEGVSVGLHKDAPGNLTLQDICRCMVGAWPTHIDRHWRADELLQASIGGVLQPLQAGAASGGVSGSDADPENAQRADTALAAG--LCDGVVFRGGLGGDRAVRANVPFPWAGCGRTRSQ----RPRGADMSRGSSLVKMELTTYD-------------RAKAAA--------------------------------------------------ARTAAVEMSG---------TAGWSTRTRK-------------------------------DKQPGWDRNSWGLHSDDGCFHHRGAIALSATADPTTFGPGDTVGCGLLYPRGLAHYEHWLSGRGGALPTAGENDSGGSKGAIFFTKNGRYLGMASRRVNVKRPLYPCVGLDSHCCVAVNFGAKPFAFDVPAFEALFTGAALGSAPPVRERRCHTDDIKKVYSGRNGFTNPRVLCPHLRLQPPVDEERQNDARVPKT--------TRNVPKGVGVLASESELLRRSLKSIR 463

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BLAST of mRNA_P-littoralis_Contig2.119.2 vs. uniprot
Match: A0A835ZEA9_9STRA (B30.2/SPRY domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.840e-21
Identity = 72/171 (42.11%), Postives = 89/171 (52.05%), Query Frame = 1

Query: 1087 AYFEITLERMVAPLEQPQGEEFDLEQCVAIGLANDSFDLDGKQPGWDRHSWGFHSDDG-CLHHRGFINVANPTTFGPGDTVGCGLLYPRGCGASVRRVFGRTIRWPSGVSAGGSGDGAIFFTKNGRFLSVAFHGVDVKRSLYPCIGLDSHCCVTANFGSKA-FAFDVPTFE 1593
            +YFE+++    AP    +G    + +C+AIGL+ + F L GK PGWD  S+G+HSDDG   H+ G +      TFG GD VGCGL Y  G                 GV A       IFFT NGR+L VAF GV     LYP +G+DS   V  N G  A FAF V  FE
Sbjct: 1275 SYFEVSI----APRTGARGAG--VPECIAIGLSEEQFTLQGKMPGWDSCSYGYHSDDGGAFHNAGSMLFRYGPTFGRGDVVGCGLDYSHG----------------GGVCAD------IFFTLNGRYLGVAFAGVRAG-GLYPTVGIDSAAPVRINLGGAAPFAFGVGAFE 1416

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BLAST of mRNA_P-littoralis_Contig2.119.2 vs. uniprot
Match: A0A7S4S3F7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S3F7_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.080e-20
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1

Query: 1159 EQCVAIGLANDSFDLDGKQPGWDRHSWGFHSDDGCLHHRG--FINVANPTTFGPGDTVGCGLLYPRGCGASVRRVFGRTIRWPSGVSAGGSGDGAIFFTKNGRFLSVAFHGVDV---KRSLYPCIGLDSHCCVTANFGSKAFAFDVPTF 1590
            ++CVA+GL+  SFD   K PGWD+HS+G+H DDG + H G   I+   PT FG  DTVGCG+ Y                              ++FFT NG+FL  AF  + V   ++ LYP +G+D++C +  NFG K F FD+ +F
Sbjct:  583 KECVAVGLSTKSFDTQHKMPGWDKHSYGYHGDDGGIFHAGGNTIHKIGPT-FGVNDTVGCGIDYKAK---------------------------SVFFTLNGKFLVFAFTQLSVSTLRKGLYPTVGVDTNCPLFINFGEKPFEFDLASF 703

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BLAST of mRNA_P-littoralis_Contig2.119.2 vs. uniprot
Match: A0A7S4S4K4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S4K4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.230e-20
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1

Query: 1159 EQCVAIGLANDSFDLDGKQPGWDRHSWGFHSDDGCLHHRG--FINVANPTTFGPGDTVGCGLLYPRGCGASVRRVFGRTIRWPSGVSAGGSGDGAIFFTKNGRFLSVAFHGVDV---KRSLYPCIGLDSHCCVTANFGSKAFAFDVPTF 1590
            ++CVA+GL+  SFD   K PGWD+HS+G+H DDG + H G   I+   PT FG  DTVGCG+ Y                              ++FFT NG+FL  AF  + V   ++ LYP +G+D++C +  NFG K F FD+ +F
Sbjct:  656 KECVAVGLSTKSFDTQHKMPGWDKHSYGYHGDDGGIFHAGGNTIHKIGPT-FGVNDTVGCGIDYKAK---------------------------SVFFTLNGKFLVFAFTQLSVSTLRKGLYPTVGVDTNCPLFINFGEKPFEFDLASF 776

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BLAST of mRNA_P-littoralis_Contig2.119.2 vs. uniprot
Match: A0A5A8DVX2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DVX2_CAFRO)

