prot_P-littoralis_Contig196.83.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig196.83.1
Unique Name	prot_P-littoralis_Contig196.83.1
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	1544

Homology

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BLAST of mRNA_P-littoralis_Contig196.83.1 vs. uniprot
Match: D7G865_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G865_ECTSI)

HSP 1 Score: 775 bits (2002), Expect = 6.290e-261
Identity = 437/786 (55.60%), Postives = 524/786 (66.67%), Query Frame = 0

Query:   70 MRFVSTDGKSAASWLELSDDDESVRKMTCEH-LINAITYVPPLNVVAAASDGNLIIFDGRTMRRVSTLSTSNKVLLQLYYNNTRDEIISGSSDGCFVWRLAAIPCEQYALEVVPYELRLLRGFKGCSRWAGNMAWDEATQVITAIDGMRVKTYDAIAAT-NLHTIRRAHECPVTVGLWMGENQNIVTGCMSGLLKIWACQHTNFTGGRRXXXXXXXXXGARNRPRQPSSGQKGHGQSPALVKQFEGHSEAITGLVRHCSNTSCIVTCGADGSLRVWDIDRLALVTNVRLPGAAASLWALFGPGGRSRVVWAGAEGRIRTMVMSQVCQPLSFDTEEARNIQYSSPLGKNIEEAQSISPVASCDGIFFQEKWWVGLLLVQMKHGRWGLMSESVLPPTNKRSVAGVVPTTPATPTSQADSSNLSV--SDERRDFVARSESKSPGQEGEDAEAAIREEGDTTSSLFCSWPPLSCVIERYSHHVLSHKGLRVICLADSGVLDTYLFGSAKGEARKINSRKIDLHANSATATCMCLLPDTPACVVAALDRFLASHTPVNDTFDD-PGPGGDAGEGGDNENYRDNPCGGIGWRKKAHQMMSEQDDQVVAIGTSHGGVILVETVVNGTTLDFLEGLFASKVIHMAFCYASTDDAIRDSEAAPGNKRSTTDMKNSQRLVCVGYNTNGTVTIKGLAIPSLTEIFSLNLIEVPTCVRVASRRPFLAIGFADGALNMVCFGQDRIHDIDNNALAGAHAAKINTISFSTVYRCMATGSADGCIMIWDLDGQQLHAIHLQ 850
            MR VSTDG+S  SWLEL + D SV+    EH +INAI Y+PPLNVV AAS  +L++FDGRTMR ++TLSTS KVLLQL YN  RDEIISG SDGCFVWRL A P + YA EVVPYEL LL GFKGCS WAG M +DE +QVI  IDGM+V+ YDA AAT NL+ I+RAHE PVTV LW+GE++NIVTGCM GLLKIWACQHT+  G +R             R R   S +KG G+SPALVK FEGHS  ITGLVRHC N+S IV+ GADG+LRVWD+DRLA VT V                                          S +++                                     VGL+LVQMK G WGLMSES+L PT  +       +  +T T+    + L    +DE +    R+E K    E  D +A   +EG+TTSSLF SWP LSCV+ERYSHHVLS +  RVICLA SGVLDTY +   +GEARKI+SR +DLHAN ATAT MCLLP TP  VVA+L+R L S T ++    D P  GG  GEGG+++NYRD PCG  G RK+  Q+  E+ DQVVAIGTSHGGV+LVETV NGTTLDFLEG+FASKV+HMAF YAS+D AI  SE+  GN+ STT  ++  RL+CVG++TNG V +KGLA+ SLTE FSL LIE PTCVRVAS RP LA+G+ADG +N + FGQDR+ ++++  L G H A+I+TI+FST Y CMATGSADG IM+WDL+GQQLH IHLQ
Sbjct:    1 MRIVSTDGRSIDSWLELGNGD-SVKTARVEHNVINAIAYIPPLNVVVAASGDSLVVFDGRTMRCLATLSTSKKVLLQLQYNLARDEIISGGSDGCFVWRLTAAPFKPYAQEVVPYELTLLHGFKGCSHWAGRMFFDERSQVIITIDGMKVQKYDAGAATTNLYIIKRAHESPVTVVLWVGESENIVTGCMGGLLKIWACQHTDANGVKRSRRGRWRQH---KRLRCARSHRKGCGRSPALVKSFEGHSGGITGLVRHCLNSSYIVSSGADGTLRVWDVDRLAAVTAV------------------------------------------SRESD-------------------------------------VGLVLVQMKQGLWGLMSESLLLPTGTQPATNTKTSVSSTATTCVSQAGLIPPGTDESQHSFERTEGKISNLEFGDGDAIALDEGNTTSSLFHSWPSLSCVVERYSHHVLSRRRRRVICLAGSGVLDTYAYDPERGEARKISSRDVDLHANGATATSMCLLPGTPDYVVASLERLLPSQTSMDAPLSDRPICGGAIGEGGNDDNYRDRPCGRTGRRKQESQVAREKVDQVVAIGTSHGGVVLVETVANGTTLDFLEGVFASKVVHMAFSYASSDGAILPSESDLGNELSTTCAQDG-RLICVGHDTNGAVALKGLAVSSLTEQFSLRLIEAPTCVRVASERPVLAVGYADGTVNAINFGQDRVTEVESGQLIGTHTAEISTIAFSTRYHCMATGSADGLIMVWDLNGQQLHGIHLQ 702

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig196.83.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig196.83.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G865_ECTSI	6.290e-261	55.60	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 304..344 e-value: 1.9E-6 score: 37.4 coord: 129..167 e-value: 3.5 score: 13.6 coord: 89..126 e-value: 15.0 score: 9.5 coord: 225..265 e-value: 0.71 score: 17.9 coord: 793..838 e-value: 0.0024 score: 27.1
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 808..838 e-value: 0.014 score: 16.2 coord: 308..344 e-value: 8.7E-4 score: 20.1
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 806..840 score: 11.678087
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 311..353 score: 10.876051
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 651..875 e-value: 1.2E-12 score: 49.7
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 186..406 e-value: 1.1E-15 score: 59.7
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 34..182 e-value: 7.0E-6 score: 27.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 971..1031
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1504..1533
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 488..516
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1341..1406
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 977..997
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 465..487
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 618..638
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 465..516
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1341..1363
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1492..1544
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..290
None	No IPR available	PANTHER	PTHR19857:SF8	MITOCHONDRIAL DIVISION PROTEIN 1-RELATED	coord: 201..875
None	No IPR available	PANTHER	PTHR19857	MITOCHONDRIAL DIVISION PROTEIN 1-RELATED	coord: 201..875
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 311..346 score: 8.861059
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 806..840 score: 9.757418
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 825..839
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 331..345
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 97..875
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 552..871

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig196	contig	P-littoralis_Contig196:383410..399513 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig196.83.1	mRNA_P-littoralis_Contig196.83.1	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig196 383398..399513 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig196.83.1 ID=prot_P-littoralis_Contig196.83.1|Name=mRNA_P-littoralis_Contig196.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1544bp
MRTDKEGDDEPGIPGDLDEDGRPYFFPSNQKRPADSREQRDGFIPKWEYR
GHTDIIKGICATGEDSFGRMRFVSTDGKSAASWLELSDDDESVRKMTCEH
LINAITYVPPLNVVAAASDGNLIIFDGRTMRRVSTLSTSNKVLLQLYYNN
TRDEIISGSSDGCFVWRLAAIPCEQYALEVVPYELRLLRGFKGCSRWAGN
MAWDEATQVITAIDGMRVKTYDAIAATNLHTIRRAHECPVTVGLWMGENQ
NIVTGCMSGLLKIWACQHTNFTGGRRGRRRRRRRKGARNRPRQPSSGQKG
HGQSPALVKQFEGHSEAITGLVRHCSNTSCIVTCGADGSLRVWDIDRLAL
VTNVRLPGAAASLWALFGPGGRSRVVWAGAEGRIRTMVMSQVCQPLSFDT
EEARNIQYSSPLGKNIEEAQSISPVASCDGIFFQEKWWVGLLLVQMKHGR
WGLMSESVLPPTNKRSVAGVVPTTPATPTSQADSSNLSVSDERRDFVARS
ESKSPGQEGEDAEAAIREEGDTTSSLFCSWPPLSCVIERYSHHVLSHKGL
RVICLADSGVLDTYLFGSAKGEARKINSRKIDLHANSATATCMCLLPDTP
ACVVAALDRFLASHTPVNDTFDDPGPGGDAGEGGDNENYRDNPCGGIGWR
KKAHQMMSEQDDQVVAIGTSHGGVILVETVVNGTTLDFLEGLFASKVIHM
AFCYASTDDAIRDSEAAPGNKRSTTDMKNSQRLVCVGYNTNGTVTIKGLA
IPSLTEIFSLNLIEVPTCVRVASRRPFLAIGFADGALNMVCFGQDRIHDI
DNNALAGAHAAKINTISFSTVYRCMATGSADGCIMIWDLDGQQLHAIHLQ
SPVIAVEFMEVSGVLLVSSSSGMSRIPPCRWCPQSLLVAKERANRRAAAA
SSSSSNIKSRARQIHSTTIESEEGFVPVMVRANGKAIGGLGDVCVQENES
VVTHDLLSKRQEHVELEVYNTGNTCGKEDKTETRRNTRSRDRSGDKKQGV
SSGAVAEREWTSQAATGVGNVPRIPPPVRSQGHVTLRESRSIGDRNITSI
LDLMSAKFSSMPTSPPPQKVFLTKVRKKQLCTSHPSVYNSLGDRVKSGKA
LPEDHCAHRDERFGVAPTRAPTPTTLPASGSKSLGDDGNSAVDGTTIVGG
TVDEKPVEAVSEALCSAGDKSALDNGASLTAAATAVRQPLCTVVAETPLS
SAAQSTNTAQAVSTALFPLSGNFSDGVAPCSILGQHAAICTTERGTAISA
PSARHGANGAAETVKDLIELGNSKRDNLICVKDLQRPMAVKRSHIRRNEP
RFAPGVTVMSSETRSAFAIEQGLPFDTAENKGGLERLIDKTPVADEVDKD
QPRSFHRDLSSDRDIPVPVPPPYDPSSWEDPQDTLMGIRPYRSGRRREQQ
QRGPTQPLLFIDSCAGTVAAVAVKDAHNVTPPVSVPALIIRPYLVEDLMT
FVSQPLRYPSPPVSRNDCRAFGVISPFSWSADSVDRRVTCTPQPAGDQDT
PREAVSQRGGSSPCGNRHIKTSSQSNNLPNNSFFPVRPRAGRRV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR019775	WD40_repeat_CS
IPR036322	WD40_repeat_dom_sf