mRNA_P-littoralis_Contig1.146.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.146.1
Unique NamemRNA_P-littoralis_Contig1.146.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1.146.1 vs. uniprot
Match: A0A6H5KEY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.980e-11
Identity = 72/180 (40.00%), Postives = 80/180 (44.44%), Query Frame = 2
Query: 1034 GTEGGDPDLDWAMSKEWEDHLRKSPSVQRYLQRVQAKLSTWKGQRGG----------------------KKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAHTPAPSSSECAVA---------------------AAKQALDLELAKIQAQALLYAEEQQHRQLEDALVTP 1444
            G EGGDPD  WAMS EWE++LR SP V RYL+ VQAK  TWK  RGG                      K N                        X XXXXXXXXXX    P                               AA +ALDLELAKI+A ALLYA++QQHR LEDA+  P
Sbjct:  291 GEEGGDPDQGWAMSAEWEEYLRNSPGVSRYLEGVQAKAYTWKDGRGGSXXXXXXXXXXXXXXXXXNTSDKSNSSGIVAADLDPTTTTDNRGYTNTNXKXXXXXXXXXXXGKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASRALDLELAKIKAHALLYAQQQQHRPLEDAMAAP 470          
BLAST of mRNA_P-littoralis_Contig1.146.1 vs. uniprot
Match: D8LNC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC4_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.500e-10
Identity = 70/171 (40.94%), Postives = 82/171 (47.95%), Query Frame = 2
Query: 1034 GTEGGDPDLDWAMSKEWEDHLRKSPSVQRYLQRVQAKLSTWKGQRGGKKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAHTPAPSSSECAVA----------------------------------AAKQALDLELAKIQAQALLYAEEQQHRQLEDALVTP 1444
            G EGGDPD  WAMS EWE++LR SP V RYL+ V AK  TWK  RGG   XXXXXXXXXXXXX                         +    ++ +                                      AA +ALDLELAKI+A ALLYA++QQHR LEDA+  P
Sbjct:  282 GEEGGDPDQGWAMSAEWEEYLRNSPGVSRYLEGVPAKAYTWKDGRGGGXXXXXXXXXXXXXXXGSSTSDNGSSSGIVAADLDPTMTTDNRGHTNTKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASRALDLELAKIEAHALLYAQQQQHRPLEDAMRAP 452          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEY8_9PHAE2.980e-1140.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNC4_ECTSI1.500e-1040.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:849695..859794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2395