HSP 1 Score: 103 bits (258), Expect = 3.400e-19
Identity = 69/172 (40.12%), Postives = 83/172 (48.26%), Query Frame = 1

Query: 1087 AYFEITLERMVAPLEQPQGEEFDLEQCVAIGLANDSFDLDGKQPGWDRHSWGFHSDDGCLHHRGFINVANPTTFGPGDTVGCGL-LYPRGCGASVRRVFGRTIRWPSGVSAGGSGDGAIFFTKNGRFLSVAFHGVDVKRSLYPCIGLDSHCCVTANFGSKA---FAFDVPTF 1590
            AYFE+++ R  A  +   G       CVA+GL    F L G  PGWDRHS+G+HSDDG + H           FGPGD VGCGL   P  C  +  R F              S    IFFT NGR +  AF  VD  R  +P +G+D    V  NFGS A   FAF +  F
Sbjct:  216 AYFEVSIGR--AHRDWTPGRS----SCVAVGLCTRRFVLAGCLPGWDRHSYGWHSDDGFVFHSSGHGSPFGPAFGPGDVVGCGLDTLP--CLPTDSRGFD-------------SSAARIFFTLNGRMVGYAFEAVDAARRWHPVVGIDGPAPVRVNFGSDAREPFAFPLARF 366

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BLAST of mRNA_P-littoralis_Contig2.119.2 vs. uniprot
Match: A0A1E7FVL0_9STRA (SPRY-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVL0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.150e-18
Identity = 58/151 (38.41%), Postives = 81/151 (53.64%), Query Frame = 1

Query: 1159 EQCVAIGLANDSFDLDGKQPGWDRHSWGFHSDDGCLHHR--GFINVANPTTFGPGDTVGCGLLYPRGCGASVRRVFGRTIRWPSGVSAGGSGDGAIFFTKNGRFLSVAFHGVD---VKRSLYPCIGLDSHCCVTANFGS--KAFAFDVPTF 1590
            + CVA+GLA +SF +  + PGWDR S+G+H DDG + H   G +    P  FG  DTVGCG+ Y                     +S G      IF+T NG+FL  AF  +D   ++  LYP +GLD++C +  NFG+  +AF FD+  F
Sbjct:  480 KDCVAVGLATESFRVHSRMPGWDRQSFGYHGDDGGIFHSSGGMLKSYGPK-FGSRDTVGCGIDY---------------------ISKG------IFYTLNGKFLGYAFKDIDNSVLQTDLYPVVGLDTNCPIHVNFGTDNEAFQFDLSNF 602

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BLAST of mRNA_P-littoralis_Contig2.119.2 vs. uniprot
Match: A0A813CPA2_9DINO (Ranbp9 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CPA2_9DINO)

HSP 1 Score: 100 bits (250), Expect = 1.430e-18
Identity = 68/172 (39.53%), Postives = 82/172 (47.67%), Query Frame = 1

Query: 1087 AYFEITLERMVAPLEQPQGEEFDLEQCVAIGLANDSFDLDGKQPGWDRHSWGFHSDDGCLHHRGFINVANPTTFGPGDTVGCGL-LYPRGCGASVRRVFGRTIRWPSGVSAGGSGDGAIFFTKNGRFLSVAFHGVDVKRSLYPCIGLDSHCCVTANFGSKA---FAFDVPTF 1590
            AYFE+++ R  A  +   G       CVA+GL    F L G  PGWDRHS+G+HSDDG + H           FG GD VGCGL   P  C  +  R F              S    IFFT NGR +  AF  VD  R  +P +G+D    V  NFGS A   FAF +  F
Sbjct:  214 AYFEVSIGR--AHRDWTPGRS----SCVAVGLCTRRFVLAGCLPGWDRHSYGWHSDDGFVFHSSGHGSPFGPAFGQGDVVGCGLDTLP--CLPTDSRGFD-------------SSAARIFFTLNGRMVGYAFEAVDAARRWHPVVGIDGPAPVRVNFGSDAREPFAFPLARF 364

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BLAST of mRNA_P-littoralis_Contig2.119.2 vs. uniprot
Match: T0R5T8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R5T8_SAPDV)

HSP 1 Score: 95.1 bits (235), Expect = 2.420e-17
Identity = 63/182 (34.62%), Postives = 84/182 (46.15%), Query Frame = 1

