mRNA_P-littoralis_Contig197.79.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig197.79.2
Unique NamemRNA_P-littoralis_Contig197.79.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig197.79.2 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.250e-34
Identity = 87/177 (49.15%), Postives = 105/177 (59.32%), Query Frame = 3 
Query:   21 GASERADSPAVGGREAVCRVQSSRRGYQFVDNYFVRVLGGRAAWELPPGAVGATKLAAARIALGKFEVILRQACLATDLALLTPYLNDDDGDNNMADADVDDEAPASDASSGTSVNSDNEP*EEPSLFLPPGITGQRLVRVNRWDLQLWEFANGLAASRSSTLEGYLCGSSELARMQ 551
            G  E    P  GG+ A     S R+GYQ +DNY VRVL G++AW+LPPG VG ++L AARIALGKFEV+LR  CLA DL LL PYL        +ADA          A     +    E     + +L  G  G +L+R NRWDLQLW+FA+ L  SRS+T EGYLCGSS  AR Q
Sbjct:  103 GLEEGMSWPERGGKRADAS-SSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKSELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADA----------ARETEDLLESGE-----AHYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSASARRQ 263
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BLAST of mRNA_P-littoralis_Contig197.79.2 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.810e-33
Identity = 88/181 (48.62%), Postives = 105/181 (58.01%), Query Frame = 3 
Query:   21 GASERADSPAVGGREAVCRVQSSRRGYQFVDNYFVRVLGGRAAWELPPGAVGATKLA----AARIALGKFEVILRQACLATDLALLTPYLNDDDGDNNMADADVDDEAPASDASSGTSVNSDNEP*EEPSLFLPPGITGQRLVRVNRWDLQLWEFANGLAASRSSTLEGYLCGSSELARMQ 551
            G  E    P  GG+ A     S R+GYQ +DNY VRVL G++AW+LPPG VG T+L     AARIALGKFEV+LR  CLA DL LL PYL        +ADA          A     +    E     + +L  G  G +L+R NRWDLQLW+FA+ L  SRS+T EGYLCGSS  AR Q
Sbjct:  103 GLEEGMSWPERGGKRADAS-SSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQVGIPAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADA----------ARETEDLLESGE-----AYYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSTSARRQ 267
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BLAST of mRNA_P-littoralis_Contig197.79.2 vs. uniprot
Match: A0A7S0JDT9_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JDT9_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 2.320e-5
Identity = 47/153 (30.72%), Postives = 69/153 (45.10%), Query Frame = 3 
Query:   75 RVQSSRRGYQFVDNYFVRVLGGRAAWELPPGAVGATKLAAARIALGKFEVILRQACLATDLALLTP----------YLNDDDGDNNMADADVDDEAPASDASSGTSVNSDNEP*EEPSLFLPPGITG-QRLVRVNRWDLQLWEFANGLAASRS 500
            R +  R   Q  DNY+VR LGG AAW +P G +  + L AA  AL +F+V++  A L+ D  +             +       +N+  A V+   PA     G            PS  +PP     +RLV   +WD  L+E+A  +AA R+
Sbjct:  137 RARHHRAKVQLRDNYYVRSLGGPAAWGVPEGGLTRSHLLAAARALSRFDVVMTVATLSRDAPIQMARVGLPNFQWRHARYRSRQDNLERARVE---PALQMDGG------------PSCDVPPTAAQVRRLVAACQWDAVLYEYARLIAARRT 274
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig197.79.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSI2_ECTSI1.250e-3449.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKJ1_9PHAE1.810e-3348.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0JDT9_9EUKA2.320e-530.72Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig197contigP-littoralis_Contig197:328463..331301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size552
