mRNA_P-littoralis_Contig199.33.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig199.33.2
Unique NamemRNA_P-littoralis_Contig199.33.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig199.33.2 vs. uniprot
Match: D7FXL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL1_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 8.370e-57
Identity = 93/130 (71.54%), Postives = 114/130 (87.69%), Query Frame = 2 
Query:  668 GVGASAPPSTKRTARELLETRNTTSKMEIGEGVLLAADINGADLVIMKGRFEGNVNARCIDIEQGAEVKGAIECDAARIDGKFDGVLCSTHSLHLASHADVSGRVVYRRLKIAKGAQLHGKAEYRSPVVA 1057
            GV A   P TKRT R+LLETRNT +KMEIG+GVLL AD+ GA+LV+++G FEG V A+CIDIEQGAEV+G IEC+AAR++GKFDGV  S+HSLHLASHA+VSGR++YRRLK+AKGAQL+G +EYRSPV+A
Sbjct:   10 GVAAPTLP-TKRTVRQLLETRNTLNKMEIGQGVLLTADVTGAELVVIRGCFEGKVTAQCIDIEQGAEVRGTIECEAARVNGKFDGVFMSSHSLHLASHANVSGRIIYRRLKVAKGAQLYGLSEYRSPVLA 138
[Close]
BLAST of mRNA_P-littoralis_Contig199.33.2 vs. uniprot
Match: D7FXK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXK1_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.360e-10
Identity = 35/104 (33.65%), Postives = 61/104 (58.65%), Query Frame = 2 
Query:  734 TTSKMEIGEGVLLAADINGADLVIMKGRFEGNVNARCIDIEQGAEVKGAIECDAARIDGKFDGV-LCSTHSLHLASHADVSGRVVYRRLKIAKGAQLHGKAEYR 1042
            T   + +G+ V++ AD+   D VI++G  +GN+ A+ + I +G  ++G + C+ A + G F+GV +   H L L+  A V G+  Y RL +  GA L G+ +Y+
Sbjct:   76 TKRVLVVGKSVVMTADVENCDAVIVQGNLDGNIVAKYVVIMKGGCMRGTVVCEEADVAGSFEGVEMTIHHRLTLSGTARVGGKTTYHRLSVHDGAILTGELQYK 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig199.33.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXL1_ECTSI8.370e-5771.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXK1_ECTSI1.360e-1033.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig199contigP-littoralis_Contig199:128464..145123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog856793.MICA_1765
PFAMsBactofilin
Model size1214
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons7
Evalue4.62e-08
EggNOG OGsCOG1664@1|root,COG1664@2|Bacteria,1N26P@1224|Proteobacteria,2UD9Q@28211|Alphaproteobacteria,4BQVF@82117|unclassified Alphaproteobacteria
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-28_002120.1
DescriptionPolymer-forming cytoskeletal
Cds size846
COG categoryM
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig199.33.2prot_P-littoralis_Contig199.33.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig199 128606..144897 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789951.3012214-UTR-P-littoralis_Contig199:128463..1286051680789951.3012214-UTR-P-littoralis_Contig199:128463..128605Pylaiella littoralis U1_48UTRP-littoralis_Contig199 128464..128605 -
1680789951.389808-UTR-P-littoralis_Contig199:144897..1451231680789951.389808-UTR-P-littoralis_Contig199:144897..145123Pylaiella littoralis U1_48UTRP-littoralis_Contig199 144898..145123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789951.3144238-CDS-P-littoralis_Contig199:128605..1287281680789951.3144238-CDS-P-littoralis_Contig199:128605..128728Pylaiella littoralis U1_48CDSP-littoralis_Contig199 128606..128728 -