Query: 1090 YFEITLERMVAPLEQPQGEEFDLEQCVAIGLANDSFDLDGKQPGWDRHSWGFHSDDGCLHHRGFINVANPTTFGPGDTVGCGLLYPRGCGASVRRVFGRTIRWPSGVSAGGSGDGAIFFTKNGRFLSVAFHGVDVKRS---LYPCIGLDSHCCVTANFGSKAFAFDVPTFEACFTGAAPKLA 1626
            Y+E+T+     P+  PQ        CV++GL N SF L G QPGW RHS+G+H DDGC  H      A    F  GDTVGCGL++              ++   S +         I +T NG  +     G  V+ S   +YP +G+DS   V  NFG   F +  P  +A F G    LA
Sbjct:  168 YYEVTIG--AEPMINPQRPFLHDRHCVSVGLCNKSFRLKGAQPGWRRHSYGYHGDDGCFFHASARGEAFGPAFSSGDTVGCGLVH--------------SVHAESHI---------IIYTLNGAVV-----GRPVECSTPTVYPVVGIDSPFAVRFNFGQVPFRY--PHMDALFAGTEAVLA 317

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BLAST of mRNA_P-littoralis_Contig2.119.2 vs. uniprot
Match: A0A067CPC2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CPC2_SAPPC)

HSP 1 Score: 92.0 bits (227), Expect = 2.860e-16
Identity = 62/184 (33.70%), Postives = 85/184 (46.20%), Query Frame = 1

Query: 1066 FFHAGHTA--YFEITLERMVAPLEQPQGEEFDLEQ-CVAIGLANDSFDLDGKQPGWDRHSWGFHSDDGCLHHRGFINVANPTTFGPGDTVGCGLLYPRGCGASVRRVFGRTIRWPSGVSAGGSGDGAIFFTKNGRFLSVAFHGVDVKRSLYPCIGLDSHCCVTANFGSKAFAFDVPTFEACFTG 1608
            F+  G T   YFE+T+     P+  P+   F+L++ CV++GL N SF L G QPGW RHS+G+H DDGC  H      A    F  GDTVGCGL++     A                         I +T NG  +        +  ++YP +G+DS   V  NFG   F +     +A F G
Sbjct:  169 FYMVGLTCDNYFEVTIG--TEPMINPR-RPFNLDRHCVSVGLCNKSFRLKGAQPGWRRHSYGYHGDDGCFFHASARGEAFGPAFSSGDTVGCGLVHSIHTNAH------------------------IVYTLNGAVVGRPV--ACLSPTVYPVVGIDSPFAVRFNFGQAPFQYQ--HMDALFAG 321

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig2.119.2 vs. uniprot

BLAST of mRNA_P-littoralis_Contig2.119.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JJI9_9PHAE	1.880e-174	53.02	SPRY domain-containing protein (Fragment) n=1 Tax=...	[more]
D7G760_ECTSI	6.810e-112	42.60	SPRY domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A835ZEA9_9STRA	4.840e-21	42.11	B30.2/SPRY domain-containing protein n=1 Tax=Tribo...	[more]
A0A7S4S3F7_9STRA	1.080e-20	38.93	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
A0A7S4S4K4_9STRA	1.230e-20	38.93	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
A0A5A8DVX2_CAFRO	3.400e-19	40.12	Uncharacterized protein n=2 Tax=Cafeteria roenberg...	[more]
A0A1E7FVL0_9STRA	1.150e-18	38.41	SPRY-domain-containing protein n=1 Tax=Fragilariop...	[more]
A0A813CPA2_9DINO	1.430e-18	39.53	Ranbp9 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=...	[more]
T0R5T8_SAPDV	2.420e-17	34.62	Uncharacterized protein n=1 Tax=Saprolegnia diclin...	[more]
A0A067CPC2_SAPPC	2.860e-16	33.70	Uncharacterized protein n=1 Tax=Saprolegnia parasi...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig2	contig	P-littoralis_Contig2:548643..555621 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D7G760
PFAMs	Ank_2,Ank_3,CLTH,SPRY
Model size	2062
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
Exons	8
Evalue	1.12e-112
EggNOG OGs	KOG1477@1\|root,KOG1477@2759\|Eukaryota
Ec32 ortholog description	SPRY domain
Ec32 ortholog	Ec-01_010930.1
Description	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
Cds size	2061
COG category	F

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig2.119.2	prot_P-littoralis_Contig2.119.2	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig2 548643..555621 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789959.5071273-CDS-P-littoralis_Contig2:548642..549090	1680789959.5071273-CDS-P-littoralis_Contig2:548642..549090	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig2 548643..549090 +
1680789959.5183418-CDS-P-littoralis_Contig2:551460..551578	1680789959.5183418-CDS-P-littoralis_Contig2:551460..551578	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig2 551461..551578 +
1680789959.5327194-CDS-P-littoralis_Contig2:551668..552307	1680789959.5327194-CDS-P-littoralis_Contig2:551668..552307	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig2 551669..552307 +
1680789959.5429535-CDS-P-littoralis_Contig2:552637..552782	1680789959.5429535-CDS-P-littoralis_Contig2:552637..552782	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig2 552638..552782 +
1680789959.5540025-CDS-P-littoralis_Contig2:553035..553182	1680789959.5540025-CDS-P-littoralis_Contig2:553035..553182	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig2 553036..553182 +
1680789959.5642664-CDS-P-littoralis_Contig2:553969..554113	1680789959.5642664-CDS-P-littoralis_Contig2:553969..554113	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig2 553970..554113 +
1680789959.573153-CDS-P-littoralis_Contig2:554894..555137	1680789959.573153-CDS-P-littoralis_Contig2:554894..555137	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig2 554895..555137 +
1680789959.5855267-CDS-P-littoralis_Contig2:555444..555621	1680789959.5855267-CDS-P-littoralis_Contig2:555444..555621	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig2 555445..555621 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig2:548643..555621+
coding sequence from alignment at P-littoralis_Contig2:548643..555621+