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004380.1
Cds size1383
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.146.1prot_P-littoralis_Contig1.146.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 850631..859718 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789314.7562084-UTR-P-littoralis_Contig1:849694..8506301680789314.7562084-UTR-P-littoralis_Contig1:849694..850630Pylaiella littoralis U1_48UTRP-littoralis_Contig1 849695..850630 -
1680789314.804012-UTR-P-littoralis_Contig1:859718..8597941680789314.804012-UTR-P-littoralis_Contig1:859718..859794Pylaiella littoralis U1_48UTRP-littoralis_Contig1 859719..859794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789314.7657914-CDS-P-littoralis_Contig1:850630..8509351680789314.7657914-CDS-P-littoralis_Contig1:850630..850935Pylaiella littoralis U1_48CDSP-littoralis_Contig1 850631..850935 -
1680789314.7739418-CDS-P-littoralis_Contig1:851490..8515201680789314.7739418-CDS-P-littoralis_Contig1:851490..851520Pylaiella littoralis U1_48CDSP-littoralis_Contig1 851491..851520 -
1680789314.7852855-CDS-P-littoralis_Contig1:853336..8542991680789314.7852855-CDS-P-littoralis_Contig1:853336..854299Pylaiella littoralis U1_48CDSP-littoralis_Contig1 853337..854299 -
1680789314.7935588-CDS-P-littoralis_Contig1:859633..8597181680789314.7935588-CDS-P-littoralis_Contig1:859633..859718Pylaiella littoralis U1_48CDSP-littoralis_Contig1 859634..859718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.146.1

>prot_P-littoralis_Contig1.146.1 ID=prot_P-littoralis_Contig1.146.1|Name=mRNA_P-littoralis_Contig1.146.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=461bp
MNPARGGFDLRRYHGFRNPPVQPPFPFPGTSGTWQRGSWGNSCDDHPQEA
AAAAAAAAAAFQFRRAPGPWRWQETEPHRCRQRRAPTGGGGGTDTSVPRG
RNGGGPKGSVGGEPAVAGAAAAAAAAAAAEEEEEEALPVAVAVAVGEGIS
PRLTQCKQNNVVEGGAGGAFNAAAATAAAEPVNEPAHQYLLHEGEGDERG
QGEEEDTAAVIGEAQERTTSTGISANAAATAAVAAPAGGQCHPENAARMG
FGAIAQGAVAAPFSGGGGGSRTGEARGAAAGVAAPAVRISQQRGGIVGDR
AEVVMVVPGGEEEEDEEDDGTEGGDPDLDWAMSKEWEDHLRKSPSVQRYL
QRVQAKLSTWKGQRGGKKNRNNKPQQQRQQQDALGGKARGQKNKKKNKKS
