mRNA_P-littoralis_Contig197.39.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig197.39.3
Unique NamemRNA_P-littoralis_Contig197.39.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig197.39.3 vs. uniprot
Match: D8LKY5_ECTSI (PRA1 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY5_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 5.920e-97
Identity = 180/247 (72.87%), Postives = 192/247 (77.73%), Query Frame = 3 
Query:  282 MADGKELKDELAVLGQHMQRFFVADRRPWAEFFGPMEQPTWTQAEVKKRMSANFSFFTTNYLMICATCSAVYILRSPGLLLTLLVSLCMFLYVFMSRRKTVVILDVTLDTRAKTIVAAAASLLLLSVTGYIFALQFSGILGCAVCLLHATFRPPVARAVRNQRGGGGGAPELHGGDGDLEGGGATIGRGRPGPVNANMRLRTRPVPGGPMGGMSTTPXXXXXAGAGFRDSAPPMVDPGSAGRHSHLT 1022
            MA+  ELKDEL VLGQHM RFFVADRRPWAEFFGP+EQP WTQAEVKKR++AN SFF TNYLMI AT +AVYILRSPGLLLTLL SLCMFLYVFMSRRK +V+LDVTL TR KTI AA AS+LLLSVTGYIF+LQFSGILGCAVCLLHATFRPPVARAVRN RGGG   PELHGGDGDLEGG                             GM+TT XXXXX    FR+SAPPMVDP +AGRHSH T
Sbjct:    1 MAEASELKDELTVLGQHMHRFFVADRRPWAEFFGPVEQPKWTQAEVKKRVNANLSFFATNYLMIWATIAAVYILRSPGLLLTLLASLCMFLYVFMSRRKKLVVLDVTLGTREKTIAAAVASMLLLSVTGYIFSLQFSGILGCAVCLLHATFRPPVARAVRNTRGGG--PPELHGGDGDLEGGXXXXXX----XXXXXXXXXXXXXXXXXGAGMATTXXXXXXXX--FRESAPPMVDPSNAGRHSHAT 239
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig197.39.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKY5_ECTSI5.920e-9772.87PRA1 family protein n=1 Tax=Ectocarpus siliculosus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig197contigP-littoralis_Contig197:178284..183776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog130081.XP_005703148.1
PFAMsPRA1
Model size2498
Max annot lvl2759|Eukaryota
KEGG rclassRC02078
KEGG koko:K12638,ko:K19496,ko:K20359
KEGG TC1.A.17.1.1,1.A.17.1.22,9.A.49.1
KEGG ReactionR07431,R07448,R07786,R07787,R07791,R07792
KEGG Pathwayko00905,ko01100,ko01110,map00905,map01100,map01110
KEGG ModuleM00371
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016032,GO:0016192,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0040011,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044000,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044766,GO:0046739,GO:0046794,GO:0051179,GO:0051234,GO:0051701,GO:0051704,GO:0051814,GO:0052126,GO:0052192,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1902579
Exons4
Evalue1.89e-08
EggNOG OGsKOG3142@1|root,KOG3142@2759|Eukaryota
Ec32 ortholog descriptionPrenylated rab acceptor PRA1
Ec32 orthologEc-11_006030.1
EC1.14.13.112
Descriptionvesicle-mediated transport
Cds size744
COG categoryU
BRITEko00000,ko00001,ko00002,ko00199,ko01000,ko02000,ko04040,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig197.39.3prot_P-littoralis_Contig197.39.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig197 179757..183495 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789945.067506-UTR-P-littoralis_Contig197:178283..1797561680789945.067506-UTR-P-littoralis_Contig197:178283..179756Pylaiella littoralis U1_48UTRP-littoralis_Contig197 178284..179756 -
1680789945.1186318-UTR-P-littoralis_Contig197:183495..1837761680789945.1186318-UTR-P-littoralis_Contig197:183495..183776Pylaiella littoralis U1_48UTRP-littoralis_Contig197 183496..183776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789945.0784874-CDS-P-littoralis_Contig197:179756..1801421680789945.0784874-CDS-P-littoralis_Contig197:179756..180142Pylaiella littoralis U1_48CDSP-littoralis_Contig197 179757..180142 -
1680789945.0870857-CDS-P-littoralis_Contig197:181542..1817561680789945.0870857-CDS-P-littoralis_Contig197:181542..181756Pylaiella littoralis U1_48CDSP-littoralis_Contig197 181543..181756 -
1680789945.0961814-CDS-P-littoralis_Contig197:182143..1821941680789945.0961814-CDS-P-littoralis_Contig197:182143..182194Pylaiella littoralis U1_48CDSP-littoralis_Contig197 182144..182194 -
1680789945.1084292-CDS-P-littoralis_Contig197:183402..1834951680789945.1084292-CDS-P-littoralis_Contig197:183402..183495Pylaiella littoralis U1_48CDSP-littoralis_Contig197 183403..183495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig197.39.3

>prot_P-littoralis_Contig197.39.3 ID=prot_P-littoralis_Contig197.39.3|Name=mRNA_P-littoralis_Contig197.39.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=248bp
MADGKELKDELAVLGQHMQRFFVADRRPWAEFFGPMEQPTWTQAEVKKRM
SANFSFFTTNYLMICATCSAVYILRSPGLLLTLLVSLCMFLYVFMSRRKT
VVILDVTLDTRAKTIVAAAASLLLLSVTGYIFALQFSGILGCAVCLLHAT
FRPPVARAVRNQRGGGGGAPELHGGDGDLEGGGATIGRGRPGPVNANMRL
RTRPVPGGPMGGMSTTPPPGGGAGAGFRDSAPPMVDPGSAGRHSHLT*
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mRNA from alignment at P-littoralis_Contig197:178284..183776-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig197.39.3 ID=mRNA_P-littoralis_Contig197.39.3|Name=mRNA_P-littoralis_Contig197.39.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5493bp|location=Sequence derived from alignment at P-littoralis_Contig197:178284..183776- (Pylaiella littoralis U1_48)
GGCACACCGGCACACCTAGCGTTCGTTGTTACCACCATCTCCCACCGACA
TCGCTCGCTCATCAAGCTTCCTGCAGCCAAGTCGAGGGGAGAACTTAGGG
ACAGGGAAGAGCTTTGGAGCGATTGAAATTTGGGAGTTATCGTCTTGTTT
CTTTGTTGGTGTCGCGCCAAAGAGCATCAACAAGATTCAATCGGCGGTGC
CTCGCTCTTCTGGCTTGTTTTCTCCTCACCTGTGGTTGAGCTCCCCACAT
CCAAGCAGCCGTGGTGACGCTAGGCAGCCGGATGGCGGACGGGAAGGAGC
TGAAGGATGAACTCGCCGTGCTTGGCCAGCATATGCAGAGGTTTTTCGTG
GCTGATCGGCGACCATGGGCAGAAGTGAGGGTTCAGTTTGCAGTTTACAG
TTTGTCCGCGGCTGGGTGTTGTGTTTGGTGTTGTCTGTGCTGCAGACACA
CGGGTGAGAAGAGCGCGGGAGCTATGATACCCCTTTTCTTGTCTGCTGTT
ATGCTACGGCTTGGTGACATCCATACCTACCATATTGAATTCCCGCGTTT
TGGTATGAATTTCATAATGCCATGCCTGCCTCGTAATATCGCCACAATGC
ACCAGGTAGAAGGCAGGTACCATCTGTAGAGAACGGCAGCAGTACAGCAG
TAGTACTTTATTTTTACGCCTTGTCCATCTTGAAAAAAAATACGGTTTCC
CACACGTCACCACTCAGTGGCCCCGAACAGACCGCGGCGGAATATTGAAC
ATTTAGAGTAGCGGTTGTCGTAGTTCATAGTCGCAGCTCGTATACTCATT
TTCCACCGCCTCCACGGGTGCATCAACCATGAGACCATGAGGGACGAGCC
ATGGGTACTCGGTCAAACCCACCCAAAACAATGATTTTACAACACCTACC
TTGAACCAACACGACACTGATCTACGACGTAGCTTTACACTACTTTATAA
GTACAGGTTCCACGCTTGTAGATACAGCAGTGACTGCTGTGTACTTCGCA
TCATTTTACCATGACATTCAAGATGTGCCAACAACAGCATCATACACGTG
TACCGGTATATCGAGACCATGAATACTCACCACAGGACAGAGGACGTATC
GTTTGTCACGCAAGACGACCTTCAATTGCCTTCCCGAGCCTGTATCCGTA
GGGGAGCTGCAACGGTAGTTTATCTGATGTGGTAAAGGAAAACAAGTCGA
TGTGTCCGTTGCTTGCTCACTCCGGATCCTTGTCCAGAGGGAGACGGATA
AATGCACTGATGTAAAAAAAACGAGCGGGTCGGAATGGAAAACAGCAAAG
CATCCTCACTTTGTTTCCGGAGATACTGTACCCTTCCGCTCATCACATTC
ACCCTCATACACGACACACACCAAACATCAGCTCGTCCGCTGCATAACAT
GTACCTGGTAGACCGTTTTGTCTGCCCGTCGCCCATCACATGCTCCACAG
CAGTGCCGGCATGGATGGACATAAACACGCTATCCTGTGCTGATTTCTCT
GATGGTATCTAGAGTCTCTTTCCTCCCGCCGTTCTCATCGACTGACACAC
ACACACACACACTTTTGATGCTCGACGAGCAGTTCTTTGGGCCTATGGAG
CAACCCACATGGACGCAGGCGGAGGTCAAGAAGGTGAGAGTGGAGAGAAC
GGCCTTTGTCAACCTTTACTAGTGGAGATTGCCGCCGGGTCACCGGGTCT
CTGGCTGTGCGGTGAACGACGAAGTATGGCCCCCGCGAGACCCCTCTAAA
TTGTGCAATCGCGGGGCAGACGACATTTTGCCTGTTGCACGAAGTGCAAG
TTTGATTGCACAACGACCTGGTTTTTTTTTAGGGTGGCGAAAACGTCGAT
CTAGTGGAAACGCCCCATGACCACAGACAGGTGTTGTGTGTTGACCATAT
CGTATCATACACCGTATGGATACATCACCGCCCTCGCTGACGTGCGCCGC
TGGCTGTTGCGTGTTTGAGACGACAACCTCCTCGTATTTTCTCCCGCTAC
GTGACTTGCCGTGACGACAGAGAATGAGCGCCAACTTTTCCTTCTTCACG
ACGAACTACCTCATGATCTGCGCCACTTGCTCGGCGGTGTACATCTTGCG
ATCGCCAGGGCTGTTGCTGACCCTGCTGGTGTCGCTGTGCATGTTCTTGT
ACGTGTTCATGAGTCGCCGCAAGACGGTCGTGATACTGGATGTGACGCTA
GATACGAGGGCGAAAACTATTGTGGCTGCTGCAGGTGTGTGTGTCGTTGT
TGTTGTTCATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGT
TACAAACAAGGCGCATATCGTGCTAGGAGGGAAAAAGAAAAAAGAAAATA
AATGGACTATGATCACCCACAGTCAAATCAGATATGGTACCGTTGGGGTA
CCATCTGTGATGCCCAAAGTACCAACCAAAATACAGAAAAAAAATAACAG
GTTCGGAAGAAAAAACAAAAATTGGAAACAGTACGACAAAAAAAAAAAAG
TAAAAACCTCAGCCATAACCATATACTTCGAAGTACTTCGTACATCGAAC
CAGGGCCCAGGGCCATGACAGACCAAGGCAAAGGCAAACCAGGGCGATGG
TCCAGTAACTATATGATCAAAGGACGAAAGACAAAAAAATAAAAAAGAAG
AAGATACAGGGAGAGCACAAAGACTGAGGGAGTGCCCTCGTTCACAAACA
CAACAAAGTGTGCGTGTGTGCGCGCGCTCATGTGTGTGACTTAACTTTGC
GCACGGCGTCCTCAGCGTTGTTGATACTGAAAACGAGACCTCAAACTTAG
TGTCTATTTGCGAAATGCTCTGTAGATTGCCGCCTCACGATCGCTGGCTG
CCGGAGCGTTTTGAATGCCGTGGTTGTGAGGAGAATGTCTCAGGGTGCCC
AAAGGGGGCATGTCCCAAACAAGATAAGTTACCGTACACCTAGAGGGAGG
AGATGCCTCCACGCGCGAAGCGCTCGTGCACGACGCCACTGTTTTGGTCG
CACCCCTCTTCAACATGCCATTATTTGGCACACGTTCGGCTTTACTCGCC
CATGTTTAATACTTCGTGTTTGTTTGATATTTTGTTGCAACATGTTCGAC
GACGGGAGAATGACAGAATGCTACCGAACTTGCCTGCTGCTGTTCCTCCT
TTGATCGCGCAATGTATTTTAACTGTTGTAGAGCGCCATCTGCTTCATGC
ACGATGGATTCATTGCACTTGGAAAAAACACATGGAGCTACGTAACATTA
TTCACTCGTCTTTTGACCTTGACAGGCCTTCCGTTTGGTCTGTATCTGAG
TCTCGCTCCTCTTTCGACCACCCCATGGTTGACTGTCGCGCCGTGTGCTC
TAGCGTCCATGCACTGCCTTTGACCGTGGCAGTTATGCGTATTGTGTCAT
GTTTGCACCAGTGTCTCCTGCCTTGCCTGGTGCGATATCCCTGAAACAGC
AACATGTCCGTCCACTCTCCGGCTACAAATACAAGATGATAAATTCTTCA
GCAGTTCCCACCATTTCTGAGTCAGAAACTGAAGTTCTGCTCCTTTCTCA
AAACGTCGCCGCCGTGTTTGTCCGTTCGTTGGCCGTACCGTGCCGTTGAC
CTTTTGCCAATCTCTTTTCCCACCGGCCGATCAGCGTCCCTGCTCCTCCT
CTCGGTAACGGGCTACATCTTCGCGCTGCAGTTCTCGGGCATTCTCGGGT
GCGCTGTGTGCCTCTTGCACGCCACCTTCCGCCCGCCGGTTGCACGAGCC
GTCCGCAATCAACGGGGCGGTGGTGGCGGCGCGCCAGAGCTCCACGGGGG
AGACGGCGATCTGGAGGGCGGGGGGGCAACCATCGGGCGGGGGCGGCCGG
GGCCTGTGAATGCGAACATGCGTCTTCGAACGAGGCCTGTCCCGGGGGGG
CCGATGGGGGGTATGTCCACGACCCCGCCCCCGGGCGGCGGGGCGGGAGC
GGGGTTCCGCGATAGTGCACCGCCGATGGTGGACCCGGGCAGCGCGGGCA
GGCACTCCCACTTGACCTGACCTGATCCGGGAACGAAAATAATTTAAACG
AGGGCGTGGTGTACATGAAGAAGCAGCGTCGATATGCACGAGGATTGGAA
TGGATATCATACACTGAACTGAGAAGTACCGGTAGTGTTGTGTTTGCGGC
ATGCTGAGAGTGGGCGGTCATCAGAGTCGCACCGCAGCAGCCGAAGTTGC
AGTCGGCCTTCGATTCTGGCCTGAGAAACGAGAATGGAGACGCGCTTTTG
GGGGGTCGAATTGGTGAAGAATTCTGAACGGCGGCTACGTTGTTCGCGAG
GGCTGAGCAGGAGAATACAGCAACGCGCAACTGGAAAAAGGAGGCCGCTC
CCTATGATACTCACTCACATTTTGGTATCGCGAATGATGACTGAGGAAGG
ATCTGAAGTTGCCATGCCGCGGCGAGAAAGATATTGGGGGCTGGGCAGGT
GCGCGATACTGTGCCGGGCGTGTGATCATTCTCCGCAGGTTTGCCGTCGT
TGTTACGACTTTTCGGGAGACACTGCTCGGGAGTCGTGTACGAACATGTG
CATCGCTGATTTTCTTTGGTGAGGGAGAGATGAACGTTTCACCGCTTAAT
CCCCTATCGATACTGTAGCGCGTGACCTCCAGGTTTTGTCATAGGCGCCC
TGGATTGTTGTTTCCCTACCCTTTACCCATGCCGAACGATGCAAAAAAAT
AGACAGCGTTGCTCTACAACAATAATAGTTTTGATAACCAGCCCGTGTTT
CAAGTAGTGCGTGGGGAGTTTGGTTGTTTACGGCTTGGCTTTACTTTGTC
CGTCTTGGATCTCCTGCTGTGAAGCTTTAGCCGGTTCTTTCATGGAGAAT
GCATCAATCAGAAGCTGGTTTTGATCCCACATGATTGCCGGATTTCGGTA
GTGTTGAGACCTTACCAACGGACGGAGGAGTTTCGAACCATGGGCTGTTC
GATGCGTTGCGCTCCGAAGAACGACATCCCCCGTACAGCTGTACCAACGT
ATAACCAGCATGTTGTCAGCGATGGCACTTTCCCTGCGTGTGCCATGCTG
GTCAATGGCGCTGATCACCGATCGACCTGTGCCCCCCCTCCCGCACATTT
GATGAGATTTTTCTCTTTTCTGTGTTTTTGTTCCCGGAGTTTTAATCTAT
TTAAAACATGTTGCTTGCTTGTTACGGTCTAGATTTTGGCATGGACACTT
TGTTTTGATTAGTGGACGTTCAGGTGTCCGCCTTGCGTCTCACAAAAGCG
ATATTCTTTTAATTGTTGGGCACGATTTTGAGTACGAAGAAGGGTATTTG
CCGCGAAGGCTGTGGTGTTTCCCGCATGAAGTAGGATTTACGGAAACGCT
GTGAGAAGCATTTCTCTGGAATGCCAGAGAATGTGATCCCAAGGCGCGTT
CCAAACGTGAATCGCATACTAAAATGCTGTGCTTTGTGAACGTGATGAAA
ACTCTGCATGGATGTGATCGATGCCGATCCAATCAATCGTTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig197:178284..183776-

>mRNA_P-littoralis_Contig197.39.3 ID=mRNA_P-littoralis_Contig197.39.3|Name=mRNA_P-littoralis_Contig197.39.3|organism=Pylaiella littoralis U1_48|type=CDS|length=744bp|location=Sequence derived from alignment at P-littoralis_Contig197:178284..183776- (Pylaiella littoralis U1_48)
ATGGCGGACGGGAAGGAGCTGAAGGATGAACTCGCCGTGCTTGGCCAGCA
TATGCAGAGGTTTTTCGTGGCTGATCGGCGACCATGGGCAGAATTCTTTG
GGCCTATGGAGCAACCCACATGGACGCAGGCGGAGGTCAAGAAGAGAATG
AGCGCCAACTTTTCCTTCTTCACGACGAACTACCTCATGATCTGCGCCAC
TTGCTCGGCGGTGTACATCTTGCGATCGCCAGGGCTGTTGCTGACCCTGC
TGGTGTCGCTGTGCATGTTCTTGTACGTGTTCATGAGTCGCCGCAAGACG
GTCGTGATACTGGATGTGACGCTAGATACGAGGGCGAAAACTATTGTGGC
TGCTGCAGCGTCCCTGCTCCTCCTCTCGGTAACGGGCTACATCTTCGCGC
TGCAGTTCTCGGGCATTCTCGGGTGCGCTGTGTGCCTCTTGCACGCCACC
TTCCGCCCGCCGGTTGCACGAGCCGTCCGCAATCAACGGGGCGGTGGTGG
CGGCGCGCCAGAGCTCCACGGGGGAGACGGCGATCTGGAGGGCGGGGGGG
CAACCATCGGGCGGGGGCGGCCGGGGCCTGTGAATGCGAACATGCGTCTT
CGAACGAGGCCTGTCCCGGGGGGGCCGATGGGGGGTATGTCCACGACCCC
GCCCCCGGGCGGCGGGGCGGGAGCGGGGTTCCGCGATAGTGCACCGCCGA
TGGTGGACCCGGGCAGCGCGGGCAGGCACTCCCACTTGACCTGA
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