Hectar predicted targeting categoryother localisation
Exons5
Cds size366
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig197.79.2prot_P-littoralis_Contig197.79.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig197 329419..331301 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789942.996213-UTR-P-littoralis_Contig197:328462..3285521680789942.996213-UTR-P-littoralis_Contig197:328462..328552Pylaiella littoralis U1_48UTRP-littoralis_Contig197 328463..328552 -
1680789943.0054727-UTR-P-littoralis_Contig197:329323..3294181680789943.0054727-UTR-P-littoralis_Contig197:329323..329418Pylaiella littoralis U1_48UTRP-littoralis_Contig197 329324..329418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789943.014117-CDS-P-littoralis_Contig197:329418..3294321680789943.014117-CDS-P-littoralis_Contig197:329418..329432Pylaiella littoralis U1_48CDSP-littoralis_Contig197 329419..329432 -
1680789943.0240705-CDS-P-littoralis_Contig197:329639..3298001680789943.0240705-CDS-P-littoralis_Contig197:329639..329800Pylaiella littoralis U1_48CDSP-littoralis_Contig197 329640..329800 -
1680789943.0343437-CDS-P-littoralis_Contig197:330241..3303491680789943.0343437-CDS-P-littoralis_Contig197:330241..330349Pylaiella littoralis U1_48CDSP-littoralis_Contig197 330242..330349 -
1680789943.044998-CDS-P-littoralis_Contig197:331218..3313011680789943.044998-CDS-P-littoralis_Contig197:331218..331301Pylaiella littoralis U1_48CDSP-littoralis_Contig197 331219..331301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig197.79.2

>prot_P-littoralis_Contig197.79.2 ID=prot_P-littoralis_Contig197.79.2|Name=mRNA_P-littoralis_Contig197.79.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
QKKSENTVRARGLTVPPWEAVRPFVACRALGEATSSWTTTSSACWVGERR
GSFPQGLLEPPSSRRHASRSESLRSFCGKLVSRQISRCLRPTSTTTTVTT
IWPMPMSMMRLRLRTRRVALA*
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mRNA from alignment at P-littoralis_Contig197:328463..331301-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig197.79.2 ID=mRNA_P-littoralis_Contig197.79.2|Name=mRNA_P-littoralis_Contig197.79.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2839bp|location=Sequence derived from alignment at P-littoralis_Contig197:328463..331301- (Pylaiella littoralis U1_48)
CAGAAGAAGAGCGAAAACACGGTGCGAGCGAGAGGGCTGACAGTCCCGCC
GTGGGAGGCCGTGAGGCCGTTTGTCGCGTGCAGGTGTGAAGATGCTCGGT
GTCTACGCAAAGAGTCTGATATTTTGTGTTTTTTAACGATATGGTATTTA
TATTTTTGTGATATGACATGTACACCCAAGAATCCGCTCGACAATCTAAT
GTGTCTGATTCTTTGTCATGAACTAGTTTGTATGTGTACCGGTACAGGTA
TAAATATTTCGTTTTTGTCATGCACTCACAAGTCCGCCAATCTTGTGTCC
GCAGGTCTAAAGCAGCAGTAGTACCGACCGGGAGTAGGCAAGATCACCAC
ACGTGTGTCGGCTGGTGCTAGGAGTTTGGTCCAGAGGGAAGAGAGCATCA
GGTTTTCTTGCATGCCAAAACGAGAATCGGGAGCGCCGGAAACAGCTTAA
CCCGAGCACCAAAACTGATTGCGTACGTATTATATGGATTCGGCGTTAGC
TCACACAGCCAACAACAAACAACGAGCAGTGTCCTTTGTTTTCGTTATTT
TTGGGAGCAACAAAGCCGCTTCACTCAAGACTCTCCGAGCTATTTCGGTG
