mRNA_P-littoralis_Contig197.36.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig197.36.3
Unique NamemRNA_P-littoralis_Contig197.36.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig197.36.3 vs. uniprot
Match: D8LKY4_ECTSI (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKY4_ECTSI)

HSP 1 Score: 405 bits (1042), Expect = 2.350e-134
Identity = 223/336 (66.37%), Postives = 245/336 (72.92%), Query Frame = 1
Query:  151 VSPSN-LVERLRCSSTLRQPSLLEREWFDLRAPPGLESAPAGDSAXXXXXXXXXXXXXXXXXRSRRASLSLLLREVEGKVEMLVIKRVVNPRDKWSGHIALPGGRHEAGETELQTAVRECQEEVGISLVSSRFELLGRLGDSRTSTSKDALTVSCFVFVQTDKAETPVTVQPSEVAFAWWVDTAMFYPDPVKREAGFPVTGMVKVARKPHWKASCCALMWLLGAETVFFPCFFLPPPPLLG--QPAGHDSTT-ASICVDYPFDAKTFVMWGMTYGVVSRLAVAGGGDAFARPGPPPFRFNSIGADFLVQSFYMFRRWGSGLSDALSSSLAALRLRQ 1146
            ++P+N LV+RLR SS LRQP+  E  WF L+A  G +SAPA DSA                 R R ASLSL+LREV+GKVEMLVIKR V+ RDKWSGHIALPGGR E GETELQTAVRECQEEVGISL+SSRF LLGRL DS+TSTSKDALTVSCF FVQTDK++ PVT+Q +EVAFAWWVDTA+FYPDP  RE GF VT MVK ARKPHWK     LMWL GA TVFFPCFFLPPP + G  Q    DST      V YP DAKTFVMWG+T+GVVS L VAGGG  FA   PP FRF+S+ AD L   F   RRW   L  ALSSSLA LRLRQ
Sbjct:    1 MAPANDLVDRLRSSSKLRQPTPTEAAWFSLQARAGKDSAPAVDSAARVSV------------RPRCASLSLILREVDGKVEMLVIKRAVSLRDKWSGHIALPGGRQEPGETELQTAVRECQEEVGISLMSSRFALLGRLKDSKTSTSKDALTVSCFAFVQTDKSDIPVTIQEAEVAFAWWVDTAIFYPDPAPREVGFAVTSMVKAARKPHWKG----LMWLFGANTVFFPCFFLPPPSVSGRKQSLVDDSTIDVPTPVAYPLDAKTFVMWGLTFGVVSDLVVAGGGRGFAHRQPPYFRFHSVRADTLANMFCRIRRWPWNLRRALSSSLATLRLRQ 320          
BLAST of mRNA_P-littoralis_Contig197.36.3 vs. uniprot
Match: A0A835YXA0_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXA0_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.320e-37
Identity = 99/255 (38.82%), Postives = 129/255 (50.59%), Query Frame = 1
Query:  388 EMLVIKRVVNPRDKWSGHIALPGGRHEAGETELQTAVRECQEEVGISLVSSRFELLGRLGDSRTS-TSKDALTVSCFVFVQTDK--AETPVTVQPSEVAFAWWVDTAMFYPDPVKREAGFPVTGMVKVARKPHWKASCCALMWLLGAETVFFPCFFLPPPPLLGQPAGHDSTTASICVDYPFDAKTFVMWGMTYGVVSRLAVAGGGDAFARPGPPPFRFNSIGADFLVQSFYMFRRWGSGLSDALSSSLAALRLR 1143
            E+LVI+R  N  D WSGHIALPGGR   GE  L  AVRE  EEVG+ + +    LLG+L D R     ++ L V+C+VFV TD   A       PSEVA AWWVD    +P P   +A FPV+   + AR+  W+A   AL      +TV+ PCF LPPPP   +PA  D   A         A+   MWG T+ +V+ L  A GG+      P      ++ AD  +   +   RW   L+  L       RL+
Sbjct:  119 ELLVIRRADNAADAWSGHIALPGGRRARGEDGLACAVREVHEEVGLRVSARTHLLLGKLRDRRAGGDDENPLAVTCYVFVTTDSKTARARPRCAPSEVAHAWWVDVVQLWPVPRVEQAPFPVSAFPRHARRCAWRALRAALR----IDTVWLPCFRLPPPPDAPKPAAADRDAA---------ARALSMWGFTFWLVNDLLSAAGGETCDWLAPHVSTHVAL-ADLALVWLHCAARWLEALAAQLRGQAPRARLK 359          
BLAST of mRNA_P-littoralis_Contig197.36.3 vs. uniprot
Match: T0S3V0_SAPDV (Nudix hydrolase domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S3V0_SAPDV)

HSP 1 Score: 130 bits (327), Expect = 2.370e-30
Identity = 84/214 (39.25%), Postives = 123/214 (57.48%), Query Frame = 1
Query:  337 SRRASLSLLLREVEGKVEMLVIKRVVNPRDKWSGHIALPGGRHEAGETELQTAVRECQEEVGISLVSSRFELLGRLGDSRTSTSKDALTVSCFVFVQTDKAETPVTVQPSEVAFAWWVDTAMFYPDPVKREAGFPVTGMVKVARKPHWKASCCALMWLLGAETVFFPCFFLPPPPLLGQPAGHDSTTASICVDYPFDAKTFVMWGMTYGVVSRL 978
            +R+AS++ +LR    ++ +L I+R VNPRD+WSG IA PGG+ EA ET L+TA+RE +EEVG+ L S+   LLG+L   R +TS + + VS  VF+ T+ A    T+Q SEV+ A+WVD        + RE   P+  M    R+ +       ++ LLG  T+ FPC +LP P       G+D   +    D       +V+WG+TYG+V  L
Sbjct:   26 ARKASVAAVLRVDGDRIRLLFIRRAVNPRDRWSGQIAFPGGKCEANETSLETAIREAREEVGLDLASAT--LLGQL-PVRAATSGNTMVVSTHVFLWTEMAAPAFTLQTSEVSAAFWVDVEHVLTARL-RELRIPLDAM---RRRTNEAPYLHRMLRLLGWSTIAFPCIYLPLP----HQRGNDDERSDRGAD------EYVLWGLTYGMVLDL 222          
BLAST of mRNA_P-littoralis_Contig197.36.3 vs. uniprot
Match: A0A067D8E3_SAPPC (Nudix hydrolase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D8E3_SAPPC)

HSP 1 Score: 123 bits (308), Expect = 7.870e-28
Identity = 86/228 (37.72%), Postives = 119/228 (52.19%), Query Frame = 1
Query:  340 RRASLSLLLREVEG---KVEMLVIKRVVNPRDKWSGHIALPGGRHEAGETELQTAVRECQEEVGISLVSSRFELLGRLGDSRTSTSKDALTVSCFVFVQTDKAETPVTVQPSEVAFAWWVDTAMFYPDPVKREAGFPVTGMVKVARKPHWKASCCALMWLLGAETVF----FPCFFLPPPPLLGQPAGHDSTTASICVDYPFDAKTFVMWGMTYGVVSRLAVAGGGDA 1002
            +RAS++ L R   G   ++++L I+R VNP D WSGHIA PGGR +  E +L +A RE +EE+G+ L    F L+G+L D           V+ FVF    +    +T++PSEVA A WVD A     P++     PV  +        W  +  +L+  L   T F    FPC +LP P    +    D+TT       P  A  FV+WG+TY +VS L VAGG DA
Sbjct:   26 KRASVAALFRHAPGPNPRLQLLFIRRCVNPSDTWSGHIAFPGGRTQPSEMDLDSASRETREEIGLDLDRDGFRLVGQLHDRPVHYGTTV--VASFVFQHDGRTPFKMTLEPSEVADAVWVDVAYLASAPIQ-SLEIPVEMIFP------WLTTYPSLLARLQESTFFKSIGFPCIYLPRP--TEEDDVVDATT-------PRQANDFVLWGLTYTMVSDLFVAGGLDA 235          
BLAST of mRNA_P-littoralis_Contig197.36.3 vs. uniprot
Match: A0A1W0A9G9_9STRA (NUDIX family hydrolase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9G9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.440e-28
Identity = 80/220 (36.36%), Postives = 117/220 (53.18%), Query Frame = 1
Query:  334 RSRRASLSLLLREVEGKVEMLVIKRVVNPRDKWSGHIALPGGRHEAGETELQTAVRECQEEVGISLVSSRFELLGRLGDSRTSTSKDALTVSCFVFVQTDKAETPVTVQPSEVAFAWWVDTAMFYPDPVKREAGFPVTGMVKVARKPHWKASCCALMWLLGAETVFFPCFFLPPPPLLGQPAGHDSTTASICVDYPFDAKTFVMWGMTYGVVSRLAVAGG 993
            R  RAS++ +LR    +V++L I+R VNPRD+WSGHIA PGG+ E GET + TA+RE  EE+G+ L S+  ++LG+L D         L VS  VF+       P  +Q SEV+  +WVD A     P + +   P+  + K+ ++P +        WL G+  V FPC +LP       P  HD            +   +V+WG+T+G+   L  AGG
Sbjct:   23 RVPRASVAAVLRVDGDRVQLLFIRRAVNPRDRWSGHIAFPGGKAEEGETSVATAIREAHEEIGLDLSSA--QILGQLNDRVAH----KLIVSTHVFLLPSAKVPPFVLQTSEVSAVFWVDIAFLATSPPQTQ---PIP-LEKLIKRPSFYQR-----WL-GSSIVNFPCIYLP------SPVSHDQEQ---------NQDKYVLWGLTFGMTMDLLRAGG 211          
BLAST of mRNA_P-littoralis_Contig197.36.3 vs. uniprot
Match: A0A067CX04_SAPPC (Nudix hydrolase domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CX04_SAPPC)

HSP 1 Score: 123 bits (308), Expect = 9.070e-28
Identity = 84/215 (39.07%), Postives = 122/215 (56.74%), Query Frame = 1
Query:  337 SRRASLSLLLREVEGKVEMLVIKRVVNPRDKWSGHIALPGGRHEAGETELQTAVRECQEEVGISLVSSRFELLGRLGDSRTSTSKDALTVSCFVFVQTDKAETPVTVQPSEVAFAWWVDTA-MFYPDPVKREAGFPVTGMVKVARKPHWKASCCALMWLLGAETVFFPCFFLPPPPLLGQPAGHDSTTASICVDYPFDAKTFVMWGMTYGVVSRL 978
            +R AS++ +LR    +V +L I+R VNPRD+WSG IA PGG+ EA ET L+TA+RE +EEVG+ L S+ +  LG+L D R +TS + + VS  VF+  + A    ++Q SEV+ A+WVD   +    P  RE    +  M+   R+    +    L+ LLG  T+ FPC +LP P    Q    D  +          A  +V+WG+TYG+V  L
Sbjct:   27 ARMASVAAVLRVDGDRVRLLFIRRAVNPRDRWSGQIAFPGGKCEANETSLETAMREAKEEVGLDLASATW--LGQLPD-RVATSGNKMVVSTHVFLWAETAAPSFSLQTSEVSAAFWVDVDHLLTARP--RELRIRLDAMM---RRTSEASLLHRLLCLLGWTTIKFPCIYLPLP---HQTCSDDEASHR-------GADEYVLWGLTYGMVLDL 223          
BLAST of mRNA_P-littoralis_Contig197.36.3 vs. uniprot
Match: A0A7S2CMC3_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMC3_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.400e-27
Identity = 89/248 (35.89%), Postives = 130/248 (52.42%), Query Frame = 1
Query:  340 RRASLSLLLREVEGKV-EMLVIKRVVNPRDKWSGHIALPGGRHEAGETELQTAVRECQEEVGISLVSSRFELLGRLGDSRTSTS--KDALTVSCFVFVQTDKAETP-VTVQPSEVAFAWWVDTAMFYPDPVKREAGFPVTGMVKVARK----PHWKASCCALMWLLGAETVFFPCFFLPPPPLLGQPAGHDSTTASICVDYPFDAKTFVMWGMTYGVVSRLAVAGGGDAFARPGPPPFRFNSIGADFL 1059
            RRA++S++LR  E    E+L+I+R  NP+DKWSG IALPGG+ EAGE++L+ AVRE +EEVG+ ++   F+LLG+L D   ++   K  + +S F+F Q D    P + +QP EVA AWW         P +     PVT + K  RK    P    +   +  +L  + +FF C  + PP  + +P                + + F+MWG+T  V S L     G     PG   +R  S  ADF+
Sbjct:   50 RRAAVSVVLRLNENAATELLLIRRADNPQDKWSGDIALPGGKREAGESDLEAAVRETREEVGLDVIGGGFDLLGQLDDRMINSGGKKKKMVISVFIFGQRDGHPRPTLKIQPGEVASAWWA--------PFEELEATPVTELSKPFRKFMRLPF--PADTLVRDVLRCDQIFFSCLAVNPPSKVTKPE---------------EREKFIMWGITLRVFSDLVHRVRGRQLL-PGRT-YRLGSKAADFV 270          
BLAST of mRNA_P-littoralis_Contig197.36.3 vs. uniprot
Match: A0A1V9YGX4_9STRA (NUDIX hydrolase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGX4_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.890e-27
Identity = 83/214 (38.79%), Postives = 121/214 (56.54%), Query Frame = 1
Query:  340 RRASLSLLLREVEGKVEMLVIKRVVNPRDKWSGHIALPGGRHEAGETELQTAVRECQEEVGISLVSSRFELLGRLGDSRTSTSKDALTVSCFVFVQTDKAETP-VTVQPSEVAFAWWVDTAMFYPDPVKREAGFPVTGMVKVARKPHWKASCCALMWLLGAETVFFPCFFLPPPPLLGQPAGHDSTTASICVDYPFDAKTFVMWGMTYGVVSRL 978
            RRAS++ +LR    +V +L I+R VNP+D+WSG IA PGG+ E  ET LQTAVRE  EEVG+ L  +  ++LG+L D R +TS + L VS  VF+    A  P   +Q +E++ A+WVD       P  R+   P+T M++          C   + L+G  +V FPC +L  P        H   +++  V  P D   +V+WG+TYG+V+ L
Sbjct:   26 RRASVAAVLRLDGDRVRLLFIRRAVNPKDRWSGQIAFPGGKSEGNETSLQTAVRETWEEVGLDLNGA--DVLGQLND-RVATSINKLIVSTHVFLLPVNAPVPPFQLQTTEISAAFWVDIHDIVHAP-SRQLYVPITSMMRRTNDSPVLYKC---LDLIGFSSVGFPCVYLASP-------SHPKDSSA--VREPHD---YVLWGLTYGMVTEL 220          
BLAST of mRNA_P-littoralis_Contig197.36.3 vs. uniprot
Match: A0A0A7CPF8_9STRA (Secreted protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A0A7CPF8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.370e-24
Identity = 82/213 (38.50%), Postives = 120/213 (56.34%), Query Frame = 1
Query:  343 RASLSLLLREVEGKVEMLVIKRVVNPRDKWSGHIALPGGRHEAGETELQTAVRECQEEVGISLVSSRFELLGRLGDSRTSTSKDALTVSCFVFVQTDKAETP-VTVQPSEVAFAWWVDTAMFYPDPVKREAGFPVTGMVKVARKPHWKASCCALMWLLGAETVFFPCFFLPPPPLLGQPAGHDSTTASICVDYPFDAKTFVMWGMTYGVVSRL 978
            RAS++ +LR    +V +L I+R VNP+D+WSG IA PGG+ E  ET LQTAVRE  EEVG+ L  +  ++LG+L D R +TS + L VS  VF+    A  P   +Q +E++ A+WVD       P  R+   P+T M++          C   + L+G  +V FPC +L  P        H   +++  V  P D   +V+WG+TYG+V+ L
Sbjct:  278 RASVAAVLRLDGDRVRLLFIRRAVNPKDRWSGQIAFPGGKSEGNETSLQTAVRETWEEVGLDLNGA--DVLGQLND-RVATSINKLIVSTHVFLLPVNAPVPPFQLQTTEISAAFWVDIHDIVHAP-SRQLYVPITSMMRRTNDSPVLYKC---LDLIGFSSVGFPCVYLASP-------SHPKDSSA--VREPHD---YVLWGLTYGMVTEL 471          
BLAST of mRNA_P-littoralis_Contig197.36.3 vs. uniprot
Match: A0A1V9Y5U5_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5U5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.120e-24
Identity = 77/223 (34.53%), Postives = 113/223 (50.67%), Query Frame = 1
Query:  337 SRRASLSLLLRE---VEGKVEMLVIKRVVNPRDKWSGHIALPGGRHEAGETELQTAVRECQEEVGISLVSSRFELLGRLGDSRTSTSKDALTVSCFVFVQTDKAETPVTVQPSEVAFAWWVDTAMFYPDPVKREAGFPVTGMVKVARK-PHWKASCCALMWLLGAETVFFPCFFLPPPPLLGQPAGHDSTTASICVDYPFDAKTFVMWGMTYGVVSRLAVAGG 993
            ++RAS++ L R    V+ ++++L+I+RVVNP D WSGH+A PGGR + GET+L +A RE  EE+G+ L S    L+G++ D           VS FVF           ++P+EV  A WVD       P++     PV  +    +  P   A      +L    ++ FPC +LP P      A  D T+       P     FV+WG+TY ++S L  AGG
Sbjct:   26 TKRASVAALFRHSPTVDSRLQLLLIRRVVNPADTWSGHMAFPGGRAKVGETDLDSACRETSEEIGLDLDSGAVHLVGQIDDRPVHYGTTV--VSSFVFYHDGSEPIAPKLEPTEVQDAVWVDVEYLATAPIQ-SLEIPVEHIFPWLKTYPFLLARLSTSKYL---SSISFPCIYLPRP--TDDAAAPDVTS-------PRPVHDFVLWGLTYTMLSDLLRAGG 233          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig197.36.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKY4_ECTSI2.350e-13466.37Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A835YXA0_9STRA3.320e-3738.82Nudix hydrolase domain-containing protein n=1 Tax=... [more]
T0S3V0_SAPDV2.370e-3039.25Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A067D8E3_SAPPC7.870e-2837.72Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A1W0A9G9_9STRA8.440e-2836.36NUDIX family hydrolase n=1 Tax=Thraustotheca clava... [more]
A0A067CX04_SAPPC9.070e-2839.07Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S2CMC3_9STRA2.400e-2735.89Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A1V9YGX4_9STRA3.890e-2738.79NUDIX hydrolase n=1 Tax=Achlya hypogyna TaxID=1202... [more]
A0A0A7CPF8_9STRA2.370e-2438.50Secreted protein n=1 Tax=Achlya hypogyna TaxID=120... [more]
A0A1V9Y5U5_9STRA6.120e-2434.53Nudix hydrolase domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig197contigP-littoralis_Contig197:171993..176547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008607020.1
PFAMsNUDIX
Model size1957
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0016787
Exons7
Evalue7.54e-33
EggNOG OGsCOG0494@1|root,KOG3069@2759|Eukaryota
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-11_006020.1
DescriptionCoA pyrophosphatase activity
Cds size1047
COG categoryL
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig197.36.3prot_P-littoralis_Contig197.36.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig197 172095..175739 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789944.9489837-UTR-P-littoralis_Contig197:171992..1720941680789944.9489837-UTR-P-littoralis_Contig197:171992..172094Pylaiella littoralis U1_48UTRP-littoralis_Contig197 171993..172094 +
1680789945.0383456-UTR-P-littoralis_Contig197:175739..1765471680789945.0383456-UTR-P-littoralis_Contig197:175739..176547Pylaiella littoralis U1_48UTRP-littoralis_Contig197 175740..176547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789944.963798-CDS-P-littoralis_Contig197:172094..1724141680789944.963798-CDS-P-littoralis_Contig197:172094..172414Pylaiella littoralis U1_48CDSP-littoralis_Contig197 172095..172414 +
1680789944.9750164-CDS-P-littoralis_Contig197:172883..1730001680789944.9750164-CDS-P-littoralis_Contig197:172883..173000Pylaiella littoralis U1_48CDSP-littoralis_Contig197 172884..173000 +
1680789944.988763-CDS-P-littoralis_Contig197:173335..1734121680789944.988763-CDS-P-littoralis_Contig197:173335..173412Pylaiella littoralis U1_48CDSP-littoralis_Contig197 173336..173412 +
1680789944.9986596-CDS-P-littoralis_Contig197:173963..1740301680789944.9986596-CDS-P-littoralis_Contig197:173963..174030Pylaiella littoralis U1_48CDSP-littoralis_Contig197 173964..174030 +
1680789945.0084517-CDS-P-littoralis_Contig197:174295..1744071680789945.0084517-CDS-P-littoralis_Contig197:174295..174407Pylaiella littoralis U1_48CDSP-littoralis_Contig197 174296..174407 +
1680789945.0211046-CDS-P-littoralis_Contig197:175076..1753121680789945.0211046-CDS-P-littoralis_Contig197:175076..175312Pylaiella littoralis U1_48CDSP-littoralis_Contig197 175077..175312 +
1680789945.0298855-CDS-P-littoralis_Contig197:175621..1757391680789945.0298855-CDS-P-littoralis_Contig197:175621..175739Pylaiella littoralis U1_48CDSP-littoralis_Contig197 175622..175739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig197.36.3

>prot_P-littoralis_Contig197.36.3 ID=prot_P-littoralis_Contig197.36.3|Name=mRNA_P-littoralis_Contig197.36.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=349bp
MVENLGGTTQLPACGDVSPSNLVERLRCSSTLRQPSLLEREWFDLRAPPG
LESAPAGDSAGATAGATAGAIAAGVRARSRRASLSLLLREVEGKVEMLVI
KRVVNPRDKWSGHIALPGGRHEAGETELQTAVRECQEEVGISLVSSRFEL
LGRLGDSRTSTSKDALTVSCFVFVQTDKAETPVTVQPSEVAFAWWVDTAM
FYPDPVKREAGFPVTGMVKVARKPHWKASCCALMWLLGAETVFFPCFFLP
PPPLLGQPAGHDSTTASICVDYPFDAKTFVMWGMTYGVVSRLAVAGGGDA
FARPGPPPFRFNSIGADFLVQSFYMFRRWGSGLSDALSSSLAALRLRQ*
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mRNA from alignment at P-littoralis_Contig197:171993..176547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig197.36.3 ID=mRNA_P-littoralis_Contig197.36.3|Name=mRNA_P-littoralis_Contig197.36.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4555bp|location=Sequence derived from alignment at P-littoralis_Contig197:171993..176547+ (Pylaiella littoralis U1_48)
CTGCTGTCTGCTGTCACGAATTCCCACACCCAGCCATCCTCTCGTCGTGC TTCTCCACCGCACACGGACCCATACCCCAATGGTAAAGCGCAGTGCTTGC ACATGGTTGAGAATCTTGGAGGCACAACACAACTCCCCGCCTGCGGTGAT GTGTCGCCTTCTAATCTCGTAGAACGGTTGAGGTGCTCGAGCACGTTGAG ACAGCCGAGCTTGCTGGAGCGGGAGTGGTTTGATCTCAGAGCCCCCCCAG GCCTGGAGAGTGCCCCAGCAGGCGATTCAGCTGGTGCTACTGCTGGTGCT ACTGCTGGTGCTATTGCCGCTGGTGTGCGAGCAAGATCTAGACGTGCATC GCTGTCTCTTCTTCTTCGTGAGGTGGAGGGAAAGGTGGAAATGCTTGTCA TCAAGCGGGTCGTGAATCCCAGGTGATGGCAGTTGATGATGCGACATGAT ACGAGCGTCCTTGGACGCCCCTGGTCTGGTGCATTTGAGTCCTCCTGTAT ACACATGTGTAGCAATATAGTGCAGTCGAGCTGCAAGGAAGTACATGCAG TGGTGGAAATGCCCCTTCTGGTACATTTGAGTCCTCCTGTAAATGCAGTG GTGGAAATGCCCCTTCTTCCCTGGACAGAAAACCCGTACAAGATCTCCCC AGAATGGTTCTCAACTCTAGGATTTCATTTCGCTGTGAGGCTCTGCGGTC AGCTCGAACATGATCCGCGCGCCTCTTTTGTAGGTAATGTCCCAGCTGAA AATGACGGAAATGACTTTCTGTGGAGATTCTCACGACTTTTGTGCTGGCT CTCTGATCCAGTACCGCCCTCTCGCCTCCTTTCTCCTGCTTCACTTTGCT GTTCCTCTTTGACCGCATGCACACTGGACTACTCCTTGCAGGGATAAATG GAGTGGACACATCGCCTTGCCGGGGGGGAGACACGAGGCCGGAGAGACCG AACTGCAGACGGCCGTGAGAGAATGCCAAGAAGAGGTTGGAATTTCCTTG GTCTCCAGGTACGTACAGTACTCGTATCATATGGCGCTCGTTTGGAACAT TGTCTCTGCGGATCGAACAGAAGACTGCAATTCTTATATACCTTTGCTCG TGCCGGAGTGTGTGTCTACGCAGGAGCGCCCCATCGCGCCCAGCTTAGTC GTCAGCCCTGAGCCAATGTACTCTGACTTATTTCCTTTAAGTCATGCACG GAACGCTCCTAGTCGACGGCACAACGGTAATCATTAATTCGAAGTATTTG GCCGTCTTCCCTGCTTGCCTCGCCGGACACTGTCTGTCCGTTACCGCCGG CATTTTCCTTGATGACGCACTGCTTATCGCATCTGGTATGCAGTCGCTTC GAGCTTTTGGGAAGACTGGGTGACTCCAGGACAAGCACGAGCAAAGACGC GCTTACCGTTTCATGTTTCGGTAAGCGCTACACAGCTCCTTGGATAATAG TCAGTTTCTTGTTCCCCCTTTTGCTTGATTCGGGTCTACCGTCTGACATA CGGACATAGTAGGAACAACTCGCCAAGAATAACGTTCACGAGTGATAAGT CATATTGGCGTCTACCGTATGGCATGCGGTGCATAGAAGGATCAACTCGC CAAGAGTAACGTTCACAAATGATGAGTCATAGCTCCTCAACAGCATTGCA TTTCCACGCAACGCACACAGCATCCTTTTTTTTTTTTGTCACTGTTTGTC GTCTGGGTGAAGGGGCGCGCTTGAACCAACCAGAGGCCTCTTGTGCCATC ATTACTCCGAATGAAAAGCAGCATCGATGAACCTCCACAACAAACAGAGA AGGATTGACCACTGTCGTTAAAGCGCCACCTTCACGTACTTCGAAGGGGT CCAGGCATGCCGTTACGTTTGCTCGCCCTCAAGATTTTGACTCAATTTCG TGCTAAGTGACGTGTTCCGTCCGCTTGTCATGACGCCTCCACCTCTGTTG TGTGAATTCCACTCAATCAAGTGTTCGTGCAGACCGACAAGGCGGAGACA CCCGTGACTGTCCAGCCATCAGAGGTGGCGTTCGCTTGGTGAGATAAAAA AGGGGAAAAACAAGGAGATGAATACTCGGGAAGGGGGAGAGAGAGAGAGA AGGGGGAGAAGTGGAGCGTCCTTGTTGTTCTTAGGTGTTGCCATAAACTA AATGCCACTGTTTCGTTTTTTACCGATTTGATGGCATGTCTCAGTCAATC TACTGCTGTACTGCCTTCTTTTTCGACCTTGCCCTTTCGAGAGGTTGTGG TTACATGTAAGACTAGACCACCAAGTTTCGCCTTTCTGCGCGCTTCATCC CAGGTGGGTAGATACGGCAATGTTCTACCCTGACCCCGTCAAGAGAGAGG CTGGTTTTCCTGTCACCGGCATGGTCAAGGTTGCGCGAAAGCCACACTGG AAGGCAAGCTGTTGTGTGCGTTTCACGCTGGCCGATTCTTGAGCCATCGT TGCGCCTACCGGCGTTTCACAAGAGGCAGTTGTTCATTTTCGCGTCGAAG TCTATTGCTGGCGTTCCATCAACCTACAACGGACGGTGCCATCTAAATTA AGAGAGAGAAAAGGTGCCCGCAGTTTTCTGATTGGTCAATTTTTTTGAAA GGAGATTAATAAATTAATAAATGCAGTAGCTGTGTCAACAGCGGAACCGC GGTCGCAGACTACGACTGCTATGTGTGTGTGTTGTCATCCCTTCAATTGG ACGCCACGCTGTTCCTTTCGGGTACGTAAACGCTCCAATCGGGGGACACA CAGCAGGAAGTCAACCCAAGAGCTTTTTGGGGGGGAGGGGAAGGAACAAA AATGGAAGGGCCGCAACGAAAAATAATTGCCTCCAACCGGGATCGAACCA GTGACCTTGGCAACTTCAGTGCCACGCTCTCCCAGCTGAGCTATAGAGGC TTTCGTATTATGTGGTCGGATTTTAACAGCTCTAAAGATGCTTGCAGACC TCGAAATAGCGGAGGGGATGACTAATGTCATGCATACATGCGCTATTTGA TAGCTACCCCCCCCCCCATCCCGCCCTTAACCGCAGGCTTTTCGCCCTTC TCGACGTCCGCTTCTTTTGTTTCATCTCCCACAGGCGTTGATGTGGCTGC TCGGGGCAGAGACTGTCTTCTTCCCCTGCTTCTTCCTGCCCCCACCTCCC CTTTTGGGACAGCCTGCAGGTCATGACTCCACGACAGCTTCAATCTGTGT CGACTACCCATTTGACGCAAAGACGTTCGTGATGTGGGGGATGACCTATG GGGTGGTTTCTCGCCTAGCAGTTGCTGGCGGCGGAGATGCGTTCGCCCGC CCAGGCCCTCCGCCCTTCCGGTTAGTGTCCCAAATCATGCACTTTTCCTT AACAAAAATCCCTGCCCCCCCCCCCCCCCTGGATTCCATGACGGAGTACT TTACCAGCAACTGATACACGGGGATCCTAGGGTGCATATGGTGGGACGCA GGGCGACGGCCACCCCGACAGGGTCACGTTTTTCACTTGTTGATGATATA AAGGCTTGAGTCAACCTTCGCTCGGCGCTTCTGACAAGGAACTGTTCGCT TGCAAATACCCCCGCTGTTCCTTATGTGCTGTGGTACGCTCGATGTGCCG GTGCACTCGCTTATGATGGCGGCCTGTAGGTTCAATAGTATCGGGGCGGA CTTCCTGGTGCAATCGTTCTACATGTTTCGAAGATGGGGATCCGGCCTAA GCGACGCACTCTCTTCTTCGTTGGCTGCACTGCGCCTTCGCCAGTGATTG GCTAGTGCCAAAGCCCGGCCTGTGCTACATGTGTAAATTTAGGGCTTACA CCCACGGGCGCCACCCGCTGTACGTGTTTCATCCTCGCCATTTCATTTTG TTTTTTTATTTATTTATTTTTTGCCTCCAGGTTGTGTACGACGTGGGGCT GGACTCTGGCGGTGATCTTATCGTGTGAGAATAACTCGTAAAACAATGAC GTGAAGGGTAATAGTATGTGAGAGTCGACAACCAAAAACAAGTGTCACTC CCACATCCGAGTCTGACTGACTGGCGGTACTGTACGTCACATCTTCTTAA CACGCGATACCACTATCGGCGATGTGGAATACGTGTGCAGCGGACCCTTC AGAAATACCCGACATCTCAACAGAACGTTTGGTGACTAGTCAGGTTAGAG GGGTTTTGCGGTCAAGAATCGTCCGATGGACAGATAGTGGATGAGGAAAT TGTTGGTTGGATTGGATGTAGTTATTTCGACTACAATATTCGGGGAAACG ACACAACAGGGTATGTCAATTTGCTACATAGCAGGGTACACACCTCTTTT CAACGTGACATGAATGAAGCTGATTGGTCAACGTTCATTTTCATCCCGTG GTGGCGGAAACAGCGCTGAGTACACCTCGCGGCAGATGTTTTTCGCCGAA CTCGTACCGTAGGTCGCATAAGAAATCAAACCCCGGTGATAAAATTTTTG GGTTTGAAAATATTATCACCCGGGGTGATTTCCTGCAGGGGGGATAGGGG GGTGTGATATCTTAGGTGACCCAGGTGATGAAATACATTTCACCAGCGCT CGGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig197:171993..176547+

>mRNA_P-littoralis_Contig197.36.3 ID=mRNA_P-littoralis_Contig197.36.3|Name=mRNA_P-littoralis_Contig197.36.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1047bp|location=Sequence derived from alignment at P-littoralis_Contig197:171993..176547+ (Pylaiella littoralis U1_48)
ATGGTTGAGAATCTTGGAGGCACAACACAACTCCCCGCCTGCGGTGATGT
GTCGCCTTCTAATCTCGTAGAACGGTTGAGGTGCTCGAGCACGTTGAGAC
AGCCGAGCTTGCTGGAGCGGGAGTGGTTTGATCTCAGAGCCCCCCCAGGC
CTGGAGAGTGCCCCAGCAGGCGATTCAGCTGGTGCTACTGCTGGTGCTAC
TGCTGGTGCTATTGCCGCTGGTGTGCGAGCAAGATCTAGACGTGCATCGC
TGTCTCTTCTTCTTCGTGAGGTGGAGGGAAAGGTGGAAATGCTTGTCATC
AAGCGGGTCGTGAATCCCAGGGATAAATGGAGTGGACACATCGCCTTGCC
GGGGGGGAGACACGAGGCCGGAGAGACCGAACTGCAGACGGCCGTGAGAG
AATGCCAAGAAGAGGTTGGAATTTCCTTGGTCTCCAGTCGCTTCGAGCTT
TTGGGAAGACTGGGTGACTCCAGGACAAGCACGAGCAAAGACGCGCTTAC
CGTTTCATGTTTCGTGTTCGTGCAGACCGACAAGGCGGAGACACCCGTGA
CTGTCCAGCCATCAGAGGTGGCGTTCGCTTGGTGGGTAGATACGGCAATG
TTCTACCCTGACCCCGTCAAGAGAGAGGCTGGTTTTCCTGTCACCGGCAT
GGTCAAGGTTGCGCGAAAGCCACACTGGAAGGCAAGCTGTTGTGCGTTGA
TGTGGCTGCTCGGGGCAGAGACTGTCTTCTTCCCCTGCTTCTTCCTGCCC
CCACCTCCCCTTTTGGGACAGCCTGCAGGTCATGACTCCACGACAGCTTC
AATCTGTGTCGACTACCCATTTGACGCAAAGACGTTCGTGATGTGGGGGA
TGACCTATGGGGTGGTTTCTCGCCTAGCAGTTGCTGGCGGCGGAGATGCG
TTCGCCCGCCCAGGCCCTCCGCCCTTCCGGTTCAATAGTATCGGGGCGGA
CTTCCTGGTGCAATCGTTCTACATGTTTCGAAGATGGGGATCCGGCCTAA
GCGACGCACTCTCTTCTTCGTTGGCTGCACTGCGCCTTCGCCAGTGA
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