1680789951.3254313-CDS-P-littoralis_Contig199:129107..1291971680789951.3254313-CDS-P-littoralis_Contig199:129107..129197Pylaiella littoralis U1_48CDSP-littoralis_Contig199 129108..129197 -
1680789951.3341715-CDS-P-littoralis_Contig199:130577..1306491680789951.3341715-CDS-P-littoralis_Contig199:130577..130649Pylaiella littoralis U1_48CDSP-littoralis_Contig199 130578..130649 -
1680789951.3428416-CDS-P-littoralis_Contig199:132374..1325421680789951.3428416-CDS-P-littoralis_Contig199:132374..132542Pylaiella littoralis U1_48CDSP-littoralis_Contig199 132375..132542 -
1680789951.3542278-CDS-P-littoralis_Contig199:134174..1342161680789951.3542278-CDS-P-littoralis_Contig199:134174..134216Pylaiella littoralis U1_48CDSP-littoralis_Contig199 134175..134216 -
1680789951.3629653-CDS-P-littoralis_Contig199:138295..1384281680789951.3629653-CDS-P-littoralis_Contig199:138295..138428Pylaiella littoralis U1_48CDSP-littoralis_Contig199 138296..138428 -
1680789951.3747084-CDS-P-littoralis_Contig199:144679..1448971680789951.3747084-CDS-P-littoralis_Contig199:144679..144897Pylaiella littoralis U1_48CDSP-littoralis_Contig199 144680..144897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig199.33.2

>prot_P-littoralis_Contig199.33.2 ID=prot_P-littoralis_Contig199.33.2|Name=mRNA_P-littoralis_Contig199.33.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=282bp
MLLDCCPASWQGSNSSSRSGFSNNGARQTKPRQQKQQRQGETNVDNVAPT
AVTPMSARSSRALWPAVPSDTPSLRGPDKESAIRLELQTKMALTNEESSA
AQQSSAAGAADISGSTNAVEGKDRSNADINESAAVAAAGAALVPPPPGVG
ASAPPSTKRTARELLETRNTTSKMEIGEGVLLAADINGADLVIMKGRFEG
NVNARCIDIEQGAEVKGAIECDAARIDGKFDGVLCSTHSLHLASHADVSG
RVVYRRLKIAKGAQLHGKAEYRSPVVASVKK*
back to top

mRNA from alignment at P-littoralis_Contig199:128464..145123-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig199.33.2 ID=mRNA_P-littoralis_Contig199.33.2|Name=mRNA_P-littoralis_Contig199.33.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=16660bp|location=Sequence derived from alignment at P-littoralis_Contig199:128464..145123- (Pylaiella littoralis U1_48)
GAGGAGGAATAATTCACGGAAGGTGCCGCGGCGCGTTGCCGTTCATCCAG
CAGTATCCATCTCTAAAAAAGGTGAGGCAGACAGAGACAGCACCCACGGC
CAGCACAGCAGAGGCTGGTGAATAGATTAGACAGACAGACAGATACACAG
AATAGGACCCGAGACCACACAGAATACGTACTAAATGGATAGAAGTGCGG
GTGGAATCAAATCTCTCGGTAGATAGATGTTGCTCGATTGCTGCCCAGCG
TCTTGGCAAGGGAGCAACAGCAGCAGTAGAAGCGGGTTCAGCAACAACGG
CGCGCGACAAACGAAGCCGCGACAACAAAAGCAGCAACGACAGGGAGAGA
CCAACGTCGACAACGTGGCCCCCACCGCTGTCACTCCCATGAGTGCGCGA
TCGTCTAGGGCACTGTGGCCAGCGGTGCCATCGGACACCCCCAGGTGCGC
GCACTGAGAGACTTGAGTGCGGCTGTGGCTTTGTGAGACACGCATGCCGA
GCTATGGGAGCGAACAGGCCGGGCCTTCCACCAAGCTCGAAAGTCTCCAT
AATACTATAACAAGTATAGTATCCTTCGTATCACGCCCTTCCCGCTCTTG
CTGCTGCTGTGGTTGCTGCCGCAGTTGGTGCTTTTATGAGTCCCGACACA