SSKEEDAHTPAPSSSECAVAAAKQALDLELAKIQAQALLYAEEQQHRQLE
DALVTPAPFD*
back to top

mRNA from alignment at P-littoralis_Contig1:849695..859794-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.146.1 ID=mRNA_P-littoralis_Contig1.146.1|Name=mRNA_P-littoralis_Contig1.146.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10100bp|location=Sequence derived from alignment at P-littoralis_Contig1:849695..859794- (Pylaiella littoralis U1_48)
CACTGCACAAAGAAGCAGCATACTCAAGAACAGTCAAAAACAGCCACAGC AGTGAGCGAGGGGACCAAAGGCTAGCATGAATCCTGCGCGTGGTGGATTC GACCTTCGACGGTATCATGGCTTCAGAAACCCTCCCGTCCAGCCACCGTT CCCGTTTCCAGGTGAGACCTCTAGTAGACATATTGATACCTATCTGATAC CTGGTACTTGATACCGTATTATATACGTTATAAATTATACGATACCTATC TGATACTTCGAAGTACTGCTCTTACGGGTCATGTTCTTTGATTTTTTTAT TTTTCTCCATGAAAATCAATTTGGACAGCAAGGAAAGTAATACAAGCATC ATATCATATACCTGGTACCAGGGAGGTATCATATCGTATACTGCTGTATA TACAAATAGAAGTTGTGGGCACAAGTGTACGGCATCAGCAACAGAGTATA ATTGCTCTTCGGGCGACATCATCACCACCAGCGTCGCGAGGACGGCATGG AGACACCACATCCTCGACAATATCTGATATCTGATGATACGTGTCTGTTT TTTCTCTTTCTGCCTTGTCCGATTACCGGGGCTGCCTGTACGTTGTAGGC AGCACTCCAGACAGCAACTGCTTACAGCATTGGTAGTGGCTATTAGTTTT AAGTGGGGCGGGAGGAGACTGAACACGATGTTGTAGTCAAATGAATCACC GCTGGAAGCGTTTGCTGTTGGTGCTGCTGTGACCGGTGTAGTTCAGTGAT GCACACCACGTTGGAATGTGGATCTTCCTCGGTCTTCTTGGGCATTCCCC TGTAGTTTCCTTCTGTTTTTTGGATCTTCCTAGGGCTCAGCACTTTTTGT GACCCCGGGCTGGATTTTGGCGATGAGCTAATGTGAGAATCAACAACAAT GCTCTTCGGGTGATGTTCTTTGATTTTTAGATTTTTCTCCCTGAAAATCA AATTGGACAGTATATACACAAATAGAGTTGTGGGCACAAGGGGTCCAACA ACAGCAGTCAACATGATATCGTGTTGAAATACCTTGGACGTTAGGTCACG AGCCTCGTTGCTTCGCAGGAGATAGTGACGGAGGCACTCGGCAGCAATCC CACAGCAATATTGCGGTATTCGTGAGCACAACGGCACATGAGGTACTAAA TTAATTCTGGATCTCACGTCGTTTCTGTTGTTTTTCGTTCCCGTTGTTTT TCGTTCCTCCACGTTGAAATATTTCCGAGGAAAAGACACGTACTGGTATC ATATACTTTGAAGAATGCGTGAAACAACACACGATGTTTACGGCAGTTCT GGTACCACCCACGGCGGTCGTACTGGCACCCAGAATGGGTGGGATGGCAA CACACGTACACAGCGACCCGTCGTGTGCGATGTGATTACAGCCCCTCTCG CTGACACCACATGCAGATGATGCGGCTGGCCTCTCAGCCGCCCCTCTTGA TTTTCTGCGCATTCTTCTTGTAGAACATCGTGACACCTGGTATACGATAT TTGTATATACTCGAGATACGAAGTTGTTGTTGATTCTCACATTAGCTCAT CGCCAAAACCTAGCCCGTGGTCACAAAAAGTGCTGAGCCCTAGGAAGATC