protein sequence of mRNA_P-littoralis_Contig2.119.2

>prot_P-littoralis_Contig2.119.2 ID=prot_P-littoralis_Contig2.119.2|Name=mRNA_P-littoralis_Contig2.119.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=687bp
AVSSTAAAAGTSNGYTRTNTHDHEGQNTMALRMRQRSPSGESDDAGRQHS
SDTHNKGGRNSPSHEHHQCLPKQQARPLEAVPTPVLLIASEWLAVADLLT
LGTVDRSFRGLTKDETLWKAAAHHLWKSALLEGNTLCVDIDEAGLKDVTA
NVALQDICRCMVGAWPTHIDLGLRGDEFLQGLVDGVLQAGGGGGGGGGGG
GGGGGDTPAAAWAELCTGVVFRGRLGGDRAVRANLPFPWMGTMHRLSSST
TFEPDEEAFSFGCVVKTSLSRHDPLQRTLYPDTFLARVKADAPFASLWPG
HAVATSLEDVSRAPAEVDRGSGGGGGATGNAAAGSDQSEELQLERKRVPS
SGPTPFFHAGHTAYFEITLERMVAPLEQPQGEEFDLEQCVAIGLANDSFD
LDGKQPGWDRHSWGFHSDDGCLHHRGFINVANPTTFGPGDTVGCGLLYPR
GCGASVRRVFGRTIRWPSGVSAGGSGDGAIFFTKNGRFLSVAFHGVDVKR
SLYPCIGLDSHCCVTANFGSKAFAFDVPTFEACFTGAAPKLAEADDYTAA
IRMVYSRGNGFTNPRLLCPYIRFAREEMEEDVDENSVACSGTLASSQGRR
DWPELGSLASESEILRQSLKLFRRGEKLEVEEDQEEDEWLGAWEGIEGEW
DTGEEEEEEEEEEEEEEEEEEEGEQEEDDKQEEHEKK

