mRNA_P-littoralis_Contig196.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig196.62.1
Unique NamemRNA_P-littoralis_Contig196.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig196.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig196contigP-littoralis_Contig196:241004..245491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size931
Hectar predicted targeting categoryother localisation
Exons6
Cds size903
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig196.62.1prot_P-littoralis_Contig196.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig196 241004..245463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789940.6471143-CDS-P-littoralis_Contig196:241003..2411891680789940.6471143-CDS-P-littoralis_Contig196:241003..241189Pylaiella littoralis U1_48CDSP-littoralis_Contig196 241004..241189 -
1680789940.6567347-CDS-P-littoralis_Contig196:241471..2416241680789940.6567347-CDS-P-littoralis_Contig196:241471..241624Pylaiella littoralis U1_48CDSP-littoralis_Contig196 241472..241624 -
1680789940.6703117-CDS-P-littoralis_Contig196:241932..2420711680789940.6703117-CDS-P-littoralis_Contig196:241932..242071Pylaiella littoralis U1_48CDSP-littoralis_Contig196 241933..242071 -
1680789940.6804013-CDS-P-littoralis_Contig196:243467..2436641680789940.6804013-CDS-P-littoralis_Contig196:243467..243664Pylaiella littoralis U1_48CDSP-littoralis_Contig196 243468..243664 -
1680789940.6904387-CDS-P-littoralis_Contig196:244085..2442681680789940.6904387-CDS-P-littoralis_Contig196:244085..244268Pylaiella littoralis U1_48CDSP-littoralis_Contig196 244086..244268 -
1680789940.7111871-CDS-P-littoralis_Contig196:245418..2454631680789940.7111871-CDS-P-littoralis_Contig196:245418..245463Pylaiella littoralis U1_48CDSP-littoralis_Contig196 245419..245463 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789940.7234387-UTR-P-littoralis_Contig196:245463..2454911680789940.7234387-UTR-P-littoralis_Contig196:245463..245491Pylaiella littoralis U1_48UTRP-littoralis_Contig196 245464..245491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig196.62.1

>prot_P-littoralis_Contig196.62.1 ID=prot_P-littoralis_Contig196.62.1|Name=mRNA_P-littoralis_Contig196.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=301bp
MLGSRLDEWFLMPRKHFLNLQEFPGYSSVRPCLVRHVSTLVPYECHVFTG
AKGHRITVRRNEVAFFSHCWDLPPDQCPPRPDLLDGPHPDTPDRTKLQHM
KACLEEAPSSVQYVWVDMLCVPLAQSKRRRASGRSVPYFVQNSGRFYILA
PDAAGLQRHKKRAWCRLEALCAACPYRPCHVESAFSAKPAWNSASARFVY
DSVDCFVTTWDKGIRHEARVSGSDEFIAAGFLGDPVAGKLSDPKDRQDIA
EATLRAVNAMESSGRIAPDVAKRLRFSSKKVLYGSQGWEGRAADEEELRS
L
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mRNA from alignment at P-littoralis_Contig196:241004..245491-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig196.62.1 ID=mRNA_P-littoralis_Contig196.62.1|Name=mRNA_P-littoralis_Contig196.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4488bp|location=Sequence derived from alignment at P-littoralis_Contig196:241004..245491- (Pylaiella littoralis U1_48)
GCTAGTTCTGGAAGACACGGAGGCAACCATGCTTGGGTCGAGGCTGGACG
AGTGGTTTTTGATGCCACGGAAGGCGAGTGGGCAAGAGGGAGAGAGAGAG
ACATCTACGTCGTACAGTACGGGGTATTGTCTTTTGGCAGACTGCCATAC
AACATGAACAAGCATTTTCTTTGAGAGTCCACGGGGGCGCCCCAGAAGCT
GTAGAGGCTGCGGTTGTGGGCTGAACCGTGGTAGGCGCAGGAGGAACCCA
AGGTCGCGGACAAGCTCTTCTACGGTAGCCGATGCTGTACTTGTTTCAAC
CATGAAACATACGAGATATCTCTTGTCTTACCAGGTATGTATTTTGTCGT
GGACGTCGTGGACATGATTTCTGCTGAGATGAGCTTAAACTTGGGAGGGA
AAGAGCGATACTCGGTCGTGACCTTGACCTAAGAATGACCACTACGGATG
TGTGAATGGTTTTTTTTATTCTCAATAGAATATCATGTATCTACTGTCGT
CCAGGTTTATATGCACATCATATTTGGAATCCATTGTTTGGTATGATATC
TCCCACATCTGTCAAAGTACCACTCCTGATGTCGACACGCCCAGACGAAA
ATTTGGAGAAGCCGGGGCGAATACTGAGGTATGGTACGGTGCCGGCAATC
TTTCCGCGCAAACCGCCTCGGGCTGAAAAGGTTCGCGGGGCGTTCGTCTC
TTTTTATGTGTCGGGGGCACTCCCGGGCACGTACACACACAAACAAATGC
TTTACAGTGAATCTCGCACTGGAACCAACAACATCAACATCATCAACAAC
AAGAACAGCAAGAACAACAAGAACAAGAACAACAAACAACAACGAGTATT
GAAGATTGCAGGGTCAGTTTAGAACTGCCTTCCAAAACGCTCGCTGATGG
GAGCGCGATGCAAAGAGCATCCCAAGTGCAAGAAGAGCTTCGTGAAGAGA
AAAGGGAGTGTGTTTGTGCCGATCGGACTTCCAACACCACCGGTGACGCA
TTTCGCCTATCACATTGCTTCCTCTCCAGACAGAATATCCATTTTCCCCA
TCCCGAACGCTCGTGCGCGCCGGGCACCACACACCGAACGCTCTTGCGCG
AGTTGTATCGGGTACGCACCTCCGCATCCTTGCTGCACTGGCCCTGACTC
GTCGCCATTTTATCGTACCCTCACCCGCCCGATGACGCCTCCTCTGTGGA
TCGTTCGTCGTGACGAAACACAGCACTTCCTTAACTTGCAGGAATTTCCG
GGCTACTCTTCCGTGCGCCCTTGCCTGGTCCGCCACGTGTCTACGTTGGT
TCCCTACGAGTGTCACGTCTTTACTGGAGCAAAGGGGCACAGGATTACGG
TCCGTCGGAACGAAGTAGCGTTTTTCTCCCACTGCTGGGATCTCCCGCCA
GACCAGGTGTGCCTCACGTGCCTATTTTAAGAGATCAGTTAATACGTCAA
CATTCGCACGCTGCAGGTACAGAATGTAGCCTGGAAAGTTTGGTAATGAA
AGGGGAAATACGCTGTTTCATTGACTCTGTATTTTCTCGACATTCGCATC
ACAAGCCTCCACGTCTGAAAGTGCAACGTTCGCTTCCTTTTCGAGCCCTC
TGGTGAAGTGTTTCGGAAACAACAAAAAAGGAAGTGATGATGTGGCGACT
CGACGCAGCACGCCAACATAAATCAAGCCTCTCACACACATATGTGCTAC
GTATCGAGGCTGTACGCTGAGCTTCACCCCGAGACATTCATCAATGCCAT
CCACTCCCCCCTCCCATGCATGGTCCGACACGGCCAAAACCCATCACGAA