CAAAAAACAGAAAGAAACTACATGGGAATACCCAAGAAAGACCGAAGAAG ATACACCTTTCTACGCGGTGTGCATCACTCAACTACAGAAGTCACAGCAG TACCAACATCAAACGTACTTCCAGCGTGGTTATTTTCACTACAGCATCGT GTTCAGTCTCCTCAAGCCCCACTTGTAACTAATAACCTGCTGCTACAAGC AGTCAGTAGGTAGCTGCAGACTACAGCAGTTAGTTGCTGTCTGGAGTGCT GCCTGCAAAGGATAAGTAGCCCCGGCAATCGGAGAAGACAGAAAAAGAAA AAACACAAAACACACACACGGTTCATCAGATGTTGTCGAGGATGGTGTCT CCATGCCGTCCTTGCGACGCTGGTGATGATGTCGCCCTACACATGTCCTC CTTGTCTGGGTCCACGTTGCTACTGGCGTTGCCCAAGGCCACATCACCAG CACCATGCTCAGTACTTCGTACTGACGGTTAGTTTTATCACATCTGATGC GCATCATTACAACAAGTACGTAACTGCTGTACTCGAGCACACAGGGGATG GATACAAGCATCACGCGCTTATCATCTACTTCGTACTTCGAGATATATCC CTCATCGCAGATGGGCAACGGTAGATGGGCAACAGCAGTTAGCTAGATCC CTCGCCCGCTCCATCATCGCCGTGGCAGGCGCAGGCACCGCCACTTTCCT CACACGGCCCCATCCCTCAGGCGCATTCTATTGTCAGACGCTGCTGAGCA AGGACTGAGGTTACAGATGATGTCACACGACGGCGTGCCTTGTACGGCAG CAGTAGTCACATAACGGTCGTATTGCCCTGCGCACAAACGTCCAGAAGAT AGATATTGATTCGACAGGAAAGTACGTAGTAACGGTGTTTTAGCGCGTTT GCGCAGTCCGGAAGTTGGGCTTAGTAAAGAGTCTCAGGTATTGCAGCACT GCTGTTTTGTTGTCTGCAGGCACACGAAAATCTAGTAACGCACAGCCGAA AATCAAACACCACAACAACTACTACGCTAAGGATAATGCTAACAGCACGA ATATAATTTGTAAACACATCTTAATCTGTGGAAACAAACAAGTACTCTGT AGATGTATACCGCGTATCATTCTTTACATACACTTATGTTAATCAACTCA CCAAGGACCCTCATCTGAAGAATAACACTGAATGTACCAGGTATTTATCA AAAATACTATTCGAGCACCTAGTAAAGATAGTAAAAACCCTGAAACCAAC TCGTCGTGCAAATCCAATTAAATCATAAAATATGTATGATATGACCGTAC ACACTCACCACAATGATGTACCGTGTGTCACACAAGACGACTCCCAAATT GTCTTGTTGAGCCTGATATCCTCAGGGGAGTTGCAACGGTATGTTATTTG TTGAGTTGTAGAAAACAAGTAGATGTATAACACTCTGTGTTGGTTGCGAG TCTCGCTGGATCCTCGTCTAGAGAGAGGCGAACACATCGATGTATTTGTC AGAAAAATAAAAATAAACACCCAACATATGATGCAGCAACGTGTGTCACA CAAGACGACCACCAAATTCTCTTGTTGAGCCTGATACCCTCAGAGGGGAG CTGCAACGAACGGTACATTATCTGATGAGTTACTGAAACACTGGTAGATG TTCCTTACTTTCTGCGTTCGTTGCAATACCTACTCTAGACCAGAGAGGCG AACACCACACTGATGTGTTAAGTCAAAAATAAATGGAGTTTTGATTCCCC GGAGGCTCAAAGTCCGGCGTAGCTTTATAGGTTTTGGACTTTCGCAACGT CGAATCAGCGGCAAAACCCAGAGATAAAATCATCGTGTTGCGAGATGAAT CAAGGCAGCTGAACATCTTTGCCGGTGCATATATGTGTGATACGTTGAGT ACTGCAATGTATCATATGATAGGTGTACGATACCACATAACATATACTTC GAAGTATGAAGTAATGTTGCATAGATTGCGAGCAACAAGGAATGTGCCAA AATGTTAGATCGGTGTACTGTTGTAACGGGGTAATTTTTTTATCAACCCG