mRNA from alignment at P-littoralis_Contig2:548643..555621+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig2.119.2 ID=mRNA_P-littoralis_Contig2.119.2|Name=mRNA_P-littoralis_Contig2.119.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6979bp|location=Sequence derived from alignment at P-littoralis_Contig2:548643..555621+ (Pylaiella littoralis U1_48)
GCTGTATCTTCTACAGCCGCCGCTGCGGGCACGAGCAACGGGTATACACG
TACAAACACGCATGACCACGAAGGACAAAATACTATGGCGCTTAGAATGC
GGCAGCGTTCACCGTCTGGTGAAAGCGATGATGCTGGGAGACAGCACAGC
AGTGATACACACAACAAGGGGGGCAGAAACAGCCCTTCACATGAGCATCA
CCAATGCCTCCCGAAACAACAGGCAAGGCCCTTGGAAGCGGTTCCAACGC
CGGTTCTTCTTATCGCATCCGAGTGGCTCGCAGTCGCTGATCTTCTCACC
CTTGGAACGGTAGACCGCAGCTTCAGAGGCTTGACTAAGGATGAAACGCT
TTGGAAGGCGGCTGCGCACCATCTGTGGAAGTCGGCATTGTTGGAGGGGA
ATACCCTTTGTGTTGACATTGATGAAGCAGGTCTCAAAGACGTCACAGGT
GGGTCATTGCATACCGTATCCGTTCGGGTGGGGGCAGCAGCCGGGTTCAG
ACTTTAGAGGGTTTTTATTCACTTGTGTTTACTCTGCGAGCATGCGTGCA
TGGCTCGCATGTGTCGCTGTGTACACTGTGATGCCCAGCAATGGTACGAG
GCAAACGATTTTGTGCGCAGCGTCTATCATACGGACACAACACTGCCAAC
TTGAGATGGTGTGAGCTCTGTGCTATCTAGCGGAAAGATTGATTCCGCCG
CCCCTCGACTACGCGGGTGCCTTCATCCCCTTATCATGCCCTATATGGAG
GACGGTACTGCATCCGCATTCGTGCAGTAACAAAAACACCTCCCAGAACC
CATCACCAACACATGTACTTCGACGTACATATGTACTCGTATGTGATCAT
ATCACACATATGCTACATGCATGGACCTTTTAACCCTTTTGGGCCTTCAG
ATGGAAAAATCGGGCATCAGAATCGGCATACCCTGGTATATATTTTTTTG
TTCCAGCCCGGTCTACTTGGATTCTGGAATCATGAACACGTGAACACGTC
TGTGAATGCACCGCACTTCCGGGAAACAGCATGCATTAGCTTCTCCATCT
GGCAGGGCTTTGATGAACGAGACGAATTGGTTGTAGCAGGCGATTGTGCC
GCCCCCCGTGTAGGCGGTAGCGTCAACCGCGGGAAGGACAAGACATGGTT
GCGTTCTCTACGAGAGCCTTCACCAGGCAGCAGCAGCAGCAACACCAGCA
ATGGGTACTCTAAAGAGGCCGAAGGCCTCCACACCCAGGGGATTAGAGAA
TTACAGATACAGGAAAACCTTCAACCGGGAAAAGTCGGGCATTATTTCCG
GGCAATTGAATGATACTTGAAATAGACAGCATGGGCAAACACACCGGAAC
CAGGGATCCAGCATGCTACCTCTGCCGGCTAGTAATAGCGACCGGGCTAT
CCTTCCTAACCCATCGAGCCTATCGCGGGCCTTTGCCGTGGCCCCTGTGT
ATTTTTAGCTCGTGCCATGGCTGCTGTGCTGCTGCAATTCTCGAGGCAAT
CTACAGGATCTCATTTTTTTTGGAGGCAATGCGCGGCGAGATTACACGAA
ACGGCACCCTTTTGCCCGACAAAAAAAAAAGAAGCAGACTACTCGACTAG
CCACCTGCGTGAGCAGCCTAGTCCCAGAGGGGTTAAACCGCGAGATGCAA
ACAACAACACAAACATGTCTTCCAACCTCCCATAACCCATGACTCTAAAG
CCCCGAACCCGAAGAACAGCTCAAGTGCTGCAGCTTGGCGGATTGGCTAG
GATGCTGTAGCTTAGCGGAATGGCGAGGGTGCTGTTGATTGATAAATTGG
CTGCATCATTCTATTTCTCGGGCTTTCTACGTTTGCTTTCTGCTTCTCGG
CCGTTTCGTACTTGAAAACCTGCTGCCTTTGTCTACGCCATTTGAACGAA
CTGCCCCCATTTTGGTATTTTTGTCGCTCCCTCGGTCCTGGGTTCCAGAA
GGCTTCTTGTTGATGGCGAGGCGTACCGTAATTTTGTACTGCACTAATGC
GGACGCAATACCGTCCTGCGTATAGGGGCTCTCTACCGTGCACAACTGCA
TACTCTGAGTCATACAAATGCTCTAAACCTATCGTTCGTGACACAAAACT