CCAGCGGTCTGAACTACACTTTGACCTGGGCTGCTGCCTGCTGCCGCTGC
TGCCGCTACTGCTGCGGTGCTGTCGCCACAAGTGCAAAACAATGGAATAT
TATACTCCGTATTGAAATGTTATTCTCTCATTCTCCTTCGTTCTCTTATT
TCCTTCGTTGATACCTGGTATCATATAATGTACAGTACTTCGAAGTACTG
CACTTTTTGTTTTTTCTTTCGAACCTGTTTTTTTTTTCTGTGGTTTGTTT
GGTACTTTGGGCACTAATAACCGGTCGCCCCGTGGTTCAGGTGTATTCAC
CCAGGCTTCTGACATTCACGCGTAAGTTCGAATCCCACTGCAGTAACACG
ATCTGGGGCTTTTTCTCACGTTGCGCGTGAAAGTGGAAAGCGATCAATTC
GCGAGCACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACATTGCCGGGGCTACTTGGACGTTGCAGGCAGCACTCCAGACA
GCAACTAACTGCTGTAGTCTTGCAGCTACCTACTGGCTGCTTGTACAGCA
GGTTATTAGTTGTAAGTGGGGCGGGAGGAGACTGAACACGATGTTGTAGT
CAAATGACGCTTGAAGTAGTTTGATGCTGGTACTGCTGTGACTGCTGTAG
TTCAGTGATGCACACCGCGTAGGAAGGTGTATCTTCTACGGTCTTTTCTT
GGGTACAGGTATTCCCTTGTAGTTTCTTTCTGTTTTTTGGATGTTCCTAG
GGCTCAGCACTTTTTGTGACCACGGCTAATGTGAGAATCAACAACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACATGAGGGTC
ATTTTATTCAATGACTTTTTATGTCAAATATATAGAGTGTTTGCGCAAAA
GGATTTATTATCTCAAATATCCTTTCTTGAAAAAAAAAAATATTAAGCGT
GGTGAATAAGAATTCCTTTTAAATAAAATTTGAAAATGAGTTTGCGCAAA
AGGAATTCCCTTTTGACAGAACACCCCCACTCTCGTATGCTAGTGCAGAG
CAACAATCCAGACAGACACGCCCACACATACGGCTGATGATGTGCTGCTG
CTGTAGGATAGCCAAGACAACGAGTCTTTGGTTCAAGTAGTGGGGAAGGG
TGCCGGGTCAAGCGAAGTGAATGCAAACTCAGGAGTCACGGGCAGCAGGG
ATGGGGCAAGTTCGGCAGAGAGGCTGTAGTTGTGGAAGAAGGCACGATTG
GTGTGTGTCAACTATACTGCTGTACTTTAACTGAGTACAGAGCAGCTGAC
TGCTGTATGATACGTTCTATTTTCGAGTGCATAAAAAAGAGGTCGTTTGC
GTTTTCATCGTGCTAGGTATAAACCTCGAGCGATACTTCTCTCCACCGGT
TGAATGAACCCACTTCCAACCCAACCTCCTGCGAACGGAGAGCAGTATAC
AGAGGAGACAGCAAAGAAGTTTTCGCCTTGATACGTGGTGTAGAGAGCGA
GAGCGTGACTGCTGTGACCGCCGGTGTTCTAATGTCTGTGTCCCGAGACA
GCTGTATGTATGTTGCCTCTGCTGCGGACGCAGCCAGCCCACACTCGCTA
CTTTCAAAGAGTCGCTCCTCAGATGCTATGTTTTGCACGGCTGGCACGCT
TCCACCACATGAACCAGCGACGAAGGTGTTGGCACAGTGACTGCAGGGTT
GTAGGGAACCCTTTTTGAGCTCGCTGCCTTCAGAAATCACGGCGCAGTGA
TCGGTGTAGTCACCTGAAAGGTAGTGGTGTACCGTCATCTTCTCTAATAC
TCCGAGTAGAAGACTGTTGCGGAGAGGCCGGGGTGATTTGGCCAATCACG
TGATGTGCCGACATGGGCTCGCCTGGCAGATCAAATATTCTTTCCAAATA
TTGCAAATATCCTTTCTTGCCGGGAATTTCCGGAATTTGAGAAAATAAAT
CCTTTCTGTTGCAGTCACGGAGCCTCTCGGGGAAACCTCGGGGGAACCAA
GAAAGGATATTTGAGATAATAAATCCTTTTGCGCAAACTCTCTATTTCGA
CATGTCAAACATTTCACAAACACATCAGGGTCGTTTTAATCAATGACTTT
TTATGTCAAATATTTCGACACGTCAAACATTTCTACACATGTATGAAGGC
ATTTGTCGACTTTTTTTCCAAAAAGTGTGATCTGATCTGCAGCCCAAAAG
TGTGAGCGACTTGGCTCACACTTTTTGACATTTTCTTTGATATTTTCTTT
GACATCCCCAAGCGAGGCCGAGACGCCGCCGGCAGAGGGTCCAGCAGTGG
CGGCTCACCCCAAAAGACAGCCTAAGGTGTGGGTGTGGCACGACCGACAG
CAGAAAGCTATTTTTCTCCCAGCTTCGTCCCTGAATTCTCGACAGCACCA
GCAGCCAGCTGTGGTGACGGGGGGTAGATTTTTTGTTCTTTTCTTCAGGG
GAGACCGGTCGCCCCGGTGGTTCAGTTGGTGTTCCACGCAATCTTCTGAC
ATTCACGCGTGAGTTCGAATCCCAGTGCAGTAACACGATCTGGAGCTTTT
TCTCACATTGCGCGTGAAAGTGGAAAGCGATCAATTCGTGAGTAAACAAA
ATTCGGTCGTGCCGTCGACGAGGGAAAGGGATTGCTGTCCCCTTTCTCGC
GATAGAAGCTCAACCAAAAAGGCAAGCACCGCAGAGGGAAGTGGAGAAAA
AAAAGAAGAAAAAAAAAAACTTCTATGTTGAGTTCCCCCTGTGTGACCCC
GGTTGGAGCGTCTACCTACCCGAAAGGTGTAGAGTGGCGTCCAATGAAAG
GGATGACAACACACACACAACAACATGCCTGAAAAGTCTGCTTGATACGT