AGATCACAGTCAAGACCCTCCGAGCTATTTCGGTGAAAATAGAAAATAGA
TGCCAGCGGCCACCGCGAGCCCCTCCAACTTCATTCACAGCCCATACTTT
GATACATCGCATGAAACAACACGTACACACACAGAGCAGGAGAGATTGTT
CGACATCAGTTTTGCGCCAGCAGAGACGTGTACAGGCGTGAACGAGGTGA
GGGAGCTCTCGACAGGGGCCACGACGAAGGGTCCGACCATTACTGGCAGA
AGTTCTGCCGATTGGATTGGAGTGGATTGGACTGTGGTTGTTGTGTTGTG
TCCCCCCACCCCAGCAGGCGTTCTTGCCAATGTTACCTCTTCTTCCCCTC
AGAGCTCTCGGAGAGGCTACCAGTTCGTGGACAACTACTTCGTCCGCGTG
CTGGGTGGGAGAGCGGCGTGGGAGCTTCCCCCAGGGGCTGTTGGAGCCAC
CAAGCTCGCGGTACGGTGTGGGTGGATGGAATGGATGGGATGGGTCAGGC
AGAATGCGCTCGCACCGTTGTTCTTGCTGTTGTCATTTGCAGTAAGATAG
AGACTTGGGAACGGGCGCGAGCATCTAGTTTCCGAGTTTACTTTCAGGAT
CTCGGCCGCATAGTCGACGGGTGCACAAACATTTTGGTATCATGCTGTTC
ACAAACGGGGGGATTCACTCATTCCCCTTGGGGAGCATACGTGTGTCTGG
CTTCTTGCGTTGTCGCTGCTGCCGAGGCATGTTCATTCACGTATTGCATC
AAATGTTACTTGCTGCCCGCGCTAATTTGCACGGCTGTGCTGATTTATGT
CTGTTGGCAAGGACGAAGAGACGATATTTCTGGCTGTCTGTCTGCCTGCC
TGCCTGTCTGTCTGTGCGCGCCCTCCCTGCGTCTCTCTTGCCTCTTTGCA
GGCGGCACGCATCGCGCTCGGAAAGTTTGAGGTCATTCTGCGGCAAGCTT
GTCTCGCGACAGATCTCGCGCTGCTTACGCCCTACCTCAACGACGACGAC
GGTGACAACAATATGGCCGATGCCGATGTCGATGATGAGGCTCCGGCTTC
GGACGCGTCGAGGTGGGTGGGTCGGTTGAGGGTGGGTGGCTGGGTGAGTG
GTGGGTGGGTTGCATGCCATGAACACGTAATCATCAGATCTTTCTTTCTC
TCATGTTCTGTCTTCTCCACCCCCCATATCTTCCACTCCCTCCCTCCCTC
CCTCCCTCCCTCCTCTCTCTCTCCTGGTCTTTCTCGCCGTCTCTCGCCTC
TATCCCAACAACTCGATAGTGGCACTAGCGTGAATTCCGACAACGAACCA
TAAGAAGAGCCTTCCCTCTTCCTGCCTCCGGGGATCACGGGGCAACGCCT
CGTCAGAGTGAACCGCTGGGATTTGCAGGTGATTTACCGCCCTCCCCAGC
CCTCTCCGCCACCTTCTCTCCTCCCCTCTCCTGCTTGTCCCTTCCCGACT
TCCGTCCCCGCCCCCTGCCTCCACCCGCGGGATGTACACGCGGGTACAAG
AGAGCGGCACTCGAATGGGTTGGTGCCCGAGGTTTGGTATGCCCTTGCCG
CGCAATTATTTCTTTTTCTCGTGAAAGCAAGATTCTTGTTTGTCGGCGAC
GGTTGATGATGATGCCATCCGTATCTAATAAAACCTACGCATGTGATGTT
AAGCCCTGCTCTTGTGTTTTCGGTCGAACCGCGCTGTGTATTAGATAGTC
CCTTTGAACGAAGTCGATGCGAGCCGTCTTACACTGCCCTTTTGCCTTTG
CAAATTTGCCATCGCAAATCTGTCGGATGATATGTGGAAAAGTACATGGA
AAAACATTACACCCAGAAACTTTGTTGACGAATGAGCTGCAACTAAAGAC
GCCGTGAACCCTACGGCAACAGGTATCATATATGACAGGTTGTCTCTCAG
TTTAACAAGCCAACCACTTCGTGCACAGATATCATAACATCAACGACAGA
CGACATACAGTAGTGCTAGCTGGTTGACACGTGAACCCTTACGACAACAG
CTCGGGGATGACTGGTGCTGCGCGCCGGTTTTGTGCTTGTGCTTGTGCGT
TTGCTGTGCTGTACTCGCCATCCACCGGGTTGTTGTGCGGTGTCGTGTTG
TGTCGTGTCGTTCCGTGTTGTCGGTTCGCGCGTCACGGAAAACGTCAAGC
TTTGGGAATTCGCGAACGGGCTAGCGGCCTCCAGGAGCAGCACCCTGGAG
GGGTACCTCTGCGGCTCTTCAGAGTTAGCGAGGATGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig197:328463..331301-

>mRNA_P-littoralis_Contig197.79.2 ID=mRNA_P-littoralis_Contig197.79.2|Name=mRNA_P-littoralis_Contig197.79.2|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig197:328463..331301- (Pylaiella littoralis U1_48)
CAGAAGAAGAGCGAAAACACGGTGCGAGCGAGAGGGCTGACAGTCCCGCC
GTGGGAGGCCGTGAGGCCGTTTGTCGCGTGCAGAGCTCTCGGAGAGGCTA
CCAGTTCGTGGACAACTACTTCGTCCGCGTGCTGGGTGGGAGAGCGGCGT
GGGAGCTTCCCCCAGGGGCTGTTGGAGCCACCAAGCTCGCGGCGGCACGC
ATCGCGCTCGGAAAGTTTGAGGTCATTCTGCGGCAAGCTTGTCTCGCGAC
AGATCTCGCGCTGCTTACGCCCTACCTCAACGACGACGACGGTGACAACA
ATATGGCCGATGCCGATGTCGATGATGAGGCTCCGGCTTCGGACGCGTCG
AGTGGCACTAGCGTGA
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