GCTTCCAAATCGTTTTGTTCAGCCTGATAACCTCCGGGGAGCTGCAACGG
TATACGTACTTTATTTGATTTATCATAGTGGCACAAACACAGACAGGTAC
ACAGATATTCTATCATGTTCTAAGGTGGTACACACCTAGACCGAGTGGAA
AGTTGGCGCGAGGATTTAATCGTCGGCTCGAAAGTCAATGAGGGACAGAG
AAAGCCAGAAAATTATCTAGATACAAATTGAGGCACGCACCGAACGAAGA
AGGAAGGTGGAGAAGAAAAAAGAGTAAAAATTTTGTGTTGAACTTCCTCC
TGTGCGACCCCGGCTGGTGCGCCCGCGTGTTATGTACCTGAAGGTGCAGA
CTCACGTCCAGAAATGGCGGGGATGACAACACATACTCACACACAAGACA
CCCGTAGTGTAGAAACACACCCTTTTCTCTGAGGTCAACGCAGGGGCACA
TGTACGACATACGTATGTATGTATCGGCGTCGAACGTAGACAAAACTAAG
GACGCAGCCGCGGTGGATGCACTCGAATCGTTGCGTTCGAAGAAAGTGTA
CGGTCGAGAGCATTCACCATGTTGAAGTCACTGCCGATCTCTCGAAGTTT
GACCAAAATATTTTGTCATGTGCAGTCTTTGGGGGTCGTTTGCATCCGTT
GGGGAAGCAGAACTCCACACCATCCTATCCCCTTGTTCCTCCGCCACCCC
GTCCCCCTCTCCTTGCAGCCAATGTGGCCCTGCAGGACATTTGCCGTTGC
ATGGTGGGAGCATGGCCAACACATATTGATCTGGGTTTGCGAGGAGACGA
ATTTCTGCAAGGTCTGGTTGACGGCGTGCTCCAGGCGTTTCCAGGTAAAG
CATTGCCTTCTCTCTCCGTCAACAGCGCTGGTGCGACCCCTGGCAGCGAT
GGCGACGGTGACGGTGACGGTGGCAGCGGTGGTGGTGGTGGTGGTGGTGG
TGGTGGCGGTGGCGGCGGCGGCGGCGACACTCCTGCAGCAGCCTGGGCAG
AGCTCTGCACTGGCGTTGTGTTCCGGGGGCGGCTTGGAGGAGACCGCGCT
GTCCGCGCCAACCTGCCGTTTCCCTGGATGGGTACCATGCACCGGCTCAG
CAGTAGCACGACCTTCGAGCCCGACGAGGAAGCCTTCTCCTTCGGCTGCG
TTGTCAAAACGTCGCTCTCGCGGCACGACCCCCTCCAGCGAACGCTGTAC
CCCGACACTTTCCTAGCGCGCGTCAAGGCCGATGCACCGTTCGCGTCGCT
TTGGCCCGGGCACGCTGTTGCCACGAGCCTAGAAGACGTTAGTAGAGCCC
CCGCCGAAGTGGATCGCGGCAGCGGCGGCGGCGGCGGCGCGACTGGCAAT
GCTGCCGCCGGAAGTGACCAGAGCGAGGAGCTACAGCTCGAGCGCAAAAG
GGTGCCAAGTTCAGGCCCCACGCCCTTTTTTCACGCAGGCCACACAGCTT
ACTTTGAGATCACCTTGGAGAGAATGGTGGCACCGCTGGAGCAGCCGCAG
GGCGAAGAGTTTGATTTGGAGCAGTGTGTAGCGATCGGCCTGGCGAACGA
CAGCTTCGACCTTGAGTGAGTGCGTCAACCAAACGCCAAACCAACACATG
AGCGCGCGCCCGTGTGTTGTTGATGTCATTCGCCCTAACATTGTCTGCTT
TTGTCCCTGTCGTAGTGCTCGTCCCGGTAGCATTGGGCTGAGGTCGTAGG
CTTTTCGATCTGTTTCTCTCCAGGCGCAGGCTATCCAGTCGCCTGGAACT
ACCGAAGCAGTCGCCGCATTCATGGACAAAGGCTCACCGTCGCGACCACG
TACAGTAATGTGCAAGTACACTGTATGCCCTTAACGTGTGCCCGGCTCTG
TTTCGTATCTCCTTCATGCTATGTGGCGTTTTGATGAGGAAATAGCGGGA
AACAGCCTGGTTGGGACCGCCACAGCTGGGGATTTCACTCTGACGACGGC
TGCCTTCACCATCGCGGCTTCATAAACGTTGCCAATCCTACAACATTCGG
CCCCGGCGACACTGTTGGCTGTGGCCTCCTGTACCCGCGGGTGAGACCAT
GCCCTTGGCGCCAGCTTACTGTTGGTGTGTGTGAATGGTTTCAAATATCA
TGCGTTGGCCGGTCGTGCTCGCTGTTGTGTGCTTGTTGCAGGGAATGCTG
CCAATATGTGTACCTGGTATGCCATAACAGCCCTTTTTTTATTTGTAACA
ATCTTACCCACGGCAATCCTGATGTTACTTACGCAAGCCCCGAAGAGAAT
CCGACCATAAACACGGCAGCTTCTTCTTGTTTCTTACACGCAGGGGTGCG
GTGCTTCTGTTCGTCGGGTGTTCGGCAGGACCATCAGGTGGCCTTCAGGC
GTTAGCGCTGGCGGCAGTGGTGACGGAGCGATTTTCTTCACCAAGAATGG
CCGATTTCTATCGGTGGCGTTCCATGGGGTCGATGTGAAGGTGTGCAGCG
CATCTTCGAAGTATATCACAGGAGATCCATGCCTAATTTTATCATAAACG
CACAGCAGTGTGTGTGTGTCTTTTGTTATCTCATCTATTCTGGACGCCAG
TCTACACCTTGAGGTAAATGTGAGCGCACGAGCCGGGGGTCACAACAGGC
GGGGAAAACGGTCAACACAAGAGTTTGTACTTTTCTCCACCTTCTTCTTG
TGGTGCTTGCCTCAATTTTCATCGAGAGGAGAAGGGTCCGGCCGTCTCTT
TCCCTCGTCGCCTTTTTCGAGTCGATGATTTTTGTTCTCGCTTCCCACTC
CAAGGATTGACGCATGTGAGGGAAAACCCGACCTGAATTCGAACCCACGA
CCTAGGTTTCAGGTTTCAAGAGATAATCGAGGATACACCCTGAACCAACG
AGGCGACCGGCTGACGACAAATTAATTTAGTCAAGTTCCCCCCGTGTGTC
AATCACGTTGCGACTCTTTTTTTTTGCTTTTTTAGTTACACAACAACAAC
GACAAAAACTCCTGTGTGACCGTCCTTCTGCGTCACGTGTGACCCCGGCT
AATTCACGTGCCCACTTCATACCGAAAGGTGTAGACTGGTGCCCAAAATA
TATTCGATGTAAACACGCACACACACGCATACACACGCACGCACACCGCA
AGATCGACCGACCATGTGACACTTTTGTCGAGACAACGCCTTGTCGCCTT
CCCTGACGTCGTCGCCGCTTCTGCCCCTGCCCGGCCCCTCCCCGCCCCGT
TTCTCTTTCCCCGACCCCCGTGAACAGAGATCGCTCTACCCGTGTATCGG
GCTAGATAGCCATTGCTGCGTGACGGCCAACTTCGGCTCGAAAGCTTTTG
CCTTTGACGTGCCCACTTTCGAGGCGTGCTTCACTGGCGCGGCCCCGAAG
CTGGCCGAAGCTGACGACTACGTAAGACCTTCGCTCGCCTATACCGAGTG
GCATTACCTTTTCGTGGAACAGGAACGGGTGTTGCGGGAGGTAGACTTTG
GAGTGTGAGGACACCTCTGCTCCTCAGTTTTTGCGCCATCATGGGACCCA
CGACTCAATGGTCAATTGCTATCATGCCCTCTCCACACCGCAAGGAGTCG
TAGCAGTTTGTTTCGGTTCGGAAAACGCCAAGATTATTAATTGGCGCGCT
TGTACCTCGGTGAGTGATTTGTGCTCGGTTGCGTGTGCCCCGTGTGAGGG
GAGCACGGTTTATTTCGGGTACCGTCGGAACAAAAGCAAACGCGTGCGCT
CTTGAGAGCGCACGTTTTTCGCTGGCGACATCGTGAGCACAAGCTACCCG
TTTGTTGTGCAAGTGGGGTGTGGCATCTTTGCTTTGGTTGACGCGGTTTG
AGTAGGCATGAGTCGTGGTACCCCGCCGCACCGGTAACACGCAATGATAT
CTTTCCCCCTGCTTGCTGTCATGCCGCGTTTCTCGTCTTGCGATTTTCGA
TCTCATGGCGTGGATGCCCTTGAAAACTAAAGGAACGAGAGATCGGTATC
CTGATTTGAGCGTTTCTCGTGTGCTCTAACCTCCCCTCTGTGTGCATGGT
TCAGCAGCCCGTGGTCCGCACAACACGTCCTCTAGGCACCACGGTTCTTG
ATTTCACACGTGCATCGCCTCCTTGGTGCTATGATAACTTCTTGATTTTC
TGCTCTTTGCTTTCTTCTCCCACGTCGACACACGGCCGTGTATGGTTCAC
AGACGGCCGCCATACGAATGGTGTATTCGAGGGGAAACGGTTTCACCAAT
CCCCGGCTCCTGTGCCCGTACATCCGATTCGCCCGTGAGGAGATGGAAGA
AGACGTTGACGAGAATTCTGTGGCGTGCAGTGGCACTTTGGCGTCAAGCC
AAGGAAGGCGTGATTGGCCTGAGCTGGGGAGTCTGGCCTCGGAAAGCGAA
ATTCTACGGCAATCCTTGAAGCTCTTTCGGAGGGGTGAGAAATTGGTGAA
AGAGAGATTGTTACATGCGTTACAGAATAAGTGGCGCTCGCACTGCGGGG
ACAGGGGGTCAGCGTAAGCTTTTGTACACCCCGGGTCTGAAGGACCCCAG
AAATCTAGAGGTGCAACCAGACCACTGCGGCTGGCAAAAAGATCACCAGC
TTCCGACATCAGCTGACGAGAGTTTCAATTTTCTGCTTTGCTGTGTACAC
GCATGTACCGCTGTCGCTCTTGCAGTACATCGACTTTCGCGGTACGGTAT
AGGCGCTCACGACCTGTGGTTGTCCACGGATGAGTCGGAGGAGGAGGAAG
AGGAAGTGGAGGAGGATCAGGAGGAGGATGAGTGGCTGGGGGCGTGGGAG
GGGATTGAGGGGGAGTGGGACACGGGGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGCGAGCAAGAGGAGG
ACGACAAGCAGGAAGAGCATGAGAAGAAG

Coding sequence (CDS) from alignment at P-littoralis_Contig2:548643..555621+

>mRNA_P-littoralis_Contig2.119.2 ID=mRNA_P-littoralis_Contig2.119.2|Name=mRNA_P-littoralis_Contig2.119.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2061bp|location=Sequence derived from alignment at P-littoralis_Contig2:548643..555621+ (Pylaiella littoralis U1_48)
GCTGTATCTTCTACAGCCGCCGCTGCGGGCACGAGCAACGGGTATACACG
TACAAACACGCATGACCACGAAGGACAAAATACTATGGCGCTTAGAATGC
GGCAGCGTTCACCGTCTGGTGAAAGCGATGATGCTGGGAGACAGCACAGC
AGTGATACACACAACAAGGGGGGCAGAAACAGCCCTTCACATGAGCATCA
CCAATGCCTCCCGAAACAACAGGCAAGGCCCTTGGAAGCGGTTCCAACGC
CGGTTCTTCTTATCGCATCCGAGTGGCTCGCAGTCGCTGATCTTCTCACC
CTTGGAACGGTAGACCGCAGCTTCAGAGGCTTGACTAAGGATGAAACGCT
TTGGAAGGCGGCTGCGCACCATCTGTGGAAGTCGGCATTGTTGGAGGGGA
ATACCCTTTGTGTTGACATTGATGAAGCAGGTCTCAAAGACGTCACAGCC
AATGTGGCCCTGCAGGACATTTGCCGTTGCATGGTGGGAGCATGGCCAAC
ACATATTGATCTGGGTTTGCGAGGAGACGAATTTCTGCAAGGTCTGGTTG
ACGGCGTGCTCCAGGCCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGT
GGCGGCGGCGGCGGCGACACTCCTGCAGCAGCCTGGGCAGAGCTCTGCAC
TGGCGTTGTGTTCCGGGGGCGGCTTGGAGGAGACCGCGCTGTCCGCGCCA
ACCTGCCGTTTCCCTGGATGGGTACCATGCACCGGCTCAGCAGTAGCACG
ACCTTCGAGCCCGACGAGGAAGCCTTCTCCTTCGGCTGCGTTGTCAAAAC
GTCGCTCTCGCGGCACGACCCCCTCCAGCGAACGCTGTACCCCGACACTT
TCCTAGCGCGCGTCAAGGCCGATGCACCGTTCGCGTCGCTTTGGCCCGGG
CACGCTGTTGCCACGAGCCTAGAAGACGTTAGTAGAGCCCCCGCCGAAGT
GGATCGCGGCAGCGGCGGCGGCGGCGGCGCGACTGGCAATGCTGCCGCCG
GAAGTGACCAGAGCGAGGAGCTACAGCTCGAGCGCAAAAGGGTGCCAAGT
TCAGGCCCCACGCCCTTTTTTCACGCAGGCCACACAGCTTACTTTGAGAT
CACCTTGGAGAGAATGGTGGCACCGCTGGAGCAGCCGCAGGGCGAAGAGT
TTGATTTGGAGCAGTGTGTAGCGATCGGCCTGGCGAACGACAGCTTCGAC
CTTGACGGGAAACAGCCTGGTTGGGACCGCCACAGCTGGGGATTTCACTC
TGACGACGGCTGCCTTCACCATCGCGGCTTCATAAACGTTGCCAATCCTA
CAACATTCGGCCCCGGCGACACTGTTGGCTGTGGCCTCCTGTACCCGCGG
GGGTGCGGTGCTTCTGTTCGTCGGGTGTTCGGCAGGACCATCAGGTGGCC
TTCAGGCGTTAGCGCTGGCGGCAGTGGTGACGGAGCGATTTTCTTCACCA
AGAATGGCCGATTTCTATCGGTGGCGTTCCATGGGGTCGATGTGAAGAGA
TCGCTCTACCCGTGTATCGGGCTAGATAGCCATTGCTGCGTGACGGCCAA
CTTCGGCTCGAAAGCTTTTGCCTTTGACGTGCCCACTTTCGAGGCGTGCT
TCACTGGCGCGGCCCCGAAGCTGGCCGAAGCTGACGACTACACGGCCGCC
ATACGAATGGTGTATTCGAGGGGAAACGGTTTCACCAATCCCCGGCTCCT
GTGCCCGTACATCCGATTCGCCCGTGAGGAGATGGAAGAAGACGTTGACG
AGAATTCTGTGGCGTGCAGTGGCACTTTGGCGTCAAGCCAAGGAAGGCGT
GATTGGCCTGAGCTGGGGAGTCTGGCCTCGGAAAGCGAAATTCTACGGCA
ATCCTTGAAGCTCTTTCGGAGGGGTGAGAAATTGGAAGTGGAGGAGGATC
AGGAGGAGGATGAGTGGCTGGGGGCGTGGGAGGGGATTGAGGGGGAGTGG
GACACGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAAGAGGGCGAGCAAGAGGAGGACGACAAGCAGGAAGAGC
ATGAGAAGAAG