GATCACAAAACGTTTTTTCCCGTGAGACCTGACACCCCACAGCCCGAAAC
CTTGGCCAAGCCTTACAGAGGACAGGCATGTATCGCCCGCCCTGCAGTTT
TCAGGGAGTCTCGTCTTTCGTTCGGCGAGCATGGAGTGGAAAAGATAACT
GTTGTGCTGCTCTGGAAAATGGGTCGAAACGTCAACAAATATGCTCTCCA
CAGCAGTGGAACCGGGGTGCAGGGTACTTGGTACCTCTTTCCTCGCTGCG
TACGGCACCCAACGACCTCAAATCTTGGCCATTCCCGACGGCCAAGGAGC
CCACCTCTCTAGGGGTGAACTCGGCACCGAGTCTCATCCCTTTTCGGGCG
AGATATCGTCAGATGTGTGGAAGTGATGTCTCGGTGAGCAAATGAAGCAA
ATGACCAACGCGGACAGGCGGAGAAACAACACCAGAAAATGTGTCAAAAA
TATTGACGTCTGCGCCGCCTGTTTAAAATGGACGAAAAGCATGTCAAATA
AAGTGACAAAATTTGTATCACTTATTTGGAAATGAAAGCTCATGATGAAA
ACGCCCCTAAGGCCCTCTGTTCACGAAAGTCGGAAAATCATTATTGAAAT
CATAATTATACACTGACTATAATTTTCCGAAAAATCCTTCGAGCCATATT
AGAGCCCGTATTAACGGAAGGCCAAAAAAACGAAATAGCGAAAACGAAAA
CGAAATTGGGCTCTGATTGGTCGGGAAAAAAAAACGAAAGAGGCGTGTTT
TCGTTTCAACGTCCTCCGGGGAGGCGTTCCTTCGTTTTCGATTTCGCAAA
AATATAGTGTTTCGGACCTTTTTTTTTGCGAAAACGAAAACGAAATGCAT
GGAGTTTGGTAACCTGGGAGGCATGCCCATGAGCCTCCCAGGCGGCGAAC
TCCTTCACACAGACTGCGACTGCGGTACACGGCGGTGCAACAGGCACCAA
CCCGAACAGAGCGAGGCCCAACCACACACTACAGCAGCGCAGCAGACAGC
GCCGAGCCGTCATACCCGCCAGTCAGTGCAACAGACAGCACACGGCCGTC
TACGATACCCACACGCTGACACGATGCATTCCACCGCGTTATTTGAAATT
GGGCCCCGCGCGTTCTGGGTTTACATCATTTTTGGCGTTATCTCCTTTAT
TCCGCTGCTCCAGCTCCTCGCAGCAGCAACGCGTTAATACCGAAATGGAG
TTTTTATTTATTTTTCCAGAAGAACGAAGTTATTTCGTTTTTGTTTCCGC
TATTTCGTTTTTTTTGGCCTTCCGTTAATCCCCGCTCTTAACGAAAGAGC
TGCAAAGGCTCTTTGAAGGCCTGTAAACGCCAGCAGAATACAAACCTCTG
ATGATGACGACACGACGGGTAAAACAGAACAATAAAATGTACTGCTGTAC
AAAGTACTCCGTACAGCAGTACAGCAGTACTTGGACGCATCATGGGCGTC
CTCTCGCATGAAAGGCAAGGTCGTGGGCTCTGTGCACCAAGCCTTGATGC
TGACAGACACCCCGTTTGTAGACGTGTGCGGTGTGTGTGTATGTGTGTTG
GCTCATGCACTCAAGACTGATGCTGTGTCATGTGTCTGTCTGCCATGGGC
TGTGAGAGGCGGCTTCGTGCTCGTGACCTGTGACCTACCTGTCTGCATCG
TGCGTACTGATGGTGTGTTGTGCAAAATGAAATGTAAGTCGTCATCATCA
ATCATGCAAACTGGTGTGTTCGCTTGTTGCGCTGTCATGTGTGGTGCTCA
CGTGGGCTTGCCTGGTGCAACGGCAAACCTCTATGCTTGCTCTGCTGTTG
GTTGCCTCGGTAGTAGTTGGTCTGGCCAGCCTCGTGCGCGAGGCACATCG
TTCAGAAAAAGCCTTCGATCGGGTTAAGACCCCAATATGTAATGATTTAT
GATTTTCTCCCAATTAAGTCTTTTTGGACTTCTTTGGTCTGCCGGCGATT
TCCAGATAATCATTGGCGTCGTCGGAAGGTAATAAAATATTTTGGCCAAT
CAGAGACCTTCTATGATAATGATTTATTCCAAGAATGATTTTCCGACTAT
TGGTAGTACAGGGCCTAAGATAACACACCCCCCACAGAATAACACACCCG
TTGCTATTTTTTCTTTACATTTTCACCAAGGGGCCCATCTATCACCCGGG
TTACATATTACATAAGATAACAAACCCCCCCTGAGGATACCCCCGCATGC
AGTCACGGAGCCCCTACTGCTACCGGCATCACCTCTGTGCAGTCCCCTCT
GTGATAGGGGCAGCAGAAAATAACGCTCTTGACGAACGAATCAATTTTCA
TTGCTCTCTTGGCTTCTTGGCATGTTGTATGTTTTTTTCGGGTGATATTC
ATGGATGACACGTTTTTTTATTACGAAGTACGAGTAAAGTGCATCGCAAC
AATGTGCCGTTGTCGATTGAAGCTGTGGCGTCTATCTCAAGGGGCGTTAG
GCTCAAGAGATCTATCGTCTCTCCTGTTAGCACCCCCCCCCCACCAAACT
TTTGCACTACAGTACTGTACTGGTACCGGTGGAAAGTTGTGACATTTTTG
TCACACCTCCCTCATAATGCCCTTGCAAGTGTAGCAGCATTATTTGCCGG
CCGTGTGATCACACCCCGCAGTGTTATCACACACCGTGGTTGTCACACCC
CATTTATGGTCAGACGCCTTGCAAACTCGCGCGCTCCCCCTTGCGCCTGG
TCCAAATAACGTATACCTGCTCTGCGGAAATCCAACTGTGCCCCCCCCCC
AGTCTCGCCGTCTCGCCACTGTAGTTGTTCACATACGAAGTGCTTCGAAG