TTAGACCACCCTCACAGCTGAACGGGCAAGCCCCGGGTTACCCCCGAAAT ATTTAGTATTTAGTCCCCGAGATGTATGATGTTGTACAAGTGTGCATGTG GGAGAAGGCGAGATCTAAATTAGCCACACCTTGGTGCGCCTGCTGTCGAT GAACGTCCACAACATAAGTCTAAGAAGGTATAAATATGGTTATTGCTTCG GTGCTACATCGCTTCGCATACAGACAGAACGACAAACGACCCAGTCAATG AGTCGCAGAAGGACTGCTGTATATTTCTTTCAATTCTAAATTCTACAACG TCTTGTATAATACACTAGCTCTTGTTTTGCATCCATTGATACTATTACAA GACCCCGTTCCGGACTGGCCCTCCCTGTAAGCAAGCTGTTGATCTTTGTT TGCATTACGGCTTGAGGGTAGATCTTATCCCACCCCTGGAATAAAAAATC AACCGAAAAACGAAAAGCGAACAGCGAAGGCCAATTTTCGAAAATTACCC TTTTCATCGACCGACGTGGCGCGTCCGTCCTAGAAAGTTCTTCTAAAACT TCGACTTCAAGACAAGGACACTGGCGATGATGTCTTTCTATCAAACGACC CCCAAATTGCCTTGTTGAGCCTGACAACCTCAGGTGGGAGCCGCAACGGT ACATTTTCTGATGAGCCTAGAAACAACACAACAGGTAGAAGTATTAATGC TTCGCGTTCGTCGCTAATCTGCTCTTGATCCTCGTCTTATAGAGAGGCGA ACACATTGACGATGTGTCTATTGAAAAACAAAACAGAACCGGAAAAAAAG CTGCAACGGTACATTTTCTAACTTTGTGTATAGTTGAACAAACACGAATA TGATGCTGCTGTGATCGTTGCTAATGTTCTGTAGATTCTCGTTTAAACAC ATGGACAAAACCACTCTGATGTCTTTGGTCTAAGAAAAAAAAAATGTCCA TGTTGCGAAAATCCGATCCTATTCTCACGAAGTCAAAAATATTAGGTAGC GGAATAGAGCCAGAGAGTGTTTGCGCGCAAACAAGTTTGATTCGCCTAGA ATTATTTTGTTATTAGTACGACAGTACTGAAAACCGCACCACAAGCGGGT TCGAGATTCCACTTCGAAAGGAATTTGAGGAGGGTCAAGCCTGATAACAT CAGGGGAGCTGCAGCGGACGGTTCGATTTTTGATCTGATGAGTCAGAGAA TCACAAGTAGTTTGTTGTATCGCTCTTATCGTTCGCTGCTAGTTTACTCT CGATTATCGTCTAGAGACGAGAGTACCCTGGTGTCTTTGTAAGAAAAAAG ACGAGCATTCGCCAAAGGAGATCTTCGGCCCTGAAACGTTATATTCTAGA CGAAGATACTGATGATGGCTTTACATTCTACACTTTGCGGCGCTCTGATC GCCTACATCCGTTCTCAAATATGTGAGTACATCGCGTGTGACAGAAGCAG GCAAGCGCGGCGGCGATCGAACATGGCAACGGCAGGCAACGAGCGTAGTA TACTTGTATGGTAGCGAAGATTCCCCGCTAAAGAACGCTCGGTTCACAGC CGCTATGATATGACCTTTGTACGTCTGCAAAGCTGCTACATACTCCGTAT TCAAGGTCGGCATGCTCATGATAATTTTGTGAACCATCTGCCTTCGACAG CCAGTTTATTTTTCCTGCCTCCCCGTATCACCTCATATACATACATACTT CGAAGTACATACATACATACATACATACCTTGTATCGACTCAGTCGTAAA CCATAGCAACTCGGATTAAAATATCGTCGAGGTGTGTAAGTGCTACGACT GTGTAAATACGACACATACCGCCTCTTTTCTCCTCGTCGCGCCAGGAACG TCAGGAACATGGCAGCGAGGGTCGTGGGGAAACAGCTGCGATGATCACCC CCAAGAAGCGGCGGCGGCGGCGGCGGCGGCTGCAGCAGCGTTCCAATTCC GCCGTGCTCCGGGGCCTTGGAGATGGCAGGAGACGGAACCGCACCGCTGC CGGCAACGACGCGCGCCGACCGGGGGAGGGGGTGGCACCGACACCTCCGT