mRNA_P-littoralis_Contig198.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig198.40.1
Unique NamemRNA_P-littoralis_Contig198.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig198.40.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 9.760e-19
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    4 DGRSKRWLHVATTAYWADLRDWSSAVGTDWTHERDLILEPL--------RADCVRGMYHNYKLQRKRDKGGSSNRMAVGQSSP 228
            DG S  W HV  + YWA+L +WS+ VG  WTHERDL+ +PL        RADCV  +Y  YK +R+R++ G+ + M +GQ SP
Sbjct:   37 DGCSTNWQHVVDSEYWAELGEWSATVGEGWTHERDLVGDPLKAGECICRRADCVVNLYQRYKGRRQREEKGALHTMVIGQRSP 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig198.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGM7_9PHAE9.760e-1946.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig198contigP-littoralis_Contig198:148346..148573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size228
Hectar predicted targeting categoryother localisation
Exons1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789948.482589-CDS-P-littoralis_Contig198:148345..1485731680789948.482589-CDS-P-littoralis_Contig198:148345..148573Pylaiella littoralis U1_48CDSP-littoralis_Contig198 148346..148573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig198.40.1prot_P-littoralis_Contig198.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig198 148346..148573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig198.40.1

>prot_P-littoralis_Contig198.40.1 ID=prot_P-littoralis_Contig198.40.1|Name=mRNA_P-littoralis_Contig198.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
HDGRSKRWLHVATTAYWADLRDWSSAVGTDWTHERDLILEPLRADCVRGM
YHNYKLQRKRDKGGSSNRMAVGQSSP
back to top

mRNA from alignment at P-littoralis_Contig198:148346..148573-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig198.40.1 ID=mRNA_P-littoralis_Contig198.40.1|Name=mRNA_P-littoralis_Contig198.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig198:148346..148573- (Pylaiella littoralis U1_48)
CATGATGGGAGGTCAAAACGGTGGCTTCATGTGGCAACCACTGCATATTG
GGCCGATCTGAGGGATTGGTCTTCAGCGGTCGGGACTGATTGGACCCACG
AGCGGGACCTTATCCTGGAACCACTGAGGGCCGACTGTGTGCGTGGCATG
TACCACAACTACAAGCTTCAACGCAAGAGGGACAAGGGAGGATCTTCCAA
TCGCATGGCGGTTGGCCAGTCATCCCCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig198:148346..148573-

>mRNA_P-littoralis_Contig198.40.1 ID=mRNA_P-littoralis_Contig198.40.1|Name=mRNA_P-littoralis_Contig198.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig198:148346..148573- (Pylaiella littoralis U1_48)
CATGATGGGAGGTCAAAACGGTGGCTTCATGTGGCAACCACTGCATATTG
GGCCGATCTGAGGGATTGGTCTTCAGCGGTCGGGACTGATTGGACCCACG
AGCGGGACCTTATCCTGGAACCACTGAGGGCCGACTGTGTGCGTGGCATG
TACCACAACTACAAGCTTCAACGCAAGAGGGACAAGGGAGGATCTTCCAA
TCGCATGGCGGTTGGCCAGTCATCCCCG
back to top