CATGTACAGCAGTAGTAGTAGAGATGCGAGGGTCCATAATCCTAAGGATG
CCGGCATGCAAGGAATGATTTCGAAATCCATTCCTTCCCTTCCTTTCGAC
AACAACCCATGCCAAATCGTGTTTTTGTTTTTTCCTCCGTTTCAGCTTAA
GAGGTCCAGACAAGGAGAGCGCGATCCGTTTGGAGCTGCAGACCAAAATG
GCGTTGACGAATGAAGAGTCTTCTGCGGCACAACAATCAAGCGCAGCGGG
GGCGGCGGATATTTCAGGGTCAACAAACGTGAGAAAACAGGTCATTTTGT
TTGCATGGGCAGACGCCAGAAAGCGGTATACCGCCTGGTTTCCGCCCCAC
CACGCGGTACACCAAAATACACCTTGGTAATTGAGCCCCGTTCGCGTCGC
TGATTGGCCAATTAAGTCCTGTACCGCTTGCTGGCATCAGACTGTGGCGG
TATACCGTTATTTGGTATTTGTTGTACAGTACCGACTTCCGGCGTGGGTC
TGGCGGGGCCACAGCACCCTCGGCGGAATTTCTCCAAGACCGTTCGCGCC
GAAAAGAATTTGGAAGAAATTTCGAGAGGTACGAGAAATTTCGTTCCACA
AACAACGCAGCCACATCATGTCTTCCGTCATGTCACGGACATAGCAATTT
AGATCTTCTCGGCACGCTGTCTTCACAGCAGACAGACGCATCTCTCCGTC
CCTTCGGCCACTGGTATACAAGAAATGCAGCTGCACGTTGCACGCATTGC
ACGGATATCATCGTGTGCAGATGGCACGGTTCTCTCGATCTCTCCATCCA
TGCTGCTTGAAAGGCTGACAGTCCTGCCGGCAGCAAAGCTGTGACCGTAC
GGTGACCGTACACACCCAACACATGACACCCCCCGCGCCCCACGCCGCGA
TGGCGACAAACAACCATCGTAAAACGTTGTAGGCTTCATCACAACGAAAG
ATAATGTATGTGTACGCGAGCTCCGAGCGATGTTTCGTTGCCACGGGGCG
CTCCATTGTGGCCAGCAAAGGCAGCAGTCGGCAGCGTATGTACCGTTGTG
ATCAATCGAAGAAGGGTTGCACGGCCCACATTCGGTGGACCAAGCAAGCT
CAGGGCGAGTGGAAGGTGTCTTTTCGCAGGACTGTCAGCCTTTCATGCAG
GTTAGAGAGATCGAGAGAACCGTGCCATCTGTACACAATGATATCCGTGC
AATGCGTGCAACGTGCAGCTGCATCTCTTGTATACCAGTGGCCGAGAGGA
CGGAGAGATGTATCTGCCTGCTATGGAGACAGCGTGCCGAGAAGATCTGA
ACTAATATGTCCGTGAAATGACGTGGCTGCGTTGGTTGTGGAACGAAATT
TCTCGTCCTTCTCGAAATTTCCTCCAAATTCTTTTCGGCAGGAACGGTCT
CGGAAATATTCCGCCGAGGGTGCTGTGGCCCCGCCAGACCCGCGCCAGAA
GTCGGTACTGTACAATAAATGCCAAATAAGGGTTTGTCTTATCGAGACCA
AATTCTTGATTGTGATAATTGATTGTGATTCTGATTATGACGGTCCGCAC
GCCCAAAATCAATGGAATTCACCTGGTCATCTTATCGACGACGCAACACA
GAGGCAAGCTTGATTTTGATTCTGGAAACCGCACTCCTCGGACAGACCCA
GACCAACACGGAGTAATGTCGGGGTGACTTTTCCTCCTGCAAACAACAGT
CTTTTGTCAGACAACAACAGGAGGGTATCGCTGGTTGGTGCTGCTGCAAT
TCTCGCCCGCAGCAAACCTGCTGTGTCTGTAACTTCATGGAAGGGCTCGC
TGACGGGTTTGGGGCGGCATCACGAGCCACCAGCTGTACGGCAGCAGCAG
TGAGGCTGCTGGGTTATATTGCATGTATCACGAACGATACACAAGAAGTG
TAAATATTATTCCTCCTCTGAAGTAGTGCTGCTGCTGTACTGCGTTTTCT
TCTCGTTGCTGCTGCTGCTGCTGCTGCTGCTGCGGCGTTGCTTGAATGGT
GAACTATGTGATGATAAAAAAAAAATAACAGCTAAACCAACCACAGGAAT
GAACAAAAAACAAAACAGAGCGAACAGTCATTATCAAAATCAATAATCAA
TAATCAATATCAAGATTTGTTCTCGTTAAGATAAGCCCTAACGGTACGAA
TCGACATGACTGAGAAGCCTCGGAACGGTATACCCCAAAGTCTGATGCCA
GTAGGCGGTACAGGACATAGTTGGCCAATCAGCGACGCGAACGGGGCTCA
AATGCCAAGGTGTATTTTGTTTGGTGTACCGCTTGGTGGCGCGGAGACCA
GGCGGTATACCGCTTTCTGGCGTCTGCCCTTTTTTCATCTACCTACGATG
GGATTGTTGTTGGTTTCTGGTTGTGGTGGGAGCTCCTTTTTCACTTTCCC
GTCTCCAGAAAGGGGGTGCGCCCTTTTATTTTGTTTTAATGATTTTTGTG
GCGGTTTCGATTGTGGCTTTGTTTTGTACGGTACTGTTTTTCTTTTTTTG
CATTCGTGTAGTTTCGTAGTTTCAGTTTGTTTGTATCTGCAAGTATCTCT
TTTCATGTCCATAATACTTTTATTTGTTATACCGCTGACGGTTGAAAAAA
CTTCAACTCCTTAGGCATCAAGAAGACTTTTCTAATCTCGAATAGTTTGA
GGCCATCCACAAATGATGGTTAGGAAAACCGGCTTTTTCCTGATCTGAAC
TTTTTCTGACATTTTTTCTAACCGACCTAATTGACCAGAGACTTGATATG
TTTTCCGAACTGGTTCTTGAGTCGACCAGAAAACGTTGATTAGAATATTC
TAAACAGCCTAATCTCGAATGGTTTGAGGCCATCTACAATGACGGTTAGG
