mRNA_P-littoralis_Contig198.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig198.24.1
Unique NamemRNA_P-littoralis_Contig198.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig198.24.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.850e-41
Identity = 75/141 (53.19%), Postives = 97/141 (68.79%), Query Frame = 2 
Query:   11 AEELWEVAKHNPAGIRAWIGEKLGTIE--CGCVDPLPKWKKSCPNEVSTCGRQQAHLLSQLDMDEVMARQQSRAQSGDNVNYVLARTVRSNLQYNAAIEIGARGGGNQCQRGACFKQAVDMFSGLKMEGVPRAVVLALLRH 427
            ++ L + A  N  G+RA + E+  T    CGC  P P W KS P+ ++TCGRQQAH+++ + +  V+ RQ+ R   GDNV+YVLARTVR  LQY AA EIGA G GNQC+RG CF +A+ MF G  MEG+PR VVLALLR+
Sbjct:   83 SKALLQTAVGNSGGVRALLEEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQHVLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
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BLAST of mRNA_P-littoralis_Contig198.24.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.280e-25
Identity = 56/112 (50.00%), Postives = 71/112 (63.39%), Query Frame = 2 
Query:   11 AEELWEVAKHNPAGIRAWIGEKLGTIE--CGCVDPLPKWKKSCPNEVSTCGRQQAHLLSQLDMDEVMARQQSRAQSGDNVNYVLARTVRSNLQYNAAIEIGARGGGNQCQRG 340
            A  L + A  NP G+R+ + E+  T    CGC  PL +WKK          RQQAH+++ + +  V+ RQ++R   GDNV YVLARTVRSNLQY AA EIGA G GNQC+RG
Sbjct:   50 ATALLKTALENPGGVRSLLREQAETAAQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG 161
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BLAST of mRNA_P-littoralis_Contig198.24.1 vs. uniprot
Match: A0A6H5K9U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U2_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.010e-15
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:   41 NPAGIRAWIGEKLGTIE--CGCVDPLPKWKKSCPNEVSTCGRQQAHLLSQLDMDEVMARQQSRAQSGDNVNYVLARTVRS 274
            NP G+RA + E+  T    CGC  P P W KS P+ ++TCGRQQAH+++ + + E       R   GDNV+YVLARTVRS
Sbjct:   89 NPGGVRALLKEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQE-------RDSQGDNVSYVLARTVRS 161
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BLAST of mRNA_P-littoralis_Contig198.24.1 vs. uniprot
Match: A0A6H5K0E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E2_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.560e-7
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 2 
Query:   11 AEELWEVAKHNPAGIRAWIGEKLGTIECGCV--DPLPKWKKSCPNEVSTCGRQQAHLLSQLDMDEVMARQQSR 223
            A+ L + A  NP G+RA + E+  T   GC+   P P W  S P+ ++TCGRQQAH+++ + +  V +  +SR
Sbjct:   83 AKALLQAAVGNPGGVRALLKEQAVTAAKGCMCETPQPGWANSDPDRITTCGRQQAHIIAGVSIQTVGSLPRSR 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig198.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE1.850e-4153.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI1.280e-2550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9U2_9PHAE7.010e-1548.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0E2_9PHAE3.560e-738.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig198contigP-littoralis_Contig198:128704..130206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size588
Hectar predicted targeting categoryother localisation
Exons2
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789948.2822406-UTR-P-littoralis_Contig198:128703..1288931680789948.2822406-UTR-P-littoralis_Contig198:128703..128893Pylaiella littoralis U1_48UTRP-littoralis_Contig198 128704..128893 +
1680789948.3185587-UTR-P-littoralis_Contig198:130048..1302061680789948.3185587-UTR-P-littoralis_Contig198:130048..130206Pylaiella littoralis U1_48UTRP-littoralis_Contig198 130049..130206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789948.2961695-CDS-P-littoralis_Contig198:128893..1288991680789948.2961695-CDS-P-littoralis_Contig198:128893..128899Pylaiella littoralis U1_48CDSP-littoralis_Contig198 128894..128899 +
1680789948.3052993-CDS-P-littoralis_Contig198:129814..1300481680789948.3052993-CDS-P-littoralis_Contig198:129814..130048Pylaiella littoralis U1_48CDSP-littoralis_Contig198 129815..130048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig198.24.1prot_P-littoralis_Contig198.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig198 128894..130048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig198.24.1

>prot_P-littoralis_Contig198.24.1 ID=prot_P-littoralis_Contig198.24.1|Name=mRNA_P-littoralis_Contig198.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=80bp
MDEVMARQQSRAQSGDNVNYVLARTVRSNLQYNAAIEIGARGGGNQCQRG
ACFKQAVDMFSGLKMEGVPRAVVLALLRH*
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mRNA from alignment at P-littoralis_Contig198:128704..130206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig198.24.1 ID=mRNA_P-littoralis_Contig198.24.1|Name=mRNA_P-littoralis_Contig198.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1503bp|location=Sequence derived from alignment at P-littoralis_Contig198:128704..130206+ (Pylaiella littoralis U1_48)
ATCTGCCTGGGCTGAAGAGCTGTGGGAAGTAGCCAAGCACAACCCTGCTG
GGATACGCGCCTGGATAGGAGAGAAGCTCGGTACGATCGAGTGTGGATGC
GTGGATCCTCTCCCGAAATGGAAAAAAAGTTGCCCCAACGAGGTCAGCAC
ATGCGGCAGGCAGCAGGCCCATCTCCTCTCCCAGCTGGACATGGATGTAA
GTGTGTACGTCTGGGAGTGTCTGTCCACGTGCAGACAACAACAGTGGGCT
CTGGAATGATGGTAGATAAAGAACATAAGGCGCCCCCTGTCCCGAAGCAC
TCAGAGAGCAAGTCGGCGCGGTCGGGAACTGTAGTCCGACATAACACACA
ACGATGCCACTCTTCTGTTCTTGGTGTACTAGCGCAAAACCTACAGAAAC
ACGGTTATCTCATACCGGTATGATGTGCAGCAGTACCAGGCATACAGCAG
AACAAAGTAGATACTGCTGTACTTCAGTAAAATTGAAATCATACACAGCA
GTAGACAGCAGTGCTTTTTACAGCAGTACTGTTCAAGCCTTCGAGCATGC
TTGGTACAAAGCAGTACTTCGAAGTACCTTTTTACAGCAGTAATACCGGA
CAAGCCTTGAACATGCTTGGTACAAATCATGCTACTTTGTTGTTTTTTTA
ACTTACAAACACAGTGATGTCTTGGTAAGAAAAAAATAAAAAATAAAAAA
TAAAAACATCAATGTGTTCGCCTCTCTCCAGACTACTTTTCTGATATTAT
CAGACAAATTGCATGCATACAAGTGTGTTGTCATCCCATTAATTGGACGC
CACTCTACTCTTCCGGGTAGGTAGACGCTCCAACCGGGGTCACAAAGTAG
GAAGTCAACACAGGAGTGTTTTCTTTTATTTATTTTTCTTTTCTTTCTAT
GCTTCCCACTGCGGTACTTGCCTTCATTTTTTCTCGCGATAAAGGGTACA
GCCATCCTTTTCCCTCGTCGACACTTCGGATTTTGTTTACTCACGAATTG
ATCATTTTCCACCCTCACGCATGTCATGAGAAGAATTCCGGATCGTGTTA
CTTTAGTAATAGTCCCACACGCCCTCATCCCGCCCTCCCGCCCCCCTTGC
ACGTGCTACAGGAAGTGATGGCTAGGCAACAAAGCAGGGCACAGTCTGGC
GACAACGTCAACTACGTTCTTGCGCGGACGGTGCGGAGCAATCTGCAGTA
CAACGCGGCCATCGAGATCGGGGCGAGGGGTGGTGGGAATCAGTGCCAAC
GCGGCGCGTGCTTCAAACAGGCCGTTGATATGTTTTCTGGCCTCAAAATG
GAGGGTGTCCCTCGAGCGGTTGTGCTAGCGTTGCTGAGGCACTAAAAAAA
AAGCTTTTTTTTAGGCTTGCAAGATGGCTGTTTTTGCTGTAAGTGAATAT
TGAGGCAAATGCGGCCTATATGTTGGGCATGGTCTTGTACACTTTGCGTG
CTCGTTTCGCGTGCACCGGTTGAAGGCATCCTTGGCAGTACTGAGATCAG
AAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig198:128704..130206+

>mRNA_P-littoralis_Contig198.24.1 ID=mRNA_P-littoralis_Contig198.24.1|Name=mRNA_P-littoralis_Contig198.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig198:128704..130206+ (Pylaiella littoralis U1_48)
ATGGATGAAGTGATGGCTAGGCAACAAAGCAGGGCACAGTCTGGCGACAA
CGTCAACTACGTTCTTGCGCGGACGGTGCGGAGCAATCTGCAGTACAACG
CGGCCATCGAGATCGGGGCGAGGGGTGGTGGGAATCAGTGCCAACGCGGC
GCGTGCTTCAAACAGGCCGTTGATATGTTTTCTGGCCTCAAAATGGAGGG
TGTCCCTCGAGCGGTTGTGCTAGCGTTGCTGAGGCACTAA
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