mRNA_P-littoralis_Contig198.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig198.53.1
Unique NamemRNA_P-littoralis_Contig198.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig198.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig198contigP-littoralis_Contig198:253131..253450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size320
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789947.3473577-CDS-P-littoralis_Contig198:253132..2534501680789947.3473577-CDS-P-littoralis_Contig198:253132..253450Pylaiella littoralis U1_48CDSP-littoralis_Contig198 253133..253450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig198.53.1prot_P-littoralis_Contig198.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig198 253133..253450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig198.53.1

>prot_P-littoralis_Contig198.53.1 ID=prot_P-littoralis_Contig198.53.1|Name=mRNA_P-littoralis_Contig198.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
AAWATEQQNELLCAATLRYHSLGLPNNPSTHFIDNFLPAYADRLLPHRSA
GSLSSPPPSSHTETPSRPDVVDVVNFARLTCLHRTDDDTTLLVMLPKAAR
TSKLSG
back to top

mRNA from alignment at P-littoralis_Contig198:253131..253450-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig198.53.1 ID=mRNA_P-littoralis_Contig198.53.1|Name=mRNA_P-littoralis_Contig198.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=320bp|location=Sequence derived from alignment at P-littoralis_Contig198:253131..253450- (Pylaiella littoralis U1_48)
GCCGCTTGGGCCACCGAACAACAAAACGAGCTCCTCTGCGCCGCTACTCT
CCGCTACCACTCCTTGGGCCTTCCCAACAACCCCTCCACACATTTTATCG
ACAACTTTCTCCCCGCCTACGCCGACCGCCTTCTTCCGCATCGATCCGCC
GGCTCCCTTTCTTCTCCTCCGCCCTCCAGCCACACCGAGACACCCTCCCG
TCCTGATGTTGTGGACGTAGTCAACTTTGCCCGACTCACTTGCTTACACC
GCACCGACGACGACACCACCTTGCTCGTTATGCTCCCCAAAGCTGCCCGT
ACTTCCAAACTTTCCGGTCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig198:253131..253450-

>mRNA_P-littoralis_Contig198.53.1 ID=mRNA_P-littoralis_Contig198.53.1|Name=mRNA_P-littoralis_Contig198.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig198:253131..253450- (Pylaiella littoralis U1_48)
GCCGCTTGGGCCACCGAACAACAAAACGAGCTCCTCTGCGCCGCTACTCT
CCGCTACCACTCCTTGGGCCTTCCCAACAACCCCTCCACACATTTTATCG
ACAACTTTCTCCCCGCCTACGCCGACCGCCTTCTTCCGCATCGATCCGCC
GGCTCCCTTTCTTCTCCTCCGCCCTCCAGCCACACCGAGACACCCTCCCG
TCCTGATGTTGTGGACGTAGTCAACTTTGCCCGACTCACTTGCTTACACC
GCACCGACGACGACACCACCTTGCTCGTTATGCTCCCCAAAGCTGCCCGT
ACTTCCAAACTTTCCGGT
back to top