AAAACCGCCTTTTTCCTGATTTGAACTTTCTCTAACAATTCTTTTATGAT
CGACCCAATCGACCAGAGAGGTAATATTTTTTTCGTACCGGTTCCTGAGT
CGACCAGAAAACGTCGATTAGAACAGTCTGAACAGCCCCACGTTAGTTAG
TTAGCGTTTCTTTCCGCGACTAGATGAACTCCAAAAAAAATTCGCGAGCC
TACGGATGCCTCGCGGCCTCAAAGGATCACCACAGGAGAGAGAAGCATGC
ACACACCTCGTTCAGTAGGTTTTGGGCGATGGCTTTGGTATTGCTGGGGC
TTCATTCGTTATTCAGAGATGGATGGACGAAGAACCAACTTCGTGGAATC
GCGAGAGAGAGAGAGAGAGAGAGAGGCGGCAGCTGATTTGAACTCTTGAA
CACAGCAGCGGTAGATTTTTGGTGCCGCCTTCAGTTTTATTGTCTTAGGT
CCAGCGCTCTCGAACGAATGAAGCCACAAATACCAAAGTACATCGCCCGC
GAGCTGTGCGTGCGTGTGGTCCTCCTCCCGTACATACGGGGTGGTTGTCG
GAGGCTGCTGCGAGAGACATCGATGGGCTGTGATACCGCAGAAAAAAAAA
GTGTCCGGTCATCGATCGCGTGCAAAAGTAGAAGAGAAAATAAAAGACTA
AAAACAGCCTCAGAAAAGGTGGAGATTGATCTTTCTCTTCACTCTCTCTC
TTCACGGACGCGTGACGCGTCACCAGTGCCTTCAAACTTGTTTAGCTGCA
TATCCCAGCCTGTTGATGCCTCGCGGCCTCGGATGACCACCGCACGGGAG
AAGAACGAACCAGGTACGCACCCCGCCGCGAGGCATGGTGGCTCAGGCTC
TGGTTTTGCTCGCGGCTTCCTTCGTACGAGAGTGACGAGCGGAAAAGGCT
CATCTATCGTACAGTATGATGTCCGGTTGCAGGGCGATTTCGAATGTCAA
AAAATTAAACACGAAGAGAAATGTTCCTTTCTCGGAGGACAAGACAAACG
AAGTACGAAGGATATGCTTTGGATCTCCTCTCTCTTCTGTCGTGTTGTTC
GGTATGAAATCTGTAAATCTGTAATAAAGCGGTTCTACTTACTCCGTATA
ATTTTTCATGTTGGAATCGCCCCTACTGCAGAGAAACTTTTCTGACGAGG
ATTTTTCGAAACGCAGGAAGCTCATTTGTTTTTTTCCGGGGAATTGTGGG
TTTCGTTTCGTTTATCCATAATATGGCTAGTCAGCAGCCACGGATGGCCA
AATTACATCAAAGGAAACCCAACCGTTACCACTCGTGATCATGCTGATGT
TGCTCTAAAGCAGTGTAAATGACTCCGTTCGTGAGAAGGCGAGGTGTGGT
TTTCCAGGCGTTCAGGCGCCTCCTGGGGGCTTGATATTCACGCCCAATGT
TTTGTTTTTGATGGCCTGCTCATCGGTTTGCTGCTTGCTGCTTGCTGCTT
GCTGCTTGCTGCTCGCTGCTGCGGTCGCTGGATCGCTGAAACTCGCTGGT
GGAGCAGGCTGTCGAGGGGAAGGACAGAAGTAACGCCGACATCAACGAGG
TACGCATAATGTGCAGCGAGCCCGTTGCGTGACACTTTTTTTTTTTTTTG
TGACCCTTTGTGATGAAACACAGTAGTAGCCAGTAAAGGAAAAATGAGAC
GGAAAGGAATGAAGAGAGGAAACGCCGATCCACCTGATGCAGGCAGATAA
GACGCAACGCAGCGGGATACCATGTGACCTGGTTCCTTACAGATATGGTT
GCGTTTTCCGGCAAGGGTTTTTCCGTCAACAGAAAGAATTCGGTGACATT
TGCGGACAGAGGGATTTAGTTTCACTACTCGACGAATTGGTTCTATTTGC
TGACAGGGTTTGGGTCCATTTACCCACAGGGTTCGGGTCCATCTATCCAC
AGGATCTGGGCCCATTTGCTGGCAGGGTTTGGTTCCATTTACTGCTGGGC
TTGGCTGCATTAACACAAGAAAGGGTGTCGGTTCTGTCTGCTTGACTGGT
TTGGTGTCAGTTACACAAGGGGTTTCCATACGCTCAGTCCGAACGGAAAA
AAAATATTTCCCAGGCCCCTTCTTTCTCGCCAACAATTGCCCGGAGTCAT
CATCGGTGAACGGACGGTCGAGGCTGATCCGCACAGCAGTACGTACGTAC
GTACGTAGCTTTCTTTTTTGTGGTCGCTCTTTTGAATCATGGGGGATTCA
CGGGGCCCCTGTGCCCTGTGTGCCTCTTCTGAGCTGCTCATTTTCTCATG
CCATGTACGTTGTTGCGTTCAGCCCGTTGTTGTGTTGCCTGGGACGCGTA
AAACCTGACGCGCTCAATAACAAAACGGCCCTTGGGGGGGGGGGGGGGGG
TACTACTACTGCATACTGCATGCCGGTACATAGGTGGATGCGGAAGGTCG
TTTTATTGAAATCCCTCTTCTGGGCGCGGGGGGGGGGGGAGGTAGTTGGC
CGGCAGCGCGCACGTCTCGATTCCGTGCAGGCAGGCGCGCCCTTGACCAC
TAGGTTCCCCAAAGCAAGGCTGATCGACAGGCAGAGGTAGCAGTGCTGTT
GTTGTTGTGCGTTCAAACGTGCAGGAGAGAGACGCCCCACGTTTTCTGAT
TGAGCCGTGCCGTGTTGAGGGGGGGGGGGGATGATGTCCTCTGGCCGCCT
TCGCATCACACACACGTATCATACAACATGGTGGTGACACTCCAAGTACT
CTCAAACTGTTGTCTTCGAAAGACCCGCGTTTTTTTCGGAGGGGTGGTGG
GGGGCAGGATGTATCATGACACATGTTTTTTGTTCGCGACAACCACGTGA
GACGTTTGATGGTCAGATCGGAAGTGTCTTCGAATCGGAGGGCAAGCACA
