mRNA_P-littoralis_Contig197.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig197.16.1
Unique NamemRNA_P-littoralis_Contig197.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig197.16.1 vs. uniprot
Match: D8LKX9_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX9_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 5.790e-49
Identity = 107/174 (61.49%), Postives = 123/174 (70.69%), Query Frame = 2 
Query:   47 GTTSRG-RPTPPATPPSACSPHPSWE--GAAETVSPQSLEKGLAAPTSAVDDVAEKFGRPRAHSTSRRDMYLPAWEEEEDAEGGAAITSSGPSRLEDRRRAVSMSFAEEYRR-----GRPSRQASALQKQCVDCHLSPSFAMEGEPAIYCRAHQLEGMVNVLREACTQAGCQRT 544
            GT SR  +PTPP TPPSACSP+ S    G++ET SP SL KG+ APT+AVDDV EKFGRPRA S SRRD+ LP  EEE          +    RLEDRRR VSMS  E +R       R +RQASA+ K+C+DC+L PSFAMEGEPAI+CRAHQ+EGMVNVLRE CT  GC RT
Sbjct:   24 GTPSRHYKPTPPPTPPSACSPYRSVSEGGSSETCSPHSLRKGITAPTTAVDDVVEKFGRPRARSLSRRDLSLPPLEEE----------APEIVRLEDRRRTVSMSITEGHRYDGGGGSRSARQASAVNKRCLDCNLPPSFAMEGEPAIFCRAHQMEGMVNVLREGCTTQGCCRT 187
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig197.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKX9_ECTSI5.790e-4961.49EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX9... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig197contigP-littoralis_Contig197:111713..117055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2055
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-11_005960.1
Cds size447
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig197.16.1prot_P-littoralis_Contig197.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig197 113533..115691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789944.1542692-UTR-P-littoralis_Contig197:111712..1118731680789944.1542692-UTR-P-littoralis_Contig197:111712..111873Pylaiella littoralis U1_48UTRP-littoralis_Contig197 111713..111873 +
1680789944.167177-UTR-P-littoralis_Contig197:113449..1135321680789944.167177-UTR-P-littoralis_Contig197:113449..113532Pylaiella littoralis U1_48UTRP-littoralis_Contig197 113450..113532 +
1680789944.2370396-UTR-P-littoralis_Contig197:115691..1170551680789944.2370396-UTR-P-littoralis_Contig197:115691..117055Pylaiella littoralis U1_48UTRP-littoralis_Contig197 115692..117055 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789944.1809273-CDS-P-littoralis_Contig197:113532..1136791680789944.1809273-CDS-P-littoralis_Contig197:113532..113679Pylaiella littoralis U1_48CDSP-littoralis_Contig197 113533..113679 +
1680789944.193822-CDS-P-littoralis_Contig197:114081..1141741680789944.193822-CDS-P-littoralis_Contig197:114081..114174Pylaiella littoralis U1_48CDSP-littoralis_Contig197 114082..114174 +
1680789944.2058628-CDS-P-littoralis_Contig197:114833..1149171680789944.2058628-CDS-P-littoralis_Contig197:114833..114917Pylaiella littoralis U1_48CDSP-littoralis_Contig197 114834..114917 +
1680789944.2240489-CDS-P-littoralis_Contig197:115568..1156911680789944.2240489-CDS-P-littoralis_Contig197:115568..115691Pylaiella littoralis U1_48CDSP-littoralis_Contig197 115569..115691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig197.16.1

>prot_P-littoralis_Contig197.16.1 ID=prot_P-littoralis_Contig197.16.1|Name=mRNA_P-littoralis_Contig197.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
MYLPAWEEEEDAEGGAAITSSGPSRLEDRRRAVSMSFAEEYRRGRPSRQA
SALQKQCVDCHLSPSFAMEGEPAIYCRAHQLEGMVNVLREACTQAGCQRT
ASYGFPGEGRQRCFSHMEEGMAHVLEASTTTEVPSAHKERGTTRRMSS*
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mRNA from alignment at P-littoralis_Contig197:111713..117055+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig197.16.1 ID=mRNA_P-littoralis_Contig197.16.1|Name=mRNA_P-littoralis_Contig197.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5343bp|location=Sequence derived from alignment at P-littoralis_Contig197:111713..117055+ (Pylaiella littoralis U1_48)
CACACAGGCTGCAACGACTCTAGAAAAAACGACCACTGCTGTCCCTGGCA
CGACTAGCCGCGGCAGGCCCACCCCCCCCGCTACTCCTCCCAGCGCGTGC
TCGCCTCATCCGTCTTGGGAGGGAGCGGCAGAGACTGTATCCCCCCAGAG
TCTGGAAAAAGGTATGGTAAATAGTAAATGGTGAATAGATTGTTTCGTCG
ACTGTTATGTTACAGGACATATGATATGTTACTGCACAGGATGTGGGTTG
TAAAGGCTGCAGGACCGGATGTGTGGATCGTCAAGGCAATCTGGGAATAC
AGTAACGGGTTTCGGACTTCGCAGGTCTTCTCCAACAGAGCTAGGAGGCG
CCTGATTTTGCTGCTTTCGAAACTCTACATCTTAGCACGATGTTCCGTCG
CAGAACTCTCCTCGAGGAAGTCGCTGTAAGATTGGAGGCTCTTAACTGTT
GTAGGATCCAAGCCTTCGACATTATGTGCACACTCACCATGTTGCTTCAT
CGACTTTGTAAGAAGCCCGGATGCTGCGGTACAGGTCTGATTTTTGAACG
CTTCCAGCACACAGAACCCGAAAAATGAGAGCATACGTGAGAACCTGCGA
CAACAATTTTTACTACTAGCATCTACAAACGCATCCGACCTATCGTCGTG
ATTAATACTAAGGCCGCAGGTACGTACGTGTGCTCTTTTAGGGTCGAGTT
TACTGGAAGCGTCTAATAATATGGCCGCTACAGCACAGCATTCGAGCTGC
TTCTCGAAGCTCACAGAACTCGATAAAGAAGGGCTGGTTTCTGAAATTGT
AAACGGCGAATCTGCATGCTGCATGGACTTGGATCCTAGACACTCAAAAT
AGCTCACAGAGCGACTGCCTCCGGTAATGTTTTGCGCGTATATTTATTCA
TAATAAAGATGGAGTTCGGAAAACCAAAATAATCAGGCGTTTCCTGAATT
TGTTGGAGATCTACCAAGTCCAGAACATCTTCCTGGGTGGCTCTATAAGT
ATTACAGACTGACCGCGAATCGTGAACCACCGGAAACTAACGCAATGAAA
TACAACACCCGGAGTACTCCCGCTGAGGTGTTTGCACGCACCACCTACCA
TCTTTTTTGGAAAGAAATTTCTTCAGAACTTTCTGATTGGTGGAAAAACA
CCTGGTCGACCGGTGACGTCATCCACGGCAGTAACGTAGTTTCCCGGAAA
AATCCAAGCTTCTCAACTTCACCTTGGATGACGCTGACGTCAGTCATCAG
TCACATACCGCACCCTCTCTGCACAAAATCCTGACCGCTGATGAATACAT
GCATATGACATAAATAAGTACAAACTACATGTAAACATGCATACATACAT
ACATACATACATACATATACACACGCCAGCTTTGTCCATACGATGTACGT
CGTAGGGTGCACAGCAAGCAGTTGAGGTCGTTCTTTATTATCCTTTGCAA
GTGGTATTAACAAAAATGACCTGCTGCTGGTGACACGTACGATGTAAACA
AGTACCATACCTAGATACAGCTGCACTAGACTGTCCATCAAATACTCAAC
ACAAAGCAGGTAACAACCACACTTTGCCAGACGGTAAAAATTGTCTTGGC
TCTGCGCAACGAATGTGTGCCACTGTCATTTCGTCAGATGCATTTCATTT
TTTTTCGAAAACAATGCGGCAAGCAAGAACCAACCCCATCTTGCAACCCC
CCCCCTCGCCTCACCCCCCATTTTTCCATGCTTTAAGGCCTCGCGGCGCC
CACAAGTGCGGTGGACGATGTTGCAGAAAAGTTTGGTAGACCTCGGGCAC
ACAGTACAAGCCGACGCGACATGTACCTCCCGGCATGGGAGGAAGAAGAG
GACGCCGAAGGGGGGGCGGCGATCACAAGCTCCGGACCGTCGCGTTTGGA
AGATCGCCGCAGGGCCGTGTCCATGTCGTTCGCCGAGGAGTACCGTCGGG
GGAGGCCGAGCCGTCAGGTGACTTGTTGTTCAAGGGTTAGGGTTTGCGGC
GTGATGGCAAAGCTTGGAAGTGTTCCTACTGCTGGAGTGCGGTGACATGT
GCTGACACGTGGTGGTGGTGATGATGATGATGATGATAATGGCGGCCCAA
TGCCAAGGGCTTAAACAATTCGGTATTCAAATTTCGTCGCATTTTTTTAA
CGCTTGGGATGCAATACGTACATGCGAAATGACTTCTCGCACCAACGGCA
GTGCCTCCGCAAGAACGGTTCGACAAGAATGCGTGTGTTCCCTCTCCACG
GGATCGTAACCAGCCGTCTCTTTCCTTGCTTGTTTCGTGGTGTTTTACAT
CGCGTTCCACACGTCTTACCGAACCGTCCCCCACTTCCTTACGGGACGCA
ACCCACCCCATTTTTCTAGGCTTCGGCGCTCCAGAAGCAGTGCGTCGACT
GCCACCTTTCGCCGTCCTTTGCGATGGAAGGAGAACCAGCGATTTATTGT
CGTGCCCACCAGGTGCGGCCGGCCTCGTGTTCGCTGTTACCATGTGTCTG
CACCTCGACAAACGTTCCTGGACCTGTTTACCAAACCCGGTAGTGTCTCA
CTCCCGTTCCGTGTTAATCCACCTGTCTTGACGGAGGCTGCTGCCGTGCC
CACAACCTGATGGCGTACATTAGAAACAAATAACGCAAGACACGGGCATC
TACCTCGAGATCTTGGGGGGTAACAAAACAAACACACGTGTGTGCAAGGT
GTGCACTTCATTTTTAGTCGATTGTCTCGTTCCAACGTTCACAACTACGT
ATGCGCTGTGCTTCAAGTGCGAAAAAAATCCTTTCCCCCTCCGTCGCCGA
ATGAAAAACCAGCCCTTGTACACAGTAGTACGCGCTCGAGGCGCTTCTCC
TGTCAACACGAGCGCACCCTTTCGACAGTTTCGCCCGTTAAGCGCTGCCC
GAGCAAAAAGTGGGCATGTCTCACCTGCCAAGCTGTACCCATATTCATCG
GCCACCCGCCCTGCATTTTTTGCTTGCGAGCTTACCGCATACATTTCGTG
TATTACATCCCCTTTTCTGCATTCCATTCGCTATATTCCATCTTGCTGTG
TTCCATGTTCTGCATCCTATTAACTACCGTCACCTTACCGTAAACAAATG
CATTTCGTGTGATATTATCAGCTGGAGGGCATGGTCAACGTCCTGAGGGA
GGCATGCACACAGGCAGGATGCCAAAGGACAGCCTCGTATGGTTTCCCAG
GAGAGGTGAGAAGGGCTTGACCGCCTGATACGTGCTGCAAGCCAAACCAC
CGTTCTGTTGGAAGCATGTGTTCGATGGTGGTGCATGGTATCCTTCCTCC
AATAAACTTCGCCGGCTGTGTGCGTTCACAGTTTTAAGCGGGCATATTTG
GCTGTAATTGTTGCAGTAAAGTACCGGGTAGAGCGCTATTTGGCGGTCTT
ACAAAGCCCGCTTTACGTTTAGGCTCATCATCGTAGGATGAAAGAACCGC
ATTGTTGTGTAAAGCTTCAACGTGGTATGTCACTGAAGAATTTCCACGGG
TACAAACGCTACTGCTGCTATCTCCTAAATTTTTTTCTGTGTCAGCCGAA
ACGTGTCGCTGTATCATTATTCCACAAACATTTCGGAGTTCAAACGTCAC
CCACACGACTGCTAGTACTAACAAGGTATTAGGCGCACGCTCCGCCTCTC
CCGGGGCGGAATCCCAAGGCCACGATAAATTCGGGATTGAATGGATAGTG
CGAAGTTTTTTGAAAGTATCGTGGAAAGGAGTGGGGTTTTGTTTTTGCGT
TTTTTTTTCCCTGTTGTCATCATCACAAAAGCATTTGTCGCTGCGCCGTC
CTCTCTTCAGTACGCACCTACATGGCGTAATATGTTTTTTGCCGTTTTCG
GTGCAGGGTCGGCAGCGTTGCTTTAGCCACATGGAGGAAGGAATGGCACA
CGTCCTAGAGGCATCAACAACAACAGAGGTACCCTCTGCGCACAAGGAGC
GTGGAACCACGAGACGGATGTCGTCGTGACCACGAGACAGGCATACAGCG
GTAGTAGTGTCGACCACAAGTGTTCGTCAATGTCACCTCGGCCTTTCGTG
CAAACTCTGTATATTTTTTGTACTGCTGGGGGTCCCTTGTTTTTGGTTTT
CGTTCTTGTGGTTTAAATAGCACGTCGACTGGTGTCGGGCCTTTATTATT
GCATCACGTGCTTGGTGCACAGCAGTTGCATACCCGGCACTGTTCGGTTA
AAGCCCACTTTGCGAGCAGGAGTGAAACGCCGATCCCTGCTGCTGTCTAT
TACGGTGTAGTCACCCGCAGGAGCTGGACCGAGCACGAAAAGCGCATCGA
CCGGGTGTAATTTTGTATTTGTTTTGAAGTGTTGATGTTTTTTACGGGAT
CAAGATGGTTTGATAGACTCCCAAGCTGGCAGTCTCTTATTCGACGAAGG
GTATGGTTGGTTGATATTCTGATTGCCGATATTCCGGCAGAACGTGCGCT
GGGTGAGGGGTCGATGAGTGGGGGGAAGGGTCACGGTCTGCAATCTTTTC
TATTCCCTGTCTCGTTGGGTTTGAGGGAGTGCCCCTGTGTATTTTCTGTT
CGTTTCCTCTCATGCGATACACGTTCGCTATTTTGCTGTAAATCCCGAGC
ACATGCATGACATTTGTTTGGGAGCATGATATATTCTGAGAAGATTGACC
GCGGTGAGGGGTTTATTAACTCGCACCGAAAACGAGCGCCCCGCGGCCAA
CTCTACGACAGGGGGGGGGTATCTGCGAAACGCCAACTGCAGGCATCATA
GCTGGTACCCTGAGAATCCCCCTTGGGGCAATGCCCCGATTTTTCTCAAA
AACAAACGCTTGTGTCCACGGAGCCCGCGATGTCGTGCCTAGTAGCCGCT
GGGGATGGCTTGGGGTCCTTTTGATGCAAGTTTGCTTGGAAACCGCTATT
GTGCGCATGTGTGCGCATTTCATGAGAGGATTAGAGTGACTTGGTCCTTT
TTTTGGTCGCTCTGGTTTCTATTGTTTACCTTGAAATGGTCAGGAAATCG
ATTTTCTTCGTCGCAAGATAAGTGGTGGTCGTTCACGTGCTTTTTGAGTT
GAAAGCCATGACACGTATGCATGAAGCTTTCTTCTTTTTCCTACTGCTCA
GGAGACATGCGTTAGATTTAGTATGATTCGAGGCAATCACGGAGGTGATG
CGTGCGTGTCTACTCACCTTTTCTTCTGTTGAAGCGCAGGAAAGGAGTAA
CTGCTGTCTTGAACAGCAAAAAAACTCCCAAACCAGCAACGGTTGCTTTT
TGATGAAGAATCACACCCCGCCCCCCCGACAAATGTTTTTTCCCGAGCCC
ACAACTCTACTTCAGGGGGTGGGGGGGGAGCCGCCGACCCTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig197:111713..117055+

>mRNA_P-littoralis_Contig197.16.1 ID=mRNA_P-littoralis_Contig197.16.1|Name=mRNA_P-littoralis_Contig197.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig197:111713..117055+ (Pylaiella littoralis U1_48)
ATGTACCTCCCGGCATGGGAGGAAGAAGAGGACGCCGAAGGGGGGGCGGC
GATCACAAGCTCCGGACCGTCGCGTTTGGAAGATCGCCGCAGGGCCGTGT
CCATGTCGTTCGCCGAGGAGTACCGTCGGGGGAGGCCGAGCCGTCAGGCT
TCGGCGCTCCAGAAGCAGTGCGTCGACTGCCACCTTTCGCCGTCCTTTGC
GATGGAAGGAGAACCAGCGATTTATTGTCGTGCCCACCAGCTGGAGGGCA
TGGTCAACGTCCTGAGGGAGGCATGCACACAGGCAGGATGCCAAAGGACA
GCCTCGTATGGTTTCCCAGGAGAGGGTCGGCAGCGTTGCTTTAGCCACAT
GGAGGAAGGAATGGCACACGTCCTAGAGGCATCAACAACAACAGAGGTAC
CCTCTGCGCACAAGGAGCGTGGAACCACGAGACGGATGTCGTCGTGA
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