mRNA_P-littoralis_Contig197.48.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig197.48.3
Unique NamemRNA_P-littoralis_Contig197.48.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig197.48.3 vs. uniprot
Match: A0A6H5LM37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LM37_9PHAE)

HSP 1 Score: 326 bits (835), Expect = 3.580e-106
Identity = 179/253 (70.75%), Postives = 201/253 (79.45%), Query Frame = 2 
Query:  119 QEQPTPSREDVLRKDLLMLEAQRDALELEADAIASELKSPGANGEAPVGSKGPLVDSDGFPLAGFDLFNVREKRHRFNCIQTDHKAIMAKMENSLHALHEARAARPAPIPSSSSSTXXXXXXXXXXXXXXXXAVSGTSAFGANSGATLSLVPIAKVNEVSEGSPAATAGLSVGDLVLRFGGVDISHPRGLGGVVDVVREKEGQEVPVTVLR----SGGGGGVEEGARTGVVDLTLVPKTWSGRGLLGVHLLPP 865
            Q+Q  PS E+ LRK+L++L+AQRDALELEADAIASELKSPGANGEAPVG KG LVD+DGFPLAGFDLFNVREKRHRFNCIQTDHKA+M+++E SLHALH+AR ARP P+P++ S T                A S      A + A +SL PIAKVN+VSEGSPA+ AGL+VGDLVLRFG VDISHP+GLGGVVDVVREKEGQEVPVTVLR    SG GG V  G   GV +LTLVPKTWSGRGLLGVHLLPP
Sbjct:   12 QQQAIPSPEEALRKELVVLQAQRDALELEADAIASELKSPGANGEAPVGVKGALVDADGFPLAGFDLFNVREKRHRFNCIQTDHKAVMSRIEKSLHALHDARLARPTPLPTAFSVTAATPP-----------ASSLIGMDSAAAAADMSLAPIAKVNQVSEGSPASAAGLAVGDLVLRFGHVDISHPKGLGGVVDVVREKEGQEVPVTVLRTTSVSGEGGSVGTGG--GVRELTLVPKTWSGRGLLGVHLLPP 251
[Close]
BLAST of mRNA_P-littoralis_Contig197.48.3 vs. uniprot
Match: A0A7S3HBQ7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBQ7_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.200e-41
Identity = 95/243 (39.09%), Postives = 138/243 (56.79%), Query Frame = 2 
Query:  137 SREDVLRKDLLMLEAQRDALELEADAIASELKSPGANGEAPVGSKGPLVDSDGFPLAGFDLFNVREKRHRFNCIQTDHKAIMAKMENSLHALHEARAARPAPIPSSSSSTXXXXXXXXXXXXXXXXAVSGTSAFGANSGATLS-LVPIAKVNEVSEGSPAATAGLSVGDLVLRFGGVDISHPRGLGGVVDVVREKEGQEVPVTVLRSGGGGGVEEGARTGVVDLTLVPKTWSGRGLLGVHLLP 862
            SR ++LR  L  L AQRDALE EADAI SEL SPG NGE P G K P VD++G+P    D+ NV++KR R   I TD+KA+M ++E ++  LH      P  +P++S +T                          +S  T++ L P+AK++E+  GSPAATAG+ + DL+++FG V  +    L  +V++V +   Q +P+ VLR+           +  V+L++ P+ W GRGLLG HL P
Sbjct:    9 SRMEILRGTLNNLSAQRDALEAEADAIHSELTSPGINGEPPAGIKTPFVDAEGYPRGDIDIINVKDKRRRLAEINTDYKALMKQIEQTMLQLHNELPPVPTSVPTASENT--------------------------DSNTTVAPLKPMAKLDEIFPGSPAATAGIQLNDLLMQFGTVTSNTNNFLKSIVELVGKNVNQPIPMVVLRN-----------SECVELSITPQPWGGRGLLGCHLSP 214
[Close]
BLAST of mRNA_P-littoralis_Contig197.48.3 vs. uniprot
Match: UPI001455599A (26S proteasome non-ATPase regulatory subunit 9-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455599A)

HSP 1 Score: 135 bits (340), Expect = 1.730e-33
Identity = 89/246 (36.18%), Postives = 133/246 (54.07%), Query Frame = 2 
Query:  134 PSREDVLRKDLLMLEAQRDALELEADAIASELKSPGANGEAPVGSKGPLVDSDGFPLAGFDLFNVREKRHRFNCIQTDHKAIMAKMENSLHALHE---ARAARPAPIPSSSSSTXXXXXXXXXXXXXXXXAVSGTSAFGANSGATLSLVPIAKVNEVSEGSPAATAGLSVGDLVLRFGGVDISHPRGLGGVVDVVREKEGQEVPVTVLRSGGGGGVEEGARTGVVDLTLVPKTWSGRGLLGVHLLP 862
            P+RE V  ++L+   A++D++E E   +   L+S G      VG  GPL+DS+G+P    D+++ R  RHR  C+Q DHKA+M  +ENSLH LH     +  +   +P++ +ST                             A ++L+P A ++ VSEGSPAA AGL VGD ++ FG +  S+ + L  +  VVR  +G+ V V  LR G     +E      V L+L P+TWSGRGLLG +++P
Sbjct:    4 PTREKV--QELI---AEKDSIEREIKELYDVLESQGN-----VGMDGPLIDSEGYPRNDIDVYSARTARHRIICLQNDHKALMVNIENSLHDLHSYERQQREQGESLPTNGAST-----------------------------AAIALIPFASIDLVSEGSPAANAGLLVGDEIIEFGSICTSNFKSLQDIATVVRHSQGRSVRVVTLREG-----KE------VPLSLKPQTWSGRGLLGCNIVP 199
[Close]
BLAST of mRNA_P-littoralis_Contig197.48.3 vs. uniprot
Match: UPI0018D5F789 (26S proteasome non-ATPase regulatory subunit 9-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5F789)

HSP 1 Score: 134 bits (336), Expect = 6.420e-33
Identity = 86/230 (37.39%), Postives = 123/230 (53.48%), Query Frame = 2 
Query:  182 QRDALELEADAIASELKSPGANGEAPVGSKGPLVDSDGFPLAGFDLFNVREKRHRFNCIQTDHKAIMAKMENSLHALH---EARAARPAPIPSSSSSTXXXXXXXXXXXXXXXXAVSGTSAFGANSGATLSLVPIAKVNEVSEGSPAATAGLSVGDLVLRFGGVDISHPRGLGGVVDVVREKEGQEVPVTVLRSGGGGGVEEGARTGVVDLTLVPKTWSGRGLLGVHLLP 862
            ++DA+E E       L+S G      VG  GPL+D +G+P +  DL++VR  RHR  C+Q DHKA+MA +ENSLH LH          A +P++                    AVS  +A          LVP A+++ VSEGSPAA AGL  GD ++ FG VD S+ + +  +  VV+E +G+ + +  LR G G           V ++L P+TWSGRGLLG +++P
Sbjct:   15 EKDAIEQEIKEFHEVLESQGN-----VGMHGPLIDKEGYPRSDIDLYSVRTARHRIICLQNDHKALMANIENSLHDLHAFERQEREHGASLPTNG-------------------AVSAAAA----------LVPFARIDLVSEGSPAAKAGLLEGDEIIEFGYVDTSNFQTMQDIAAVVQESQGKSLRILTLREGKG-----------VPVSLKPQTWSGRGLLGCNMIP 199
[Close]
BLAST of mRNA_P-littoralis_Contig197.48.3 vs. uniprot
Match: A0A8B7Y0R0_ACAPL (26S proteasome non-ATPase regulatory subunit 9 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y0R0_ACAPL)

HSP 1 Score: 130 bits (328), Expect = 8.780e-32
Identity = 84/239 (35.15%), Postives = 131/239 (54.81%), Query Frame = 2 
Query:  155 RKDLLMLEAQRDALELEADAIASELKSPGANGEAPVGSKGPLVDSDGFPLAGFDLFNVREKRHRFNCIQTDHKAIMAKMENSLHALH---EARAARPAPIPSSSSSTXXXXXXXXXXXXXXXXAVSGTSAFGANSGATLSLVPIAKVNEVSEGSPAATAGLSVGDLVLRFGGVDISHPRGLGGVVDVVREKEGQEVPVTVLRSGGGGGVEEGARTGVVDLTLVPKTWSGRGLLGVHLLP 862
            R+ +  L  ++D++E E   +   L+S G      VG  GPL+D +G+P +  D+++VR  RHR  C+Q DHKA+M ++E+SLH LH     +  +   +P++                            GA S A  +LVP A+++ V+EGSPAA AGL VGD ++ FG V+ S+ + +  V  VV++ EG+ + + +LR G G           V L+L P+TWSGRGLLG +++P
Sbjct:    6 RQKVQELMDEKDSIEKEIKELFEVLESQGN-----VGMHGPLIDPEGYPRSDIDVYSVRTARHRIICLQNDHKALMVQIESSLHDLHAFERQQREQGGSLPTN----------------------------GAGSAAA-ALVPFARIDLVTEGSPAANAGLLVGDEIIEFGHVNTSNFKSMQDVAAVVQQNEGKLLTIVMLREGQG-----------VQLSLKPQTWSGRGLLGCNIVP 199
[Close]
BLAST of mRNA_P-littoralis_Contig197.48.3 vs. uniprot
Match: A0A834CI79_ORYME (26S proteasome non-ATPase regulatory subunit 9 n=3 Tax=Oryzias TaxID=8089 RepID=A0A834CI79_ORYME)

HSP 1 Score: 128 bits (322), Expect = 8.160e-31
Identity = 81/247 (32.79%), Postives = 124/247 (50.20%), Query Frame = 2 
Query:  122 EQPTPSREDVLRKDLLMLEAQRDALELEADAIASELKSPGANGEAPVGSKGPLVDSDGFPLAGFDLFNVREKRHRFNCIQTDHKAIMAKMENSLHALHEARAARPAPIPSSSSSTXXXXXXXXXXXXXXXXAVSGTSAFGANSGATLSLVPIAKVNEVSEGSPAATAGLSVGDLVLRFGGVDISHPRGLGGVVDVVREKEGQEVPVTVLRSGGGGGVEEGARTGVVDLTLVPKTWSGRGLLGVHLLP 862
            E+ +P   ++   D+  L  ++D +E +  A    L+  G      VG +GPLVD++G+P A  +L+ +R  RH  +C+Q DHKAIMA++E +LH LH    A+     + +S                                     P A+V+ V+EGSPA+ AGL VGD V+ FG V+  + + L  +  VV+  EG+ + V V+RSG             V +TL P+ WSGRGLLG +++P
Sbjct:    5 EENSPEMSNITIDDVNALIKKKDEIEEQIKAYFDVLEDQG------VGIEGPLVDAEGYPRADVNLYQIRTARHNISCLQNDHKAIMAEIEEALHKLHACEKAKREQDQAETSEEPMEQEVTLPP-------------------------PFARVDTVTEGSPASAAGLRVGDEVIEFGSVNTKNFQNLQNIASVVQHSEGKALRVGVIRSGQ-----------KVQMTLTPQRWSGRGLLGCNIIP 209
[Close]
BLAST of mRNA_P-littoralis_Contig197.48.3 vs. uniprot
Match: A0A2J8ADI3_9CHLO (26S proteasome non-ATPase regulatory subunit 9 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ADI3_9CHLO)

HSP 1 Score: 130 bits (326), Expect = 8.910e-31
Identity = 92/258 (35.66%), Postives = 124/258 (48.06%), Query Frame = 2 
Query:  146 DVLRKDLLMLEAQRDALELEADAIASELKSPGANGEAPVGSKGPLVDSDGFPLAGFDLFNVREKRHRFNCIQTDHKAIMAKMENSLHALHEARAARPAPIPSSSSSTXXXXXXXXXXXXXXXXAVSGTSAFGANSGAT-----LSLVPIAKVNEVSEGSPAATAGLSVGDLVLRFGGVDISHPRG--------------LGGVVDVVREKEGQEVPVTVLRSGGGGGVEEGARTGVVDLTLVPKTWSGRGLLGVHLLP 862
            DVLR+DL  L+ QR   E E  AI+  L +PG  G      KG L+D +GFP A  D+  VR  R+R  C+  DHKA+  ++   L  +H A  A  +P  + +S+T                   G  A    +G++     ++LVP A V+EVS GSPAA AGL VGDL+  FGGV +    G              +  V  V+  +EGQ V  T+LR           +      +L P+ WSGRGLLG HL P
Sbjct:   24 DVLRRDLRELDRQRQGAEQEISAISERLNAPGQPG-----LKGSLLDKEGFPRADIDVHQVRRDRNRLVCLTNDHKAMTDRLARLLAEVHAASRADGSPAGAVASTTSGNASAASQTNSDADGTRPGAVAADGPAGSSGNEAFIALVPFAMVDEVSSGSPAAAAGLQVGDLLCDFGGVAVERAVGAPAAEAASGSSGPLMQRVAAVLAAREGQPVAATLLR-----------QXXXXXASLTPQRWSGRGLLGCHLSP 265
[Close]
BLAST of mRNA_P-littoralis_Contig197.48.3 vs. uniprot
Match: A0A485L6J3_9STRA (Aste57867_16377 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6J3_9STRA)

HSP 1 Score: 126 bits (316), Expect = 7.080e-30
Identity = 84/231 (36.36%), Postives = 119/231 (51.52%), Query Frame = 2 
Query:  173 LEAQRDALELEADAIASELKSPGANGEAPVGSKGPLVDSDGFPLAGFDLFNVREKRHRFNCIQTDHKAIMAKMENSLHALH-EARAARPAPIPSSSSSTXXXXXXXXXXXXXXXXAVSGTSAFGANSGATLSLVPIAKVNEVSEGSPAATAGLSVGDLVLRFGGVDISHPRGLGGVVDVVREKEGQEVPVTVLRSGGGGGVEEGARTGVVDLTLVPKTWSGRGLLGVHLLP 862
            L+ +R A+E E   I  EL S    G +P+G KGPLVDS+GFP A  D++NVR KRHRF C+QTD K  M ++E+ +  ++ E +A +P P P ++                    V G         AT +  P A+V  V +GSP+  AGL VGDL++ FG     + R L  + ++V       + V V R+            G   LTLVP  WSG+G+LG H++P
Sbjct:    7 LDKERAAIEAEMQLIGEELCS----GPSPIGLKGPLVDSEGFPRADIDVYNVRHKRHRFACLQTDLKWKMKEIEDVMAEIYAEKKALQPPPAPRAA--IPKAESPKSQSLEPVDAPVVGPVKLEGKLVATTA--PFARVESVQDGSPSNEAGLLVGDLIIGFGSATAENHRELAAIREIVGRNINTAIDVVVARN-----------EGQYRLTLVPHQWSGQGVLGCHIIP 218
[Close]
BLAST of mRNA_P-littoralis_Contig197.48.3 vs. uniprot
Match: A0A0S6XNW3_BLOB1 (Uncharacterized protein n=1 Tax=Fungal sp. (strain No.11243) TaxID=1603295 RepID=A0A0S6XNW3_BLOB1)

HSP 1 Score: 124 bits (310), Expect = 7.260e-29
Identity = 84/235 (35.74%), Postives = 124/235 (52.77%), Query Frame = 2 
Query:  164 LLMLEAQRDALELEADAIASELKSPGANGEAPVGSKGPLVDSDGFPLAGFDLFNVREKRHRFNCIQTDHKAIMAKMENSLHALHEARAARP-APIPSSSSSTXXXXXXXXXXXXXXXXAVSGTSAFGANSGATLSLVPIAKVNEVSEGSPAATAGLSVGDLVLRFGGVDISHPRGLGGVVDVVREKEGQEVPVTVLRSGGGGGVEEGARTGVVDLTLVPK-TWSGRGLLGVHLLP 862
            L  L +QRD ++ E  A++S L S G + E       PL+D DG+P +  D+  +R  R +   ++ D+K +M K+E  LH  H   A +P AP+  +S +                    G S     +G T    P AKVN ++  SPA TAGL VGD V++FG V+ ++   L  V  VV+  EG+E+ + VLR+G      EG+ +  VD+ LVP+  W GRG+LG HL+P
Sbjct:   28 LFGLMSQRDRVQAELSALSSVLTSHGVDMET------PLLDKDGYPRSDIDVAQIRTTRSKIIHLKNDYKWLMEKIEKGLHEHHANLANQPQAPLNGTSVA----------------GEAQGHSTRPTQNGTTSIEAPFAKVNSIAISSPAETAGLRVGDKVVKFGYVNWTNHEKLSRVAQVVQANEGREIKIRVLRAG------EGSSSETVDVQLVPRHNWGGRGMLGCHLMP 234
[Close]
BLAST of mRNA_P-littoralis_Contig197.48.3 vs. uniprot
Match: A0A4W6GA78_LATCA (26S proteasome non-ATPase regulatory subunit 9 n=5 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4W6GA78_LATCA)

HSP 1 Score: 123 bits (308), Expect = 7.640e-29
Identity = 83/247 (33.60%), Postives = 125/247 (50.61%), Query Frame = 2 
Query:  122 EQPTPSREDVLRKDLLMLEAQRDALELEADAIASELKSPGANGEAPVGSKGPLVDSDGFPLAGFDLFNVREKRHRFNCIQTDHKAIMAKMENSLHALHEARAARPAPIPSSSSSTXXXXXXXXXXXXXXXXAVSGTSAFGANSGATLSLVPIAKVNEVSEGSPAATAGLSVGDLVLRFGGVDISHPRGLGGVVDVVREKEGQEVPVTVLRSGGGGGVEEGARTGVVDLTLVPKTWSGRGLLGVHLLP 862
            E+ +P   ++   D+  L  ++D +E +  A    L+  G      VG +GPLVD++GFP A  +L+ +R  RH  +C+Q DHKAIMA++E +LH LH    A+                           A +   A       TL   P A+V+ V++GSPA+ AGL VGD V  FG V+  + + L  +  VV+  EG+ + VTV+R G             V ++L P+ WSGRGLLG +++P
Sbjct:    5 EENSPGNTEITMDDVKNLIKKKDEIEEQIKAYYDVLEDQG------VGVEGPLVDAEGFPRADVNLYQIRTARHNISCLQNDHKAIMAEIEEALHKLHAREKAK----------------------RERDEAEAQVEAM--EQQVTLP-PPFARVDAVTQGSPASGAGLRVGDEVTEFGSVNPENFQNLQNIAAVVQHSEGKPLRVTVIRDGQS-----------VQMSLTPQRWSGRGLLGCNIVP 209
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig197.48.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LM37_9PHAE3.580e-10670.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3HBQ7_9STRA1.200e-4139.09Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI001455599A1.730e-3336.1826S proteasome non-ATPase regulatory subunit 9-lik... [more]
UPI0018D5F7896.420e-3337.3926S proteasome non-ATPase regulatory subunit 9-lik... [more]
A0A8B7Y0R0_ACAPL8.780e-3235.1526S proteasome non-ATPase regulatory subunit 9 n=1... [more]
A0A834CI79_ORYME8.160e-3132.7926S proteasome non-ATPase regulatory subunit 9 n=3... [more]
A0A2J8ADI3_9CHLO8.910e-3135.6626S proteasome non-ATPase regulatory subunit 9 n=1... [more]
A0A485L6J3_9STRA7.080e-3036.36Aste57867_16377 protein n=1 Tax=Aphanomyces stella... [more]
A0A0S6XNW3_BLOB17.260e-2935.74Uncharacterized protein n=1 Tax=Fungal sp. (strain... [more]
A0A4W6GA78_LATCA7.640e-2933.6026S proteasome non-ATPase regulatory subunit 9 n=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig197contigP-littoralis_Contig197:196402..204143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKY7
Preferred nameNAS2
PFAMsPDZ,PDZ_2
Model size1520
Max annot lvl2759|Eukaryota
KEGG koko:K06693,ko:K07936
KEGG Pathwayko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009987,GO:0016043,GO:0019538,GO:0019941,GO:0022607,GO:0022624,GO:0030163,GO:0032991,GO:0034622,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0065003,GO:0070682,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
Exons4
Evalue9.54e-117
EggNOG OGsCOG0265@1|root,KOG3129@2759|Eukaryota
Description26S Proteasome non-ATPase regulatory subunit
Cds size768
COG categoryO
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko03051,ko04031,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig197.48.3prot_P-littoralis_Contig197.48.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig197 197054..203723 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789945.3078752-UTR-P-littoralis_Contig197:196401..1970531680789945.3078752-UTR-P-littoralis_Contig197:196401..197053Pylaiella littoralis U1_48UTRP-littoralis_Contig197 196402..197053 -
1680789945.3661542-UTR-P-littoralis_Contig197:203723..2037391680789945.3661542-UTR-P-littoralis_Contig197:203723..203739Pylaiella littoralis U1_48UTRP-littoralis_Contig197 203724..203739 -
1680789945.3801818-UTR-P-littoralis_Contig197:204059..2041431680789945.3801818-UTR-P-littoralis_Contig197:204059..204143Pylaiella littoralis U1_48UTRP-littoralis_Contig197 204060..204143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789945.3209057-CDS-P-littoralis_Contig197:197053..1973291680789945.3209057-CDS-P-littoralis_Contig197:197053..197329Pylaiella littoralis U1_48CDSP-littoralis_Contig197 197054..197329 -
1680789945.335252-CDS-P-littoralis_Contig197:198724..1989711680789945.335252-CDS-P-littoralis_Contig197:198724..198971Pylaiella littoralis U1_48CDSP-littoralis_Contig197 198725..198971 -
1680789945.3531544-CDS-P-littoralis_Contig197:203478..2037231680789945.3531544-CDS-P-littoralis_Contig197:203478..203723Pylaiella littoralis U1_48CDSP-littoralis_Contig197 203479..203723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig197.48.3

>prot_P-littoralis_Contig197.48.3 ID=prot_P-littoralis_Contig197.48.3|Name=mRNA_P-littoralis_Contig197.48.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=256bp
MSSFTQQEQPTPSREDVLRKDLLMLEAQRDALELEADAIASELKSPGANG
EAPVGSKGPLVDSDGFPLAGFDLFNVREKRHRFNCIQTDHKAIMAKMENS
LHALHEARAARPAPIPSSSSSTPTATPSRSTAPPSSTPAVSGTSAFGANS
GATLSLVPIAKVNEVSEGSPAATAGLSVGDLVLRFGGVDISHPRGLGGVV
DVVREKEGQEVPVTVLRSGGGGGVEEGARTGVVDLTLVPKTWSGRGLLGV
HLLPP*
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mRNA from alignment at P-littoralis_Contig197:196402..204143-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig197.48.3 ID=mRNA_P-littoralis_Contig197.48.3|Name=mRNA_P-littoralis_Contig197.48.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=7742bp|location=Sequence derived from alignment at P-littoralis_Contig197:196402..204143- (Pylaiella littoralis U1_48)
TAATAGAGGAGGAACATAAGGAAAGCACTGACGGATCGGTCCAGGTTTAT
TTCTAGAAGCTTTTTGCTGAGAAAAGCAGTGAAGGTATGAAACCGTCTGT
ACCCGGAGCTGCCACATCTCTCGCGATCATCTATCCCCTTTCCTCTTTCC
TCTCTTCTCCCTCAAATCTCGAATCTCGATTCCAGCATCATTACGAATTT
CGAGTAGTGAAAGGACGAAGAAGTTCCTTGAATGACGACTGGTGACTGCC
AGCGTCGGATAACACGCCGTGTTTTTTTCAGAGAGACGTTTACTGCCTGC
TATATCTTTTACAGGTCGAATCATCTACAGGCTACCGCTTCACATATGTC
TACAGCATAACAAAATGTGAGTAGTTCAAATCTCTCTCGCTGCTTTTCCC
ACAGCAGGCACTGCTGTCTGATGTCCAGCTTTACCCAGCAAGAGCAGCCC
ACTCCCTCTCGAGAAGATGTTTTGAGGAAGGACCTTCTCATGCTTGAGGC
GCAAAGGGACGCTCTCGAGCTGGAAGCTGACGCTATCGCCAGCGAACTCA
AGTCACCAGGTGCGAACGGAGAAGCCCCGGTGGGGTCGAAGGGCCCGCTT
GTCGATTCGGACGGCTTCCCGCTGGCAGGATTCGATCTTTTCAACGTACG
AGAAAAAAGACACCGGTGAGAGCGTTAGAGACAACAGATCCACGAGACAG
AGAGAATCAGACACCAATAGCATCACATCATTAGTCTGTAGCAGTGACGC
CAGCAGCAGCAGTGCGCGATCGAGGCAGTCCCCTCGTGTGTGACTGGAGG
GCAACAGGGTTGTTTTTGGACCTCCTTTTACGGGTCCCATTCTCCAGCAG
CACCACTGCTGTACCGCTTCAAGGACTAAACCCGGCTCACATCCCGGACC
GATGCTCAGACAAGCTCACATCTCCCGCACAGCTGAAGAAGACTGACCGT
CCCGAATGGACGTGGGATTGGAAATACATTGAAGAAAGAAGTGAAAGAAA
TACTCCGTACCAGCTTTCCGAAAGCGAAGGATGACAGCACTCAAAAAATA
ATGTCACCGCCGATCACACGCCAGTACTTGAAGTGTACGAAGCATGATTG
TATGATACAACAAACGTGAACAGGCAGACCTCGTGGCAAGACATGTTTGC
GATTGCATGCTCATTTTATTTTGATCACCCCCCCCTCCCCCCCCCCGACT
TCCGGTACTTCCGGTCTTCCCTCTGCACTCTCCATCTATAGTACTCCGGG
GTATGTATTTTTATTTTATTCCTCTTTTGTCTCTTTTTTTTTCTTTTCCC
TTTTCGTTCCCCTGCTTCCTCTTTGTTTGGCGGCCTGTTTGTTGTTGTTG
TTGTTGTTGATTCTCACAATAGCTCACTACCGCCGCAGTCTAGCCCGTGG
TCACAAACCAGGCACATATCGTGCTAGGAGGAAAAAAATAAAAAAATAAA
ATATATGGACTATAATCACCCACAGTCAGATCAGACGTGGTACCGTTGGG
GTACCATCTGTGGTGGCCAGGATACCAAACAAATACAGAAAAAATAATAA
CAGGCTCGAAAGAAAAACAAAAATTGGAAACAGTCCGACAAACAAAAAAT
AACCAAGACAAACCTCAACCATAACCATATACTTCGAAGTGCTTCGTGCA
TCGAACCAGGGCCCAGGGCCATGACAGACCAAGGCAAAGGCAAACCAGGG
CGATGGCCCAGTAACTATATGATCAACAGACGAAAGACAAAAAATAAAGT
AAAAAAGAAGAAGATACAGGGAGGGCACAAAGACTGAGGGAGTGCATTCG
TAGACAAACATAACAAACAGGCCGCCGCCAAACAAAGAGGAAGCAGGGGA
ACTGTTTGTTGTGTTTGTGTACGAGTGCACTCCCTCAGTCTTTATGCCTT
CCCTGTACATCTTCTTCTTTATTTTTTGTCTTCCGTCTATTGATCATATA
GTTACTGGACCATCGCCCTGGTTTGCCTTTGCCTTGGTCTGTCATGGCCC
TGGGCCCTGGTTCGATGTACGAAGTACTGTACTTCGAAGTGTGTGTTGTC
ATCCCATATTCTCTGGCACACTAGTCTGCACCCTGCGGTTCAAACTACAG
GCTAGGCCCATCGACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAG
TTACCCCCACCTTCCTTCTGCGGTACATGCGTGAGATTTTTTCTCGCGAG
CAGGGATCCGCGGTCCCTACCCTCGTCGGCGAAGCCGAATCTGCTTTTAC
TAACAGCATAGCCGCTTTTCAAAGTAGCAAACTTCGAAGTATATGGTTAT
GGTTAAGGTTTGTCTTTTTTTTTTTTGTCGTACTGTTTCCAATTTTTGTT
TTTTCTCTCGAGCCTGTTATTTTTTTTCTGTATTTTGTTCGGTACTTAAA
AAAAAAGAAACTCCTGTGTTGACTTCCCCCTGTGTGACCCCAGTTGGAGC
GTCTACCTACCCGAAAGGTGGAGAGTGGCGTCCTATTAAAGGGATGATAA
CACGCCACTTTGGCCACCACAGATGGTACCCCAACGGTACCCTATCTGAT
TTGACTGTGGGTGATCATAATCCATTTATTATTTTTATTTTTTTCCTCCT
AGCACGATATGTGCCTGGTTTGTGACCACGGGCTAGACTGCGGCGGTAGT
GAGCTCATGTGAGAATCAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACATACAGGGTAAATTCCAATT
CATTTTCTCAAGAGTTCTGCACTTTTTTCTGTCCTTGCTGAGAACCTCTC
TAGGATACCGCTGCCCGACACTACACTACATCAGCCTTTGGTGGGGTGCA
ATTTATGATCATAAACAGCAGCACCGCAGTAGTCCCCCGAACCCTCAAGG
CCACACTGTTTTCAGTACAATAAAAAATCGGGTTTGTAAAGAAATGGCAG
GTGGTGGCATTTTGCAACCGGGAACCAAATGACTTGAATACAGTGCAAGG
GATTTGCACAAAAGTAGCTTTATTTGGAGGGAGTCCCAAAACTACTTTAA
AAACGTATTTTTGGTAGCTTTTCGGGCTGAAGATTGAAAAACAAAACTCC
GCCCAATTCCGAAGCTCTACAGGTTATTGGCTTTTCAGATTGCCCGGTAA
GACAGCCACATTCGCGTCTAATTTCCATGTTGATCGAGGCTATACCTGCG
GAGAACGGTGGCATCGCGCAAACGCACCCGCAGATCTCCCATCTTGGTGC
AATTATGGACTGCTGCAGGCCTCCAGAAGTACTTCACACGAGTACCTCTA
GAATAGTTTCTGGCTGCGCGCTGCTGTAAACGCATGAGACGCCACTCACA
CACCACATCAGTAGGCTCTGGCAATTCGAAGCAGTGAGGTTGCTTGTGAC
GAGCGGGCTATGTCCGTGACTGAAGCACAGTTTCTGCGGTGTTTTTCGCC
AATACCCGTTCGGCGAAATGGTGCTCAAAACGATCATGCCGGGCACCTCG
ATCTCGAGCTACAAGGCATATTCGGGGGTCGGGCACAGTCTTAATCCACA
CAGGAGTTCAAGCTGATGTGAGATCTCAAAAAACCTTTAGAGGTTTGTGC
CTCCTAAGGCTGAATGGGGTACTAGAGTATTGCCCGTCTAAAAATTACCC
GGGTACCCGAGTCGAGTACCCGGGTCCCGCACTACCCGACCGGGTCCGGG
TAGAAATTTTGGACCCACGGGTAATTCGGAAACGGGTACCCGGGTGTGCT
GGTACCCCTATTCTGATACACGGCGCCCCCAAAAAGCAGAGAGCACACAG
CACGTTTGAGTGGTGCAACGACGACGAAGTTGGAGGAGAGGAAGTACTTG
TTGTGGATGGAGAGTGGTTACCCATGGTGGTTTTCAACAGCACTGCGTAG
GTTTTTTGACAGCGGGAAAGCAGCGGTAACAGGGTGGGCATATGGGCATA
TTTTGTTTCGCGTGGCCCGCTGCAGCGTTTTTTTGTGCCGATGTCGTAAT
TTTGTTCTTCAAGCTTGTGCTTGGCTTTCCGTTTACCCTCAGGGGAGCTC
CAACGTACATGGTCTGATCACTTATAGAAACATTGGTTGACGTACCTTAT
TATTTGTGTTCGTTTCAATATCTACTCCAGACCCACGCCTGGAGAGAGGC
GAACACATTGTACACATTGATGTGTTTTTTGTTTTTCTTACAAAAACATC
AGTGTGTTCGCCTCTCCAGAGAGAGGATCCGTGTGTTCGCAAGTTTAAAA
AAAAAAATGCCCCGAACCAATGATATTCAATTAGAAATGATGGCATTGAT
ACAGCACGTGATCATGTACGTGACATGAGATCATGACATGATGAGATGAT
AGCATTACGTGTAGTCTGTATCAAAAGTCACCTTGTCTCTGTGACCCCGG
CTGGTGCATCCACTTCGTACCGAAAAGTGAAGACTGGTGCCCAGAATGTA
TGGGACTACAGATTACAGCATACACGCACACACACACTCGTAAAGGGCCG
AAAGACGAATCCGACTCATGCCCTGTGGCACTTTCCACCTTGGCGCGCCG
CTGAATTAGTCGACGGGCTGGTAATGGTGTATGTCTACTCGGGCACCCGG
GTACCCGGTTACCCGGGTACCCGAGTTAATCATTTCCCGGGTATCCGCGG
GTAATAATTTTCGAGGCCCAACGGGTACCCGGGTAAAAAAAAAAGTGACG
GGGCAATACTCTAGAACGTACAGCAGTCAGTGGGGGCACACAACTGCTGT
GTTTTATCTGGAAGTTTGACCCATTTGGGAAAGGAATTTTTTTTTCTTCG
AAATACCGTGTTCAAAAAATACAAACACGGGTCCCCTGGAGGGGGAGTAC
AGGGTGGCCTTAAGTCCGCATGATATCAAGGCTGAATCATACGGACAAAT
CAACTCACTGCTGTTTCACCTCTCCCCTCGAGAGCCTAACGTGGCTTTTT
TTACCGCTGAACGGGGTGATACTAATATAATTCCTCCATATGATACGATA
CCACATCATGCCGTGATTTCACACCATTCGGACATCTGTGTCTCCCCCAG
CAAGAAGTCAGTAGGTTCACTCGTTGCCCGTTTCAAACAAACGAATGACG
ATTCGGACATCTCTGTCGACCCCACTCCTTACCCCATGTCCTCGTGTTTT
ACGTACTCTTTCGTCTGCCAAGGTTCAACTGCATTCAGACGGACCATAAG
GCCATCATGGCCAAGATGGAGAATTCCCTGCATGCATTACATGAGGCGAG
GGCGGCGAGACCAGCACCAATACCGTCGTCATCGTCGTCGACGCCAACAG
CAACACCATCTAGATCTACCGCCCCACCTTCATCGACTCCCGCCGTCTCT
GGCACCTCAGCTTTTGGTGCAAATTCCGGGGCAACGTTGTCCCTGGTGCC
CATCGCGAAGGTCAATGAGGTACGTGAATGACGAGGATGAAGGGACAACA
AGACAGGCGAAGAGTGGCTTTCCATCATCGGAGAGATAGCAATACTGCGT
TTTTTTTGCAAACATCACCGCACGGCCCTGTCGCACGTATGATACGTATT
TCACACTTGCTGTGCCTCGAAATCAACTCTGGCCCGTAGCTGTAAAATGA
CGCAGCTATGCGCTGCATGCATGCCCTACAAGAAAAACAAAAATAGCGCG
ACACACGTGGAGAACATCCTGTCAGGTTCGATGGACGGCAAGTAGACACT
CTCCCAAACGTCAACCTGGCGCCAAGAACGACTCCATTAACAGCGGCAAG
GGGGCATTGCAGACGCAACCAACAGCAGTAGCATTACAGACAGCAGCATT
GCCGCCGTTGGTGAAAACCTTCAGTTCCAGAATTCACAGTCTTGTCGATG
ATACCGCACCGGTTCGTAGCAATACTCGCGGAGGCGTCTTCTCTGTCTCC
TCTTCGCCTTGACAAGTAAGTTGTAGTATGGTGAGTGAAACTGCGCTCTA
CCGCCGTTTCATGTCGTATGCGATGCTCCGAAACCCCCACCGCAGCAGGT
GAGAGATCGGGTCAGAGCCCGGGGACTACAAATCACCTTGCGCAACAACA
CGCTTCTGCATAACCCTAGCACACACCTTGCACGTACTGGTGCTCGACTC
AAAAAAATCAACGAGGGAAATGGATAGCCGAACACTGCCTTCTCGCGATA
AAGTTTAAGGCGGGCAATGCAGAAGGAACGTGGAGAACAAAGAAATTCCT
GTGTTGACCTTCCCCCTGTGTGACCCCGCTAGGCGCGCCCAACCTATACC
GAACGGTCAAGACTGCCGTCCAGAGTAGATAAAGATGACAACATGCACAA
GCTTAATCATCACAGATACACGGAAGTATCACAGGCGGGATGCATCGGTA
CAACAACAGCGCCTGCGTGGATCTTCCGTCTCGAAGCACCAGACAAAAAG
AGCCCGATCCTTCTTGAAGACAACAAAGCAGGTGGTCTCGACTGTGGCTG
ACGTCACTCACCGGTTGGGGTAAAAGAGTCCAATTTGAAATCAGTGGCGC
CCATATCGACCAATAGGAAACTGCGGGCACCCAACGTCTTTCTAAGCTTG
AGGATGGGAGAAGGACGGTGTGCAGTTGTGTTGTCTGGAAAGAAACGGAT
CGATTTAAGTTTCGCCCCAGGGCATGTTTTGCCAATCAGGACTCTGCTTG
CCGCTTTGTCGCTTTCTCTCCTTGAACCTCAAGATATACTCGAGCGGTGT
AAAACTTGTTGACGCAGTACCTCATCTCACACCCAGTACCCCTGGAATGC
TGGCGAAAAATCACGCTTAGTCCGTGCGCCGTGAAAAATATTTGGTGTCT
GCTATCGTACACAGGTATCGGAGGGTTCCCCTGCCGCTACCGCAGGATTG
TCGGTCGGAGATCTTGTCCTGAGATTCGGAGGCGTCGACATTTCGCACCC
CAGGGGCCTTGGAGGGGTTGTTGACGTTGTTCGGGAGAAGGAGGGACAGG
AGGTACCTGTGACGGTGCTCAGAAGTGGGGGGGGTGGGGGGGTGGAGGAA
GGGGCGAGGACCGGGGTGGTGGATTTGACGCTGGTGCCCAAGACGTGGAG
TGGGAGAGGTCTCCTTGGGGTGCACTTGCTTCCTCCTTGAATTGGGAGGG
TCCACCATTGATCAAGAACAGAGTTACCCGGGGTAAATAAGGTTTGCGAC
CGTGGGCTATCATGACTGTTGATGGGTTAATGCGAGCACCGAGCCAACAG
CATCTCAAGGGTGTCAAGAGCGTGGTGACGTCGTAAGATTTCTCGGAAAC
AAGAGTTCAACAAATCCGTCGCAGAACGGTCTGCCACTGATGTTGCTCGC
AGCCCTGGAGGAACTCTTTGTGCAGTGTGTGGGGGAGAAGAGTATTGGCG
CACCACCCCAAAAAAGAAATGTTGGGGACAACGCGTGTAGTCTTTACTCG
TAGTAACACGCTCGTTCAGAGTGCCCGGTCCGAGGTCAGTCGAGTATGTC
GAAAGGCTCCCATTTCCGCAGCTACTCCGGGTCCTTCCTGCCTTGATTTT
TAAGGCAACGTCATGATTGGTCAGGTCCTCGCCCCCCCCCTTTTACTCGC
CAACGTCCGTCGAATTTCACGCAAAAAGTAGACGCGTCGCTTGCGGGTCG
TTGCCGTCGGAAATGGCAAGAAAATCATCGTCGATACTGGTACAGTGTCA
GGTTTCCAACCCAAGAGCAGACCGCACACTCTTACAGTAGATTGTGGGGG
TTTATATAAAACACCACAGAGAGAAAGAGAAAAGGTCCCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig197:196402..204143-

>mRNA_P-littoralis_Contig197.48.3 ID=mRNA_P-littoralis_Contig197.48.3|Name=mRNA_P-littoralis_Contig197.48.3|organism=Pylaiella littoralis U1_48|type=CDS|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig197:196402..204143- (Pylaiella littoralis U1_48)
ATGTCCAGCTTTACCCAGCAAGAGCAGCCCACTCCCTCTCGAGAAGATGT
TTTGAGGAAGGACCTTCTCATGCTTGAGGCGCAAAGGGACGCTCTCGAGC
TGGAAGCTGACGCTATCGCCAGCGAACTCAAGTCACCAGGTGCGAACGGA
GAAGCCCCGGTGGGGTCGAAGGGCCCGCTTGTCGATTCGGACGGCTTCCC
GCTGGCAGGATTCGATCTTTTCAACGTACGAGAAAAAAGACACCGGTTCA
ACTGCATTCAGACGGACCATAAGGCCATCATGGCCAAGATGGAGAATTCC
CTGCATGCATTACATGAGGCGAGGGCGGCGAGACCAGCACCAATACCGTC
GTCATCGTCGTCGACGCCAACAGCAACACCATCTAGATCTACCGCCCCAC
CTTCATCGACTCCCGCCGTCTCTGGCACCTCAGCTTTTGGTGCAAATTCC
GGGGCAACGTTGTCCCTGGTGCCCATCGCGAAGGTCAATGAGGTATCGGA
GGGTTCCCCTGCCGCTACCGCAGGATTGTCGGTCGGAGATCTTGTCCTGA
GATTCGGAGGCGTCGACATTTCGCACCCCAGGGGCCTTGGAGGGGTTGTT
GACGTTGTTCGGGAGAAGGAGGGACAGGAGGTACCTGTGACGGTGCTCAG
AAGTGGGGGGGGTGGGGGGGTGGAGGAAGGGGCGAGGACCGGGGTGGTGG
ATTTGACGCTGGTGCCCAAGACGTGGAGTGGGAGAGGTCTCCTTGGGGTG
CACTTGCTTCCTCCTTGA
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