AAGAGCGATGGATGCTGGTTGGTTTGCCGTGTAAAAGGTAGCCATCGTGT
TACATCCATCCTTGCACACAACGTTTTTCGGTCGCGCCGAAAATTGCTAC
GGCACTACAATTACCGGTCACCACCAGGTGTTTTTTTTTTTTTTTCCTGG
CTCGTGTTGCCTCGAACTCCTTGTTTCGCATCATGCTTCACGGGAATCTT
GCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCCCCCCGCCCCCGCC
CCCCCTTCCCTCCTCGCCCCGCCCGTTCCCGATGCCAACCGCAAAACGGT
CTGGATTGACAACGAAAACGACACACAACAGAGTGCTGCCGTGGCGGCGG
CAGGAGCAGCGTTGGTGCCGCCTCCGCCGGGAGTGGGAGCGTCGGCACCG
CCGTCCACCAAGCGCACCGCGCGAGAGCTGCTGGAGACAAGGAATACGAC
GAGCAAGATGGAGATCGGGGAGGGTGTCCTTCTTGCGGCTGACATCAATG
TGCGCTATTTGTATTACCGGTATATACATACAAGTATATGGTTTTTTTTG
GGGGGGGTCGTGTTTTTGTTTGTTTCTTGTTTTTTTTTTTGGCGTGAGTT
TTGCGCACCCCCCACCCCCCGTAGTTCGACCGACCTCTCCTCCCCTCCTC
TTTTGAAACGGAGATGTCGCGTGCGGACGGCCTGGCCGGTGACCCTGGTT
GTTCAAATCATCAAGAGCAGGAGGTTGGTGCAACACCTTCGTTTTTGTCT
TGCGGCTTGCGCTATGTACGTCAATGCGACATGCGTTTTGTACATGTCAT
GCGTGTGTTTGGGAGTGTATTTTTGGATGTGCGTGCCGTGCGTCCCCTGT
AAGTCAAACACATTCGAATCTCGTCGGACTGTATGGAAACCCTTCGTATG
GAATTCAAGACATGCCGGCATCCCGCCGAGTCCCGTTCCTGTCGGGCAAA
GTATTTCAGTAATTTTGAGCAACACCGTAAAACCCTTTTTTTTTCCCCCT
GTGTATAATTCCCCCCCCCCCCCCCCCCCATCACCTTTTCAGCCTTGAAC
CATGAAACCTTTGATTTGACCCCGGGGGGAACGTTGATAACAAAAAAATA
CATATCCCCCCCCGATACCCAATTTGCCCCCGGGATAATTTTTCTCCGAT
TCGTTCCCCCCGGGTTTTCTTTTTTTAGTTGTCGTATTTGCGATTTTGTC
ACCACTGCGAATGGAAAGCGCCGGCTCTTTGAGGCCGGCAAGCTGTTTTA
TTGCTAATATTCTTAGATAGTCGTCACTAAGGCCGAGCCGAACGCACACT
CGGGCCTGGATTGCTTGGATAGCAATGACTGCAGCAGCAGTGGTGCGTGA
TCAATGAAGACCACGTGATCAGTCAAGATCACTTGTTGTTTGTTCAGAGA
ACAGAGGCTTTTTCATTATTTTATTATTTTCCGCCGTTGACGAAGAGGGT
GCCACATGTGGTTCACTCAGCACACAGCATACCACACAGAAAATAGACCC
ATCACACATTGTACTAAAAAAGGAAAAAGAGAACCGCTACCCCCATGGTG
ACGCTCAGGAACCCCCGTTCAACTACCGTAGAGGCCGGTGTCGTAGAGAG
TTGGAGATACGTAGAGAGTTGGAGATACCGGTACTACTGACTGCTGAATG
TGTTGGCCGTGCGTGCATTTTTTTTTTTCTGGGCTATCCCCCCGGGGTAA
AGTTCGGAAAACAAAATATTGGCCTTTCCCCCCCGGGGAGATTTTCCCCC
GGGGTGATGTCATAGAAAACAAAAATCCCCCCCGGGAGACTCAATTTGGC
CCCGGGGGGTACGTTTTCGGAAAAAAAAACATTTACCCCGCCGGGGGTAA
AGCAAAGGTACATACGGTACTTAAATCATGCTGAATCTGTCAACGTGGGC
AGTTTTGTTTTGTTTTCTGCCAACGTTGACAGATTTTTTTTTAAGTCCTG
CCAGCGGTATGCCATCAATTAGCACGCCATCGCCCTTATCTCGTGACACA
CGAGCACCCGGTGGCCGAAGTAGATCGTGGGGCGGTTTGCTGCAGCCTTG
GTGCTGTCCTTGTAGTTTCTGCCCCGGGGTTGGCATCCGTTTCCCCTCTA
CCATATTGCTGTGTTGATCGTGTCGCTGTGCTTTATTTTTCCTCCTCTCT
CTCGTTGTTGTCTCCCTGTCTCCCTCTTTTTTTTTCTTTTTTTTATTGCT
CGTGGACGTCTGCGCCTCTTACAGGGAGCTGATTTGGTGATCATGAAGGG
CCGTTTCGAGGGGAACGTGAATGCACGATGCATCGACATCGAGCAGGTGT
GTGTCTGCGTCTGTGTGTCTGTGTCTGTGTGTTTGTATGTGTTGTTCACC
GAGACCGCTGGCGATTTTTCAATATGGTCGTCTTTGTTTGTTGCTGTTGG
TCTTTCGCTGTTGTTGCCGATGATCACATGAGCTCGTCTCCAGAACCTTT
GATAGCCCGCCGTCGCAGACCAGACACGTTTTTGCCGTGCCAGGTGGAAG
CAAAAAACAATATCGTATGAGGTGATAAAAAAAAAGAAAAGGAGGACAAA
AGCGTCCGTCTGCAAACGTAGCGTGGGTGAGCTTTCGTTCGTACCACGGG
TGGCTGGCGTACTCTCCTCAATGCAAATCCCATTTCATCGCGCCGGCTCC
TCCAGGGGCATTTCGTTCCGTTTGTCCGAAACCTTTTGTCGCTTCTGAGC
GATTCTTCTCAAAAGCGGGGGTGGTCGCACTCATTTTTTATCGCTGGCAG
TGGCGTTGATAACCCTAACCCTAACCCTAACCCTTACCCTAACCCTGATT
AATAGTTCTACATTGTATCCTAGATACGTTTCCCCCATACAGTCATGCAC
TCGTAATCCACTGTATTTGGGGCTGTATCCGATGTACTTCAGGCTGCATA
TTGTATCCCATACACTTCAGGATAAGTTCAACTAAAAAGTGGCAGCCAGG
TCCACCTGAAGGTGGTAGTATGTCGGACTGAAGTGGCAGCTTTTGGCAAT
TTTGATTTTGTTGTCGCTGTGTCCGTCTCTGGACCCGGTGGGGCCAACTC
CGGTGCACGCAGGCTACAGGGTGAAAAAACGATAAAACGGTCGCCGGCCC
TGATACACGAAGTGTCATGCGGCACATGTGATGCTCTCAGGGTCCAGCAG
GAAAACAAACCGCAAAACAAACCGGAAAAATGGTCTTTACCAGGAGTCAC
TCACTCATGGAGGGACGAGGGATGAGATATCATGCGTCTTCGTGTGCTGC
TGTAGAGGCTCTTTCTGCGTACGCCCCGCGAACTCGAACGAACAACAGCG
ACGGCAGCGGTTCACGGTATACAGCACCCAACGGACATGAACCGCCCTGA
AAGAGCCCTCCACAGGTGTGGTGTGGCCGGAGTTTGTCTTCTTCGGCGGC
AACGCCGCCGCAAAATGTAGCAGCAGCAGCAACAACAACGACAACGACAA
CGACGACCAACTACACTCCTCCGGAACAACAATGACAGAGCGGTCGTCAA
CACCAACAACAAGCGCGCTCTTTCAAAGACACCGGCAAAAAATACAGCAC
CCCCCCCCCCACAACAACAACAACAACAACAACAACAACAACAACAACAA
TACCCACTGACAACAAGCGTGAACCAGCGCCCAACTACCTAACTCCCCCC
CCCTCCGCGACGAAACGAAACGGCAGGGAGCCGAGGTTAAGGGTGCGATC
GAGTGCGACGCGGCGCGGATCGACGGGAAATTCGATGGAGTCTTGTGTTC
CACCCACTCCCTCCACGTGAGAACTGTACTCAAGCACCTGTCTATCTTGT
GTATCTCTCTTGTGTATTTCTCTCTCTTCTCTCCCCCCCTCCCTCTCTCC
TCTCTCTCCTCTCCTCCCATCTCTCTCGATAATTGACCTCCCTCCCCCGC
TTCTTGTTGATGGATGGGTCGGTGAGGCTCGTTCACACACACACAGTAGC
CCCCGCCTTCGTTGAAGCGGCACCGGTACCCCCTCCTCCTCCTTTCGAGA
TATGGCCATCCTACAGTCAGTAGTGCTTGTTGTTCCTCCTCTCTTAATGA
CGACTGCACAAAGAAATTCGCTGCCCCTCTTGCTCTCGCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCTCTTCGCGTGGTGGAACTCCCCAGCTCGC
TTCCCACGCCGACGTGTCGGGCCGCGTCGTCTACCGCCGCTTGAAGATCG
CAAAGGGCGCTCAGCTCCACGGCAAGGCGGAGTACAGGTCGCCCGTGGTT
GCCAGTGTCAAGAAATAATTGATTTTTTTTTTTTGTCGTGTGTCGGCGTG
GTGTTGCCCGCCCCCCGCGCGTTTGATGCCGTGTTTCATTAAGGTTAAGG
TTTTTTTGTCGTCTGACCATTGATTTGCCGCGCTTGCATGTAGTCCTTTC
GAGACGCAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig199:128464..145123-

>mRNA_P-littoralis_Contig199.33.2 ID=mRNA_P-littoralis_Contig199.33.2|Name=mRNA_P-littoralis_Contig199.33.2|organism=Pylaiella littoralis U1_48|type=CDS|length=846bp|location=Sequence derived from alignment at P-littoralis_Contig199:128464..145123- (Pylaiella littoralis U1_48)
ATGTTGCTCGATTGCTGCCCAGCGTCTTGGCAAGGGAGCAACAGCAGCAG
TAGAAGCGGGTTCAGCAACAACGGCGCGCGACAAACGAAGCCGCGACAAC
AAAAGCAGCAACGACAGGGAGAGACCAACGTCGACAACGTGGCCCCCACC
GCTGTCACTCCCATGAGTGCGCGATCGTCTAGGGCACTGTGGCCAGCGGT
GCCATCGGACACCCCCAGCTTAAGAGGTCCAGACAAGGAGAGCGCGATCC
GTTTGGAGCTGCAGACCAAAATGGCGTTGACGAATGAAGAGTCTTCTGCG
GCACAACAATCAAGCGCAGCGGGGGCGGCGGATATTTCAGGGTCAACAAA
CGCTGTCGAGGGGAAGGACAGAAGTAACGCCGACATCAACGAGAGTGCTG
CCGTGGCGGCGGCAGGAGCAGCGTTGGTGCCGCCTCCGCCGGGAGTGGGA
GCGTCGGCACCGCCGTCCACCAAGCGCACCGCGCGAGAGCTGCTGGAGAC
AAGGAATACGACGAGCAAGATGGAGATCGGGGAGGGTGTCCTTCTTGCGG
CTGACATCAATGGAGCTGATTTGGTGATCATGAAGGGCCGTTTCGAGGGG
AACGTGAATGCACGATGCATCGACATCGAGCAGGGAGCCGAGGTTAAGGG
TGCGATCGAGTGCGACGCGGCGCGGATCGACGGGAAATTCGATGGAGTCT
TGTGTTCCACCCACTCCCTCCACCTCGCTTCCCACGCCGACGTGTCGGGC
CGCGTCGTCTACCGCCGCTTGAAGATCGCAAAGGGCGCTCAGCTCCACGG
CAAGGCGGAGTACAGGTCGCCCGTGGTTGCCAGTGTCAAGAAATAA
back to top