TCCTCGGGGTAGAAACGGCGGCGGCCCCAAGGGTAGCGTGGGCGGGGAAC CGGCAGTAGCGGGCGCGGCGGCCGCTGCGGCGGCGGCGGCAGCGGCGGAG GAGGAGGAGGAGGAGGCCTTGCCCGTGGCGGTGGCGGTGGCGGTGGGAGA AGGTATTTCACCACGTTTGACGCAGTGCAAACAGAACAACGTGGTGGAAG GGGGCGCTGGGGGTGCTTTCAACGCCGCCGCCGCCACCGCCGCCGCCGAG CCCGTAAACGAACCCGCACACCAATATCTCCTGCACGAAGGTGAAGGAGA TGAGCGAGGCCAGGGCGAGGAGGAAGACACCGCCGCCGTCATCGGGGAAG CTCAAGAGCGCACAACGTCAACAGGTATCTCCGCCAACGCCGCCGCTACC GCCGCTGTTGCGGCTCCAGCTGGTGGTCAATGTCACCCCGAGAACGCAGC AAGAATGGGCTTCGGTGCAATCGCCCAGGGCGCGGTAGCCGCCCCCTTCA GCGGCGGCGGCGGCGGCAGTCGCACGGGAGAAGCAAGAGGGGCAGCCGCT GGGGTTGCGGCGCCAGCGGTAAGAATTAGCCAACAGCGCGGGGGCATCGT CGGGGATAGGGCAGAGGTGGTGATGGTGGTGCCGGGGGGAGAGGAGGAGG AAGACGAGGAGGACGACGGGACGGAAGGGGGGGATCCGGACCTGGACTGG GCGATGTCGAAGGAGTGGGAGGATCATCTCCGAAAGTCTCCGTCGGTGCA GCGATACCGTGAGTCAAAACATGCCACTGCTGTATAATATGGTGCTGGAC ATCTGTCCTACTCCCATGTTGGTGTTCTTGTTCGGCGAATATATGCAGGC GCTCGTACAAATGTAAAACACAAACATTCCAATGGTTGTGTTCAGTTCCT ACGACAGAGCGCTGAGAGCTCGCCATTCCGAGCATTTTCTCGAACTGTAT CTCCATAGCCAAAATATTAGCTGCACGGTACACGTTTTCTCCGCGTGCGC TGTTCCGAAGTGTATGGAGCCGTCCCTGCCAGTCTCGCAGGCTGACCCCG GATGCTCACTGAGCTAACGACTTCGGAAGATCTAGCGCGGATGCGTTCCC GGACCAAAAAGCCTCCGGAGTATATCAGTCCCCGTCGAACTCGTCCTCCG CAAAACACGCGGTACCCTTAGACCCACCCCAGCGCCCGCTTCTGCGCATG GCGAGCAGCGGCGGGACCCCTTCTCTGCTCCTCGTTATCAGCACCCATCT GTCGTTTAGAGACTACCGCTGTGTGGGCTTCGGAAGCGTAGACTGCAATC ACGTCGCGTGTACACGGTTGTGTCGATGCGAAGCAACAGGCCCGTCCGCC AAAAACGGCGCGAACATTTACTTCGGGCTGACGAGCCGGTTCCGCGAAGG CCTAAAATATGCTTCCGTCGATTGTTCTTTGGAGTGCGGTGTGTAGGGAA GTACGCATGCACAGAGGGGCGCGCGCATACGCACGCAGCACGTCGCCGTG GCTTCTATTTCCAGACGTGTGCACAAAAGCCATGCGCCCCAAAAAAGTCT GATGGCTCGTGTCTTCGCAAGTGCACGTACACGACAAGCGAGCTCGCACG CAGCCTTTTCATCTAGGCTACCGCTGTGTGTAAGTCCCTGTCTCCGTGTG ATGCAGAAGCACCAGTTTATTTATTCACAGCAAAGTGTGCTTAGGTGCGC GTGTGCGTGCGTTTAAGTTTCGCCTGCTGTCTGCACATACCTTTCGAAAG ATCTCGATATCCTCCTATCGGCCCGTTAAATACGAATGCGGTGAACCTTG TCCGCTACTTTTTTCTACTTTTTTTATCCTCGGAAGGCAGCAATCAATCA ATCAATCAATCAGTCAGTCGAAATGTGCAATATTATGCCACATTTTTGAA CGTCTGTTTTTCGACACTTTTTAGCATGACACGGGCAGCAGCTGCTCCGT CCACTACGGTTTGTAGGATAAGCCATTCGTGTGTACGCGTCTGTGAGTGA AAGCTGTCGTATATCACGGCGACCGGCGATGAGAGAGTACAACAAATGTT