mRNA_P-littoralis_Contig198.39.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig198.39.2
Unique NamemRNA_P-littoralis_Contig198.39.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.190e-50
Identity = 82/145 (56.55%), Postives = 107/145 (73.79%), Query Frame = 1
Query:    1 VQALLEHLEVNGLVLDCCGSTRDAPSMVLTGYGLHVVTNDVDHKLIADSHMDVTTRDFYDLFSQETRRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKLRLNFLEPTKSRGPWLAENYPELVVVLPRASYRGRQSFAVEVWFVW 435
            V ALL ++++ G VLD CGS  DA  +VL  + L+V TND + +L AD+H+D T+ +F  +FS E +RPDWIV+SPPY NAF+I  +AL +VR GVAFKLRL+FLEPTK+RG WL +N P  VVVLPRA+Y GR   + E WF+W
Sbjct:   15 VDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIW 159          
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO)

HSP 1 Score: 90.1 bits (222), Expect = 6.920e-20
Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:    1 VQALLEHLEVNGLVLDCCGSTRDAPSMVLTGYGLHVVTNDVDHKLIADSHMD-VTTRDFYDLFSQETRRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKLRLNFLEPTKSRGPWLAENYPELVVVLPRASYRG--RQSFAVEVWFVWWK 441
            V  LL H+++ G +L+ C  +  A S  L   GL V+T D     IAD+  D  TT  ++    Q  +  DW+V++PP+ +A  I  +A      GVAF LRL++LEP K RG WLAE+ P+L+V LPR S+ G  +       W +W K
Sbjct:   26 VDTLLNHIDITGTLLEPCNGSG-AISNRLKEDGLSVITTD-----IADNPQDDATTHQYW----QRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPPKLIV-LPRISFTGDGKVDSCTCAWMIWKK 164          
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.070e-18
Identity = 49/132 (37.12%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   52 CGSTRDAPSMVLTGYGLHVVTNDVDHKLIADSHMDVTTRDFYDLF--SQETRRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKLRLNFLEPTKSRGPWLAENYPELVVVLPRASY-RGRQSFAVEVWFVWW 438
            CG   DA +  L      ++TNDV     AD++++ +   F + F  +   +RP+W+V+SPPY  A    + A+ +  KGVAFK+ + FLEP   RG WL  N P + V L RA Y R   +   E W VW+
Sbjct:    2 CGGPTDAVATRLRST-CEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWY 132          
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.780e-14
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query:  283 GVAFKLRLNFLEPTKSRGPWLAENYPELVVVLPRASYRGRQSFAVEVWFVW 435
            GVAFKLRL FL P KSRG WL +N P+ +V+LPRA+YR R+  + E WFVW
Sbjct:    2 GVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVW 52          
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.280e-13
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  139 ADSHMDVTTRDFYDLF--SQETRRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKLRLNFLEPTKSRGPWLAENYPELVVVLPRASY-RGRQSFAVEVWFVWW 438
            AD+++D +   F + F  +   +RP+W+V+SPPY  A    + A+ +  KGV FK+ ++ LEP   RG WL  N P + + L RA Y R   +   E W VW+
Sbjct:  137 ADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVWY 239          
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.430e-9
Identity = 41/77 (53.25%), Postives = 46/77 (59.74%), Query Frame = -2
Query:  150 GSTTTNSG*FSASHGPLLLVGSRKFSLNLNATPLRTIRNACCQIAKAFWYGGLETIQSGRRVSWLNRS*KSLVVTSM 380
            G TT  +     SH PL+LVGSRK SL+LNATP R I  A  +IAKA  YGGL T  SGRR S    S    VV S+
Sbjct:  160 GMTTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVASI 236          
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 8.840e-8
Identity = 50/161 (31.06%), Postives = 72/161 (44.72%), Query Frame = 1
Query:    7 ALLEHL--EVNGLVLDCCGSTRDAPSMVLTGYGLHVVTNDVDHKLIADSHMDVTTRDFYDLFSQETRRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKLRLNFLEPTKSRGPWLAENYPELVV----VLPRASYR------------GRQSFAVEVWFVW 435
            ALL  L  E+NG +L+         +  L G G  + TND+D     D   D T  D +          DW+V++PP+  A  I   A+   R GVAF LRL+++EP  +R  WL   Y + ++    + PR  +R            G  +  V  WFVW
Sbjct:   18 ALLARLGNEINGRILEPTAGAGQI-ARALAGNGRTIFTNDIDPNHGCDFASDAT--DPFAFCWGLYGGIDWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWL-NGYADKMIYQGALNPRPHFRKGEINPKTGKKYGTDNVTV-AWFVW 173          
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.410e-6
Identity = 38/109 (34.86%), Postives = 52/109 (47.71%), Query Frame = 1
Query:    1 VQALLEHLEVNGLVLDCCGSTRDAPSMVLTGYGLHVVTNDVDHKLIADSHMDVTTRDFYDLFSQET--RRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKLRLNFLEP 321
            V AL   + + G VLD CG   DA   V  G+G    TN           +D +   F D F ++   ++PDW+V+SPPY+ +      AL +  KGVA KL L    P
Sbjct:   55 VDALRAAVAITGCVLDMCGGPEDA---VAQGFG-GTCTN-----------LDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNP 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE1.190e-5056.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A252D8B1_9NOSO6.920e-2038.67Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG... [more]
D8LSI1_ECTSI3.070e-1837.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6T5_9PHAE1.780e-1462.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU02_9PHAE2.280e-1336.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6X2_9PHAE2.430e-953.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V5ZCZ4_9BACT8.840e-831.06Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A6H5L1N5_9PHAE2.410e-634.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig198contigP-littoralis_Contig198:147285..148102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog211165.AJLN01000060_gene3855
Preferred nameksgA
PFAMsCTP_transf_like,Glyco_trans_1_4,Glycos_transf_2,Methyltransf_11,Methyltransf_12,Methyltransf_23,RrnaAD
Model size441
Max annot lvl2|Bacteria
KEGG rclassRC00003,RC03257
KEGG koko:K02528,ko:K20444
KEGG TC4.D.1.3
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000179,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Exons2
Evalue7.57e-12
EggNOG OGsCOG0030@1|root,COG0030@2|Bacteria
EC2.1.1.182
DescriptionrRNA (adenine-N6,N6-)-dimethyltransferase activity
Cds size441
COG categoryJ
CAZyGT2,GT4
BRITEko00000,ko01000,ko01005,ko02000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789948.4331598-CDS-P-littoralis_Contig198:147284..1475941680789948.4331598-CDS-P-littoralis_Contig198:147284..147594Pylaiella littoralis U1_48CDSP-littoralis_Contig198 147285..147594 -
1680789948.4457846-CDS-P-littoralis_Contig198:147971..1481021680789948.4457846-CDS-P-littoralis_Contig198:147971..148102Pylaiella littoralis U1_48CDSP-littoralis_Contig198 147972..148102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig198.39.2prot_P-littoralis_Contig198.39.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig198 147285..148102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig198.39.2

>prot_P-littoralis_Contig198.39.2 ID=prot_P-littoralis_Contig198.39.2|Name=mRNA_P-littoralis_Contig198.39.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp
VQALLEHLEVNGLVLDCCGSTRDAPSMVLTGYGLHVVTNDVDHKLIADSH
MDVTTRDFYDLFSQETRRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKL
RLNFLEPTKSRGPWLAENYPELVVVLPRASYRGRQSFAVEVWFVWWK
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mRNA from alignment at P-littoralis_Contig198:147285..148102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig198.39.2 ID=mRNA_P-littoralis_Contig198.39.2|Name=mRNA_P-littoralis_Contig198.39.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=818bp|location=Sequence derived from alignment at P-littoralis_Contig198:147285..148102- (Pylaiella littoralis U1_48)
GTGCAGGCTCTTTTGGAACACTTGGAAGTGAACGGCCTAGTTCTCGATTG CTGTGGTTCCACTCGAGACGCTCCCAGCATGGTTCTCACAGGATACGGTC TCCACGTTGTTACGAACGACGTCGATCACAAGTACGTGCTGCAGAGTCTT GTCATTGCCCCACGGCCTCGTGCTGTCTTGTGTTTGCATCGATGTGCTCC GGTCAAAATGTTCTTCGTAGGGCTGTCGTAGCAAAATAATGTGGAAGAAA CACGAAATGTTTGGGCGCCATGGCAAGTGCCATGCCACGTGCCGTCTCTG ACCCACCTGACGAGCGCCGACGTCCGTTGTCGTACACGAAACACCGAAAA AATCTTGGTGTGCGTACCCGGCGGGTGCAAACCAACCGTTGGACGTAACT CATCAATTACCACCGATGGTGCCTGCACTTTTTTCATCTCGCCTTCCCCC GTAGCGATATCTGACTATTTTTTTAACTGTTGCTGCACGATCGAAATACA ACTCGCAGGTTGATTGCGGATAGCCACATGGACGTTACGACGAGAGATTT TTACGACCTATTCAGCCAGGAAACGCGCCGCCCGGACTGGATTGTCTCTA GCCCACCGTACCAAAACGCCTTCGCTATTTGGCAGCAGGCGTTACGGATT GTGCGCAAAGGAGTGGCGTTCAAGTTGAGGCTGAATTTCCTTGAGCCCAC CAAAAGTAGGGGGCCGTGGCTCGCAGAGAACTATCCCGAGTTGGTGGTAG TGCTCCCACGCGCTTCCTACCGCGGTAGACAAAGTTTCGCGGTAGAGGTG TGGTTCGTATGGTGGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig198:147285..148102-

>mRNA_P-littoralis_Contig198.39.2 ID=mRNA_P-littoralis_Contig198.39.2|Name=mRNA_P-littoralis_Contig198.39.2|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig198:147285..148102- (Pylaiella littoralis U1_48)
GTGCAGGCTCTTTTGGAACACTTGGAAGTGAACGGCCTAGTTCTCGATTG
CTGTGGTTCCACTCGAGACGCTCCCAGCATGGTTCTCACAGGATACGGTC
TCCACGTTGTTACGAACGACGTCGATCACAAGTTGATTGCGGATAGCCAC
ATGGACGTTACGACGAGAGATTTTTACGACCTATTCAGCCAGGAAACGCG
CCGCCCGGACTGGATTGTCTCTAGCCCACCGTACCAAAACGCCTTCGCTA
TTTGGCAGCAGGCGTTACGGATTGTGCGCAAAGGAGTGGCGTTCAAGTTG
AGGCTGAATTTCCTTGAGCCCACCAAAAGTAGGGGGCCGTGGCTCGCAGA
GAACTATCCCGAGTTGGTGGTAGTGCTCCCACGCGCTTCCTACCGCGGTA
GACAAAGTTTCGCGGTAGAGGTGTGGTTCGTATGGTGGAAG
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