mRNA_P-littoralis_Contig197.58.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig197.58.1
Unique NamemRNA_P-littoralis_Contig197.58.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig197.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig197contigP-littoralis_Contig197:231137..231600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size464
Hectar predicted targeting categorysignal peptide
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789943.1395757-CDS-P-littoralis_Contig197:231136..2314661680789943.1395757-CDS-P-littoralis_Contig197:231136..231466Pylaiella littoralis U1_48CDSP-littoralis_Contig197 231137..231466 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789943.1506884-UTR-P-littoralis_Contig197:231466..2316001680789943.1506884-UTR-P-littoralis_Contig197:231466..231600Pylaiella littoralis U1_48UTRP-littoralis_Contig197 231467..231600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig197.58.1prot_P-littoralis_Contig197.58.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig197 231137..231466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig197.58.1

>prot_P-littoralis_Contig197.58.1 ID=prot_P-littoralis_Contig197.58.1|Name=mRNA_P-littoralis_Contig197.58.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MGLSFYCLFCPGGVQATAVKCRNINIDICCIRFHSYRCESLTRLTPQRWP
EDDLVLLYKDVALVSVATGPPVFAGATAAAVAAFGPIVGTAPAPRPLPKI
LRRFRRCCCC
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mRNA from alignment at P-littoralis_Contig197:231137..231600-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig197.58.1 ID=mRNA_P-littoralis_Contig197.58.1|Name=mRNA_P-littoralis_Contig197.58.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=464bp|location=Sequence derived from alignment at P-littoralis_Contig197:231137..231600- (Pylaiella littoralis U1_48)
CTCATTTCACCCAATCACAGGATGTGTTCTTTGGATTTTCCAGCTCTAAT
ATGAACTTTGATTTCTAACTTTGATTTTGATTTCTGGTTAAGACCCAGCC
TAGGAGTCAGTAGACAGCGGGGCGGAACAATTCCATGGGGCTTTCCTTTT
ATTGCCTCTTCTGCCCGGGCGGAGTGCAGGCCACTGCGGTGAAGTGTCGA
AATATAAATATTGACATTTGTTGCATAAGGTTCCATAGCTATCGCTGTGA
GAGCCTGACCAGACTTACACCACAGCGCTGGCCCGAAGATGATTTGGTGC
TGCTGTATAAAGATGTAGCACTTGTCTCCGTCGCCACTGGGCCTCCTGTG
TTTGCCGGCGCCACCGCTGCCGCCGTTGCCGCCTTTGGGCCCATCGTTGG
GACCGCCCCCGCCCCCCGCCCCCTTCCTAAGATACTCCGCCGCTTCCGTC
GCTGCTGCTGCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig197:231137..231600-

>mRNA_P-littoralis_Contig197.58.1 ID=mRNA_P-littoralis_Contig197.58.1|Name=mRNA_P-littoralis_Contig197.58.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig197:231137..231600- (Pylaiella littoralis U1_48)
ATGGGGCTTTCCTTTTATTGCCTCTTCTGCCCGGGCGGAGTGCAGGCCAC
TGCGGTGAAGTGTCGAAATATAAATATTGACATTTGTTGCATAAGGTTCC
ATAGCTATCGCTGTGAGAGCCTGACCAGACTTACACCACAGCGCTGGCCC
GAAGATGATTTGGTGCTGCTGTATAAAGATGTAGCACTTGTCTCCGTCGC
CACTGGGCCTCCTGTGTTTGCCGGCGCCACCGCTGCCGCCGTTGCCGCCT
TTGGGCCCATCGTTGGGACCGCCCCCGCCCCCCGCCCCCTTCCTAAGATA
CTCCGCCGCTTCCGTCGCTGCTGCTGCTGC
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