GATGCCCGACGGAAACGGGCAACGCGCAGCAAAGCAGTGCAGTGTTCTTT CTTCATCGTTCGGAGCGAACCGGGACCTTCGCCCCCCTGTTGAGCAGTAG TGCGTCTGTCGCCGTCGCCTTGACTGTCACCGTGATGACCACACGCGATG GTGCTGTTGCTGTTGTTGCGGCCGCGTTGACTCTCACCACGACGATCACG CGTGTTGGTTACGATACAGCAGTCAATTGTGTTTCTGCCGTTTCGAATGA CTAGAGGATTCACGAGTACTGTTTGCATTTTTTTGCTTACGTGTTCCCGT CAAAACGGTGCACATAGCGCTTTTTCGTGTTGCTGGACTGACGATGCGTA CGTGCCTCTTGTTTTTGTATTCCCTGTCTCTCTCTCCCTCTCTGTGTCTC TCTGTCTGATCTGTGTCTCCTTGTCTCTCCATGTCCGTCTTTCTGTCTGT CTGTGTCCGCCGCCCTCTCTCTTGTTAAACCTCTCCGTCCATGTCATCGC GAAACTCTGGTGCCGCGGCTGTAGTCCAACGTGTGCAAGCCAAGCTATCC ACATGTGAGTATTCTTTCTCTTGCTGCTGCTGCTGCTGCTGCTGACGCTG TTGTTGTTGGTGGTGGTGGTGTTCCCTGGCGCCCCCATTTTCTCACGCAA CGGCCACTGCCCTGTCCAGTAGATGAAACCAGCAACGAGTTCCGCACCGT TCGTGTTGAATCGAACAATGCGATCACCTGTGTGAGCACGTTTTGCGATA TCACGTGCATCTTTCCTCTCGCAGAAGCTCGGCAAACATGAGCGCATCGC AAGCAAACGTTCACGAGACGAAGGTTTATATACGTGCACCAAACGCCCGT GCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCATACGAAGTATATATC ATCCCCCTTCCACCCCCCTCGTCTCGCTCTGGCTCTTAAGGTTAATCTCC CTTTCTTCTTTTCCCTCCTTGGTGGTGGTGTGGCCGTTTCCGTCCCCATT CCCGCCCAAACATACTCATCTTTTTTTTTCGACGAAACATCATTTTTATT CCACGGGTAAAACATCATTCCCACACCAACGACACATCAACACGTCAACA CACCGACAGGGAAAGGCCAGCGTGGAGGGAAAAAAAATCGAAACAACAAA CCACAGCAGCAGCGGCAGCAGCAGGACGCTCTGGGCGGGAAAGCAAGAGG GCAGAAGAACAAGAAAAAGAATAAGAAATCTTCTTCCAAGGAGGAGGACG CGCACACACCCGCCCCCTCTTCCTCTGAATGCGCGGTAGCCGCCGCCAAG CAGGCTCTGGACCTAGAGCTGGCCAAGATACAGGCGCAAGCGCTGCTCTA CGCGGAGGAGCAGCAGCACCGGCAACTCGAGGACGCCCTCGTCACCCCTG CGCCGTTTGATTGAATCAAATCATTTTTTTTGTTTTTACATTTTTTTTTC TGAGACCTATGTAGCTGCTGTGCAAAAGAGGCAGCGGCGGCGGAGAGGTT TACAGGAGGGCCGACCAAAATCCTACACCTGAGCGAGAATCTTGCGTGAA GTGGTGGGGCGAAATTTTGCATTTCACATATATACTTCGTATGATTCAAC AGAAAGCAAATGTATCATGGGATACCAGGTACCATATATATTTCGTACGT GAAACGAAAACACTGGACAGATAACTTTTTCAGTCACCTCGAATTCTTTA GCAGCGCATTCGCACGGCGTGCGGATGAGTGTGTGGTGGTGAGGGGGGGG TTGGGTGTGAACAAACGCATAGCGTGTGCATGAAAAAAAAAAAAAACTTC CAGGTGTGGTTTGTGTTTGTCGTCGTATCATACTGTATGAAAAACACATA ATGATGGATCGTTTTTTTTTATCGCCATTTGAGCGGTGCGCGTGCTTGTA TGTACAGCAGCTTGAAAACATTATATTGTATTTTATTACTGGGTGGTTTG GTGGCGTGCTCGTATGTGCCATCTCGTTCGGTTACTTCACCGTTTTTCTA TCCGGGACGTGGACTTGAATGTTTAATGTGCAGATCGGCCGTTTGTTTTG CCATAGATTCACCGGTGCGTGCTTGCTCCGCCGATACACCAACCAACCTG TCTGGTATTTAACATGTCGGTACAGCAGCAGGAAGGGTTTTTGGTGCTTT AGAAGAGATGCATGGGCTATGAGAATAATGGGCTGCGTTGTTTGTCGTTT CATCTTATGATACATGGACACGGTTCTGTTCACCACTTTGTTTTTCATTC GAGGGGCGAGCTTGAGCCTATTTTATACTCCGAAGTACAAGAGAGTATGT CGGTAGGCAGGCAGACAGGCAGGGTTTTGTATTGTATGATAGCATGCGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1:849695..859794-

>mRNA_P-littoralis_Contig1.146.1 ID=mRNA_P-littoralis_Contig1.146.1|Name=mRNA_P-littoralis_Contig1.146.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1383bp|location=Sequence derived from alignment at P-littoralis_Contig1:849695..859794- (Pylaiella littoralis U1_48)
ATGAATCCTGCGCGTGGTGGATTCGACCTTCGACGGTATCATGGCTTCAG
AAACCCTCCCGTCCAGCCACCGTTCCCGTTTCCAGGAACGTCAGGAACAT
GGCAGCGAGGGTCGTGGGGAAACAGCTGCGATGATCACCCCCAAGAAGCG
GCGGCGGCGGCGGCGGCGGCTGCAGCAGCGTTCCAATTCCGCCGTGCTCC
GGGGCCTTGGAGATGGCAGGAGACGGAACCGCACCGCTGCCGGCAACGAC
GCGCGCCGACCGGGGGAGGGGGTGGCACCGACACCTCCGTTCCTCGGGGT
AGAAACGGCGGCGGCCCCAAGGGTAGCGTGGGCGGGGAACCGGCAGTAGC
GGGCGCGGCGGCCGCTGCGGCGGCGGCGGCAGCGGCGGAGGAGGAGGAGG
AGGAGGCCTTGCCCGTGGCGGTGGCGGTGGCGGTGGGAGAAGGTATTTCA
CCACGTTTGACGCAGTGCAAACAGAACAACGTGGTGGAAGGGGGCGCTGG
GGGTGCTTTCAACGCCGCCGCCGCCACCGCCGCCGCCGAGCCCGTAAACG
AACCCGCACACCAATATCTCCTGCACGAAGGTGAAGGAGATGAGCGAGGC
CAGGGCGAGGAGGAAGACACCGCCGCCGTCATCGGGGAAGCTCAAGAGCG
CACAACGTCAACAGGTATCTCCGCCAACGCCGCCGCTACCGCCGCTGTTG
CGGCTCCAGCTGGTGGTCAATGTCACCCCGAGAACGCAGCAAGAATGGGC
TTCGGTGCAATCGCCCAGGGCGCGGTAGCCGCCCCCTTCAGCGGCGGCGG
CGGCGGCAGTCGCACGGGAGAAGCAAGAGGGGCAGCCGCTGGGGTTGCGG
CGCCAGCGGTAAGAATTAGCCAACAGCGCGGGGGCATCGTCGGGGATAGG
GCAGAGGTGGTGATGGTGGTGCCGGGGGGAGAGGAGGAGGAAGACGAGGA
GGACGACGGGACGGAAGGGGGGGATCCGGACCTGGACTGGGCGATGTCGA
AGGAGTGGGAGGATCATCTCCGAAAGTCTCCGTCGGTGCAGCGATACCTC
CAACGTGTGCAAGCCAAGCTATCCACATGGAAAGGCCAGCGTGGAGGGAA
AAAAAATCGAAACAACAAACCACAGCAGCAGCGGCAGCAGCAGGACGCTC
TGGGCGGGAAAGCAAGAGGGCAGAAGAACAAGAAAAAGAATAAGAAATCT
TCTTCCAAGGAGGAGGACGCGCACACACCCGCCCCCTCTTCCTCTGAATG
CGCGGTAGCCGCCGCCAAGCAGGCTCTGGACCTAGAGCTGGCCAAGATAC
AGGCGCAAGCGCTGCTCTACGCGGAGGAGCAGCAGCACCGGCAACTCGAG
GACGCCCTCGTCACCCCTGCGCCGTTTGATTGA
back to top