mRNA_P-littoralis_Contig197.100.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig197.100.1
Unique NamemRNA_P-littoralis_Contig197.100.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig197.100.1 vs. uniprot
Match: D8LS42_ECTSI (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS42_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 1.060e-137
Identity = 222/291 (76.29%), Postives = 237/291 (81.44%), Query Frame = 3 
Query:   15 TQASSMTRHASGARVLTSLLVLLSCVSLSQAFGGISGRATSTSTATTTSGGRHACNNNRVGGLVSARPPSPVAGSPLRVSFALRSSTGDXXXXXXXXXXXXXXXXMFGGIQEWWERDGKSDLKIYGTSLALALLVRSVAVEPRFIPSLSMYPTFEIGDQLAVDKLSKKLSRPYQRKDVVVFYPPPKFSEFSNRGKGDALIKRVIAVGGDTVQIKDGSLFINGQEQFEDYTFEEPEYKWGPETVPVGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPPWRAGAIET 887
            T   +M R  SGAR L  LLVL S V LS+AFGGISGR T+TSTA T+   +H  +    GG V  R  SP+ G P RV   LRS  GD    XXXXX       +FGGIQEWWERDGKSDLKIYGTSLALAL+VRSVA+EPRFIPSLSM+PTFEIGDQLAVDKLS KLSRPYQRKDVVVFYPPPKF EFS+RGK DALIKRVIAVGGD VQIKDGSLF+NGQEQFEDYTFEEPEY WGP+TVP GMVMVLGDNRNHSLDSHIWGFLPTENVIGRA+FKYWPPWRAG IET
Sbjct:    4 TMHLAMVRRISGARALAGLLVLSSLVQLSRAFGGISGRTTATSTARTSGWRQHHAH----GGGVRHRSLSPIVGLPPRVPHGLRSEAGDGGQGXXXXXG------IFGGIQEWWERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGKKDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIET 284
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BLAST of mRNA_P-littoralis_Contig197.100.1 vs. uniprot
Match: A0A6H5KUG3_9PHAE (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUG3_9PHAE)

HSP 1 Score: 366 bits (940), Expect = 1.250e-119
Identity = 184/216 (85.19%), Postives = 192/216 (88.89%), Query Frame = 3 
Query:  240 PLRVSFALRSSTGDXXXXXXXXXXXXXXXXMFGGIQEWWERDGKSDLKIYGTSLALALLVRSVAVEPRFIPSLSMYPTFEIGDQLAVDKLSKKLSRPYQRKDVVVFYPPPKFSEFSNRGKGDALIKRVIAVGGDTVQIKDGSLFINGQEQFEDYTFEEPEYKWGPETVPVGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPPWRAGAIET 887
            P RV   LRS  GD    XXXXX       +FGGIQEWWERDGKSDLKIYGTSLALAL+VRSVA+EPRFIPSLSM+PTFEIGDQLAVDKLS KLSRPYQRKDVVVFYPPPKF EFS+RGK DALIKRVIAVGGD VQIKDGSLF+NGQEQFEDYTFEEPEY WGP+TVP GMVMVLGDNRNHSLDSHIWGFLPTENVIGRA+FKYWPPWRAG IET
Sbjct:    2 PPRVPHGLRSEAGDGGQGXXXXXG------IFGGIQEWWERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGKKDALIKRVIAVGGDVVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIET 211
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BLAST of mRNA_P-littoralis_Contig197.100.1 vs. uniprot
Match: A0A6T5N089_HETAK (Mitochondrial inner membrane protease subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5N089_HETAK)

HSP 1 Score: 265 bits (677), Expect = 1.090e-79
Identity = 130/183 (71.04%), Postives = 156/183 (85.25%), Query Frame = 3 
Query:  339 GIQEWWE-RDGKSDLKIYGTSLALALLVRSVAVEPRFIPSLSMYPTFEIGDQLAVDKLSKKLSRPYQRKDVVVFYPPPKFSEFSNRGKGDALIKRVIAVGGDTVQIKDGS-LFINGQEQFEDYTFEEPEYKWGPETVPVGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPPWRAGAI 881
            G+  W +  +GK DL+IYGTSLA+AL++R+  VEPR+IPSLSMYPTF+IGDQLAVDKLSK ++RPYQR+DVVVF PP  FS FS+R +G+ALIKRV+AV GD V+IKDG  LFING++Q E YT E+  Y+WGP+TVP G V+VLGDNRNHSLD H+WGFLPTEN+IGRAVFKYWPPWRAG I
Sbjct:   88 GLINWAQSEEGKEDLRIYGTSLAVALVLRTFVVEPRWIPSLSMYPTFDIGDQLAVDKLSK-VARPYQRRDVVVFTPPDAFSIFSDR-RGEALIKRVVAVAGDVVEIKDGGHLFINGEKQEEKYTNEDALYEWGPQTVPKGCVLVLGDNRNHSLDGHVWGFLPTENIIGRAVFKYWPPWRAGGI 268
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BLAST of mRNA_P-littoralis_Contig197.100.1 vs. uniprot
Match: A0A836CAW9_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW9_9STRA)

HSP 1 Score: 233 bits (594), Expect = 2.750e-69
Identity = 107/151 (70.86%), Postives = 127/151 (84.11%), Query Frame = 3 
Query:  432 VEPRFIPSLSMYPTFEIGDQLAVDKLSKKLSRPYQRKDVVVFYPPPKFSEFSNRGKGDALIKRVIAVGGDTVQIKDGSLFINGQEQFEDYTFEEPEYKWGPETVPVGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPPWRAGAIE 884
            +EPR+IPSLSM+PTFE+GDQLAV+K+++   RPY R DVVVFYPP  FS FS RG  +ALIKR++AV GDTVQI+ G +++NGQ Q E +  ++PEY+WGP  VP G VMVLGDNRNHSLDSHIWGFLP ENVIGRAVFKYWPPWRAGA+E
Sbjct:    1 MEPRYIPSLSMFPTFEVGDQLAVEKVTRYY-RPYSRHDVVVFYPPEAFSLFSARGTDEALIKRIVAVEGDTVQIRGGKVYLNGQAQDEPFVTDKPEYEWGPMVVPAGKVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGAVE 150
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BLAST of mRNA_P-littoralis_Contig197.100.1 vs. uniprot
Match: A0A7S2S8J5_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J5_9STRA)

HSP 1 Score: 237 bits (604), Expect = 4.220e-69
Identity = 118/184 (64.13%), Postives = 142/184 (77.17%), Query Frame = 3 
Query:  345 QEWW-ERDGKSDLKIYGTSLALALLVRSVAVEPRFIPSLSMYPTFEIGDQLAVDKLSKKLSRPYQRKDVVVFYPPPKFSEFSNRG-KGDALIKRVIAVGGDTVQIKDG-SLFINGQEQFEDYTFEEPEYKWGPETVPVGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPPWRAGAIET 887
            Q WW + D ++++K Y  SL LALL R+  VEPRFIPSLSM+PTF++GDQLAVDK+SK + RPY+R DVVVF PP  F +    G K +ALIKRV+AV GD V++KDG +L++NG  Q E +T E+  Y WGP  VP GM+MVLGDNRNHSLDSH+WGFLP ENVIGRAVFKYWP WR G IET
Sbjct:   79 QRWWADEDLRAEVKSYTVSLGLALLFRAFIVEPRFIPSLSMFPTFDVGDQLAVDKISKVV-RPYERNDVVVFTPPQAFFDVMGSGTKKEALIKRVVAVAGDVVEMKDGGTLYVNGVPQPEGFTNEKAFYDWGPREVPAGMLMVLGDNRNHSLDSHVWGFLPKENVIGRAVFKYWPVWRLGLIET 261
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BLAST of mRNA_P-littoralis_Contig197.100.1 vs. uniprot
Match: B8BZJ0_THAPS (Mitochondrial inner membrane protease subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZJ0_THAPS)

HSP 1 Score: 229 bits (583), Expect = 3.280e-67
Identity = 110/181 (60.77%), Postives = 140/181 (77.35%), Query Frame = 3 
Query:  348 EWWERD-GKSDLKIYGTSLALALLVRSVAVEPRFIPSLSMYPTFEIGDQLAVDKLSKKLSRPYQRKDVVVFYPPPKFSEF---SNRGKGDALIKRVIAVGGDTVQIKDGSLFINGQEQFEDYTFEEPEYKWGPETVPVGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPPWRAGA 878
            EW+  D GK D+K Y  SL +ALL+R + +EPR+IPSLSM+PTFE+GDQLAV+K++K++ RP+ R +VVVF+PP KF E    ++R   +ALIKR++A  GD V++  G LF+NG EQ E +T E+ EY +GP  VP G V+VLGDNRNHSLD HIWGFLPTENVIGRAVF YWPPWR G+
Sbjct:    1 EWFASDEGKEDVKTYTVSLGVALLLRLLIIEPRYIPSLSMFPTFEVGDQLAVEKVTKRI-RPFSRNEVVVFHPPMKFREIVGDTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGVEQEEPFTAEDAEYDFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPTENVIGRAVFVYWPPWRCGS 180
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BLAST of mRNA_P-littoralis_Contig197.100.1 vs. uniprot
Match: A0A6V1AJW1_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V1AJW1_9STRA)

HSP 1 Score: 232 bits (592), Expect = 4.360e-67
Identity = 115/187 (61.50%), Postives = 145/187 (77.54%), Query Frame = 3 
Query:  330 MFGGIQEWWERD-GKSDLKIYGTSLALALLVRSVAVEPRFIPSLSMYPTFEIGDQLAVDKLSKKLSRPYQRKDVVVFYPPPKFSEF---SNRGKGDALIKRVIAVGGDTVQIK-DGSLFINGQEQFEDYTFEEPEYKWGPETVPVGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPPWRAG 875
             F  IQEW+  D GK D+K Y  SL++ALL+R + +EPR+IPSLSMYPTFE+GDQLAV+K++K++ RP+ R +VVVF PP +F E    S+R   +ALIKR++AV GDTV++K  G LF+NG +Q E +T E+ EY++GP  VP G V+VLGDNRNHSLD HIWGFLP ENVIGRAVF YWPPWR G
Sbjct:   96 FFEQIQEWFASDEGKEDVKTYTVSLSVALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRI-RPFNRNEVVVFNPPERFRELVGESSRKSKEALIKRIVAVEGDTVEVKMGGKLFVNGVQQDEPFTAEDAEYEFGPVIVPPGDVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVG 281
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BLAST of mRNA_P-littoralis_Contig197.100.1 vs. uniprot
Match: K0S0N9_THAOC (Mitochondrial inner membrane protease subunit n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S0N9_THAOC)

HSP 1 Score: 229 bits (584), Expect = 6.270e-66
Identity = 109/186 (58.60%), Postives = 141/186 (75.81%), Query Frame = 3 
Query:  330 MFGGIQEWW-ERDGKSDLKIYGTSLALALLVRSVAVEPRFIPSLSMYPTFEIGDQLAVDKLSKKLSRPYQRKDVVVFYPPPKFSEF---SNRGKGDALIKRVIAVGGDTVQIKDGSLFINGQEQFEDYTFEEPEYKWGPETVPVGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPPWRAG 875
             F  +QEW+   +GK D++ Y TSL +ALL+R + +EPR+IPSLSMYPTFE+GDQLAV+K++K++ RP  R +VVVF PP  F E    ++R   +ALIKR++A  GD V++  G LF+NG+EQ E +T E+ +Y++GP  VP G V+VLGDNRNHSLD HIWGFLP ENVIGRAVF YWPPWR G
Sbjct:   97 FFEQVQEWFASEEGKEDVRTYTTSLGIALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRI-RPLNRNEVVVFNPPTSFKEIVGDTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGKEQDEPFTAEDAQYEFGPVLVPAGEVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVG 281
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BLAST of mRNA_P-littoralis_Contig197.100.1 vs. uniprot
Match: A0A7R9WYP6_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYP6_9STRA)

HSP 1 Score: 229 bits (584), Expect = 1.230e-65
Identity = 114/190 (60.00%), Postives = 140/190 (73.68%), Query Frame = 3 
Query:  330 MFGGIQEWWERD-GKSDLKIYGTSLALALLVRSVAVEPRFIPSLSMYPTFEIGDQLAVDKLSKKLSRPYQRKDVVVFYPPPKFSEFSNRGKG-------DALIKRVIAVGGDTVQIKDGSLFINGQEQFEDYTFEEPEYKWGPETVPVGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPPWRAG 875
            +  GIQ W + D GK D+K Y TSLALALL+R   +EPRFIPSLSMYPTF++GDQLAV+K++K++ +P  R++VVVF PP  F E      G       +ALIKR++A+ GD V++K G L+ING  Q E YT E+ EY++GP  VP G V+VLGDNRNHSLD HIWGFLP ENVIGRAVF YWPPWR G
Sbjct:  115 ILSGIQRWLKSDEGKEDIKTYFTSLALALLLRFTIIEPRFIPSLSMYPTFDVGDQLAVEKVTKRI-KPLYRREVVVFNPPATFREVIVNDYGQDPKRAKEALIKRIVAIEGDQVEVKKGKLYINGDLQNEPYTAEDAEYEFGPVVVPEGAVLVLGDNRNHSLDGHIWGFLPQENVIGRAVFVYWPPWRLG 303
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BLAST of mRNA_P-littoralis_Contig197.100.1 vs. uniprot
Match: A0A7S1E4I6_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E4I6_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.690e-64
Identity = 109/181 (60.22%), Postives = 135/181 (74.59%), Query Frame = 3 
Query:  366 GKSDLKIYGTSLALALLVRSVAVEPRFIPSLSMYPTFEIGDQLAVDKLSKKLSRPYQRKDVVVFYPPPKFSEF-----------SNRGKGDALIKRVIAVGGDTVQIKDGSLFINGQEQFEDYTFEEPEYKWGPETVPVGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAVFKYWPPWRAG 875
            G+ D+  Y  SLA+ALL+R   VEPRFIPSLSMYPTF+IGDQLAV+K++K L RP+ RK+VVVF PP  F E            +N+   +ALIKR++A+ GD V+I++G L+ING+ Q E +T E+  Y++GP TVP G V+VLGDNRNHSLD HIWGFLP ENVIGRAVF YWPPWR G
Sbjct:    1 GREDINTYVVSLAVALLLRFFIVEPRFIPSLSMYPTFDIGDQLAVEKVTK-LIRPFSRKEVVVFNPPSAFREALYGQINVDSAAANKKAKEALIKRIVAIEGDVVKIREGKLYINGEPQDEPFTAEDAAYEFGPVTVPPGQVLVLGDNRNHSLDGHIWGFLPKENVIGRAVFVYWPPWRLG 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig197.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS42_ECTSI1.060e-13776.29Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A6H5KUG3_9PHAE1.250e-11985.19Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A6T5N089_HETAK1.090e-7971.04Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A836CAW9_9STRA2.750e-6970.86Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S2S8J5_9STRA4.220e-6964.13Mitochondrial inner membrane protease subunit n=1 ... [more]
B8BZJ0_THAPS3.280e-6760.77Mitochondrial inner membrane protease subunit (Fra... [more]
A0A6V1AJW1_9STRA4.360e-6761.50Mitochondrial inner membrane protease subunit n=1 ... [more]
K0S0N9_THAOC6.270e-6658.60Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7R9WYP6_9STRA1.230e-6560.00Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S1E4I6_9STRA2.690e-6460.22Mitochondrial inner membrane protease subunit n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig197contigP-littoralis_Contig197:415963..420812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LS42
Preferred nameTPP1
PFAMsPeptidase_S24,Peptidase_S26
Model size2218
Max annot lvl2759|Eukaryota
KEGG koko:K03100
KEGG Pathwayko02024,ko03060,map02024,map03060
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0051604,GO:0055035,GO:0061024,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564
Exons4
Evalue1.05e-144
EggNOG OGsCOG0681@1|root,KOG0171@2759|Eukaryota
Ec32 ortholog descriptionSignal peptidase I (SPase I) (Leader peptidase I)
Ec32 orthologEc-12_004880.1
EC3.4.21.89
Descriptionserine-type peptidase activity
Cds size861
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig197.100.1prot_P-littoralis_Contig197.100.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig197 415992..419484 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789947.1267881-UTR-P-littoralis_Contig197:415962..4159911680789947.1267881-UTR-P-littoralis_Contig197:415962..415991Pylaiella littoralis U1_48UTRP-littoralis_Contig197 415963..415991 +
1680789947.1885006-UTR-P-littoralis_Contig197:419484..4208121680789947.1885006-UTR-P-littoralis_Contig197:419484..420812Pylaiella littoralis U1_48UTRP-littoralis_Contig197 419485..420812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789947.140183-CDS-P-littoralis_Contig197:415991..4163011680789947.140183-CDS-P-littoralis_Contig197:415991..416301Pylaiella littoralis U1_48CDSP-littoralis_Contig197 415992..416301 +
1680789947.1509993-CDS-P-littoralis_Contig197:417889..4181551680789947.1509993-CDS-P-littoralis_Contig197:417889..418155Pylaiella littoralis U1_48CDSP-littoralis_Contig197 417890..418155 +
1680789947.1629934-CDS-P-littoralis_Contig197:418676..4187811680789947.1629934-CDS-P-littoralis_Contig197:418676..418781Pylaiella littoralis U1_48CDSP-littoralis_Contig197 418677..418781 +
1680789947.1766274-CDS-P-littoralis_Contig197:419304..4194841680789947.1766274-CDS-P-littoralis_Contig197:419304..419484Pylaiella littoralis U1_48CDSP-littoralis_Contig197 419305..419484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig197.100.1

>prot_P-littoralis_Contig197.100.1 ID=prot_P-littoralis_Contig197.100.1|Name=mRNA_P-littoralis_Contig197.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=287bp
MTRHASGARVLTSLLVLLSCVSLSQAFGGISGRATSTSTATTTSGGRHAC
NNNRVGGLVSARPPSPVAGSPLRVSFALRSSTGDDSSQGGGGAGGGGDGG
MFGGIQEWWERDGKSDLKIYGTSLALALLVRSVAVEPRFIPSLSMYPTFE
IGDQLAVDKLSKKLSRPYQRKDVVVFYPPPKFSEFSNRGKGDALIKRVIA
VGGDTVQIKDGSLFINGQEQFEDYTFEEPEYKWGPETVPVGMVMVLGDNR
NHSLDSHIWGFLPTENVIGRAVFKYWPPWRAGAIET*
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mRNA from alignment at P-littoralis_Contig197:415963..420812+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig197.100.1 ID=mRNA_P-littoralis_Contig197.100.1|Name=mRNA_P-littoralis_Contig197.100.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4850bp|location=Sequence derived from alignment at P-littoralis_Contig197:415963..420812+ (Pylaiella littoralis U1_48)
TTTTTCGTCTGGACACGCAGGCGTCGAGCATGACTAGACACGCTTCGGGC
GCCCGTGTCTTGACAAGCTTGCTGGTACTTCTCTCATGCGTGTCGCTATC
CCAAGCGTTCGGCGGAATCTCGGGAAGAGCAACGTCAACGTCAACAGCAA
CAACAACGAGCGGTGGTCGACATGCATGCAACAACAATAGAGTAGGAGGT
CTTGTCTCCGCTAGACCACCTTCACCTGTTGCCGGGTCACCGCTACGAGT
GTCATTCGCCTTGCGGTCGTCTACCGGTGATGACAGCAGCCAGGGAGGAG
GAGGAGCGGGTGGCGGTGGTGACGGTGGCATGTTTGGAGGTAACGTGAAA
TCAGAACATGAAACATGAATCACCTCGGACAGATGCGGCGCAACTAGCAC
AGCAGGCGGTGCCGGTTGATTGGTACGAAGTATCGGTGGTCTGCTGCTCG
CTGCTTGCTGTACCCTTTTTTGTGTCTTAATTTCGTATGTGAGTACAACA
TTGAATAGCAGCAGAGAAAATCCGTTTCCACTCTGTCCTAGTGCGTTTCT
AAAAATTTCTGATTGTTTTCACAGCGATGGGCACCGCCGTCAGTGCTGTT
TCTGCTTTCAATAAAAACATGTCAGAAAATGTTGGCCATCATGGCCTTCT
CGTCAGGCGTGGAGTGCGCGAAAGCACGCGCTTCACAGCCCACCCATCCC
ATAATCGCAGACGCCAAATGGGATCCGAGACGAAACAGCTTACAAGCACC
CCAGTATTCCTTGCAATCCAGGCTCTACCTTGACTGCGCCAACCAGAGCA
CAGCAGTGGCATCGATCGACACGCTGGACTTTGAATGTGCGGAAAATACG
CTATGATACAAGCATCGCTGCCGTCTGTCCTATTTACACATATCTGTAGA
CTTATCATCATCTTCGGCTAAAGAAACAAGCGTGTCTGTGACAAGAAAAT
CTTCGATTTACCGCCGTCCTCGCGCACCTTTCATGATAGCGGTGGCTCCA
CGATTTAGCTTAGTTTAAGCAAGAGGGGTTTCTTCAATTCTTCAGAGGGC
TTCGAGGTTCGCAATATCGAAATTTGTGTGTCGCCAATCGCGTGTTATTC
ACCACCGCACAACGCGCGTCGGCGTGAAAACAGACGACATCTGCTACACC
AATGGACACACCAAACGTTGCGCTGCGCGAGCGTGATCAAAAGCCCCTCA
AAAACCTTCAGCAAGTGCCTTAACAAAACCGCCAGGTGCGTAACGGCGGG
AGGTGATATCGTATGATGCGACTAAGGAGGCCTAGTGCTGTAAGAGGACG
GGTGCGCGGGGGGTTGGGGGGCAGGAGATATCGGCGGAAGTTCGTATTTC
CGGGGCACGTTGTTATATGTAACCCTGGCTGGTGCACCCACTTCGTGCCG
AATGGTGTAGACTGGTGCCCAGAATAAATGGGACGAAAGCACACACACAC
TTCAAAGTATGAACAATAGGCAATCATCATTAACCTTCCGCGGCATCTCT
TGGCCTTGGCAGTGTAAACAGGGTGTATGCATGTTGTTGGTGCAGGCTTT
TCCAGATTTGCCCATTAAGCGCCTGCACGACACTACGACCGTATGCCCGT
CATCACTGCTGCTGCAAGCTGTTTGTCTGCAGTCAGCCAGGGCTCCAGAG
AGTGGTAAGACGATGGAAATTCAGACGCCAACGTGTCACCTTCGCGGCGC
AAGAAAATCAGGATCACTCAATGCTTTACAGCGATGCATCCCCCACCGTG
CGACACCACGCATTGATCGCAACGAACGGGGGACCGACCGATCGACGCAG
CTCCGCCGGGGCTGAGGCTGAGCTACTGTAAACAACCTCAGACAGAGATC
AATAGACTAAACCAGACCAACCCAGAGACAGCCGAACAAACCCACCTCTG
AAACTGTGCGAATGATCCGACGCCCAGGGATTCAAGAGTGGTGGGAGAGG
GACGGCAAGTCGGACCTTAAGATCTACGGGACCTCCCTGGCGCTGGCGCT
GCTGGTGAGGTCGGTGGCCGTCGAGCCGCGCTTTATCCCTTCCTTGTCCA
TGTACCCCACCTTCGAGATCGGGGACCAGCTGGCGGTGGACAAGCTGTCG
AAGAAGCTCTCTCGCCCTTACCAGAGGAAGGACGTGGTCGTGTTCTACCC
GCCGCCCAAGTTCAGCGAGTTTTCCAACAGGGGAAAAGGCGACGTGAGTA
AGAGACAGAGAGAGAAGACACTAAGCACAAACTGGAAACAGGGTTTGCGG
GGGGCTTCAGCCCCCCACGCTCGTGTAGCGAGTGTGTGAAGTGTAGGAGA
TGACGCAATGAAGATCTGCAAACGTTGGAGTGAAGGGATTCGTTAGATGT
GTGTGGGGCGCATGATGTAGTCTATAAGGTTGTCGAGTATGTGTATTCGG
GAGATAGAGATTGAGAGAAAAAGGCTGACCCGGCTCTGTGATACTTACGT
TAACTCCACAGTAGGTGACAACCGAAAATGAAATACCAGCGTTTCGATTA
CGTTGGTATCCACTCACACTACGAAGTACGAAGTATCATAGCATACGTTT
CAGGACGAGCGGCTCTTAGGCCACTTTGAGCTTTGTGCTGGAATTTTTGG
TAACCTCCGAGTCTATGTATCTGCGTGCCTCGCACCCGCTCTTGATGTGT
GAAACCTTTCTTCTTCCCCCCCCCTCCCCCCTCTGCCCCCTCTCCCGGCG
CGGGGTTTATCCAGGCGCTCATCAAGCGCGTCATCGCTGTGGGCGGGGAT
ACTGTGCAGATCAAGGACGGTTCGCTGTTCATCAACGGGCAGGAGCAGTT
TGAGGACTACACCTTCGAGGTGCGTTTCATATCGCACGTGCTTTTATTTT
TTAACACGATGGTGCTGGCTGCGGCTACGGCCGCGGCTGGCCGTCGCTAT
TCATATCTCACTTGCGGCTGCTTGTCTTGCCCCACACGGCGCGACCAATG
ATGCGGCTGCTGACGCTGATGCTGCTGTGTTGCGTAGCGTGCCACTCGAT
GGTGCGTGTGTAACTCACTCAGCCCTTCGTTCGGACCCCAGCCGGCAGTC
CGAACATACGTATCAGGACTTGCGAACTTGTGAAAACGGGTGGTATTTTT
CGCACCCGCTATTTTGTTCCAGGCGTCCATCGATGGCCCTGTGCGACCCG
ATACGACGCGACTAACCGCAATCATTCAATGCCGCTCTTCTTTCCCTTGG
GGGATCCGTCAACATGTTTTTGTGCTTACTTATGGAGGTACTTCTTTACG
TGTTTGTTTATAATGTGTCAGCCTTTGTATTTGACACACAAAGGATACGA
TGAGCACAAAATAATATTCTGCTGCTTTTATTTCACGACCAGGAACCGGA
ATACAAGTGGGGACCGGAGACGGTCCCCGTGGGCATGGTAATGGTCTTGG
GGGACAACCGGAACCACAGCCTAGACTCGCACATCTGGGGTTTCCTACCG
ACCGAGAACGTCATCGGAAGGGCCGTCTTCAAGTACTGGCCGCCGTGGCG
AGCGGGGGCTATTGAGACATGAATTGATTGCCGCAGGTAGACAGGGTCCT
CTGAGACAACTAGTCAGTGCAGAAGCGGCTAGCGCTCGTTCGAAGGGGCC
CTTCAATATGCATGCAGCTAGTGTCTCCCCCGCCTGCTTCATGTAGCTGC
TACGAAGTATATTTTGTTTTAGAGACCACGGGGGATTTTTGTAGAACACG
GGGAAGCGGGGTGTTTGAAAATAGATGTTCCAGTTTGACGGGTGCAGGGG
AGGGTCAGTTGTTAGCCTTGAACCAAAAGTTTGTGAACTTGACGAGTCCC
GGTTGTTTTGGAAAGAGGTACTGTAGTCATGGATCGATCTTGAATCGATT
TTTTGAGTTATTAACACGTTATCTGTGTTGTGAATTAGCTTTTTCCCTGT
GCGCGCGCACCCACACACCGCCAGTACCGTGCATAACAGACAGCTGTTTT
ATGCGTGGGTGATGCAGTTTTGCTTGCGTACGAAGAGAGATGCAGTTTTG
CTTGCGAACATAGACATGCATGCGATGGTTATTTTTTCCATGTCTCGGCA
AGCTTTCGTTTCCAGGATGGTGTCAAAGTGGTTGCGCCCCCGGCCCATCG
TAGTCGGCTGGTCGGCGAAACTCGTAGCAAAATCCCGACATGCACTCCGC
CCTGGCATTATTTGGCATGCCAAGGTCTTTCGGCAACATACGATACGACC
GGCCATGTATGAAGATTGATCGCGCAAAATAAGTGCCTGTTAGTCAACAA
GGTCTTGAAAGGGGGAGTGCGTGTGCGTAACGGTAAGAAGCTTGGTCTCC
TGCGGGGAGGAGCCATAAGAAATACCGGTAGACGACTGCTGTTTCGGCGA
TCGCCGTTGACGCTCAACAATCGTCCGTGTAGATTTTTGAGTCTGCCGAC
GGCGTGTGCTAAATCGAGACGGTGCCCGAAATAATGAATGTCCCTTCAGG
TTCGTTTTTAACCGAAAAAGCTCGTGCTGATTTAGCTCCACGATGCCGAG
TCAGAGCGGGAAGCTTCGATCCCGCGTCGGAATCAAGTGTGTTTTGTCTT
GGCCGCTTTTCTTTTCCAAATCTGATGCTGAGATTTAGTTGACTGAGTAC
GTTCCGCAATCATTTCTGACGGAATGCTGCTGCCGCTGGTCTGTTGCTGT
TGTAGAGTTGGAAGCCATGCATGTCTGTAGAAGATGGCTGCTTTGTGAAA
AAACAACGAAACAACCCCGTCCTTCTCGACATAGCGGGGGCTACTACGGT
GCTAGAAATAACGGCGGTGGTGCAGTTTTTGCTGATATATTACGCCGGAT
GTATCGAGGTTCGGCGCGCCCCCTTGGTGCGCGGTGCTCCCAGGACGGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig197:415963..420812+

>mRNA_P-littoralis_Contig197.100.1 ID=mRNA_P-littoralis_Contig197.100.1|Name=mRNA_P-littoralis_Contig197.100.1|organism=Pylaiella littoralis U1_48|type=CDS|length=861bp|location=Sequence derived from alignment at P-littoralis_Contig197:415963..420812+ (Pylaiella littoralis U1_48)
ATGACTAGACACGCTTCGGGCGCCCGTGTCTTGACAAGCTTGCTGGTACT
TCTCTCATGCGTGTCGCTATCCCAAGCGTTCGGCGGAATCTCGGGAAGAG
CAACGTCAACGTCAACAGCAACAACAACGAGCGGTGGTCGACATGCATGC
AACAACAATAGAGTAGGAGGTCTTGTCTCCGCTAGACCACCTTCACCTGT
TGCCGGGTCACCGCTACGAGTGTCATTCGCCTTGCGGTCGTCTACCGGTG
ATGACAGCAGCCAGGGAGGAGGAGGAGCGGGTGGCGGTGGTGACGGTGGC
ATGTTTGGAGGGATTCAAGAGTGGTGGGAGAGGGACGGCAAGTCGGACCT
TAAGATCTACGGGACCTCCCTGGCGCTGGCGCTGCTGGTGAGGTCGGTGG
CCGTCGAGCCGCGCTTTATCCCTTCCTTGTCCATGTACCCCACCTTCGAG
ATCGGGGACCAGCTGGCGGTGGACAAGCTGTCGAAGAAGCTCTCTCGCCC
TTACCAGAGGAAGGACGTGGTCGTGTTCTACCCGCCGCCCAAGTTCAGCG
AGTTTTCCAACAGGGGAAAAGGCGACGCGCTCATCAAGCGCGTCATCGCT
GTGGGCGGGGATACTGTGCAGATCAAGGACGGTTCGCTGTTCATCAACGG
GCAGGAGCAGTTTGAGGACTACACCTTCGAGGAACCGGAATACAAGTGGG
GACCGGAGACGGTCCCCGTGGGCATGGTAATGGTCTTGGGGGACAACCGG
AACCACAGCCTAGACTCGCACATCTGGGGTTTCCTACCGACCGAGAACGT
CATCGGAAGGGCCGTCTTCAAGTACTGGCCGCCGTGGCGAGCGGGGGCTA
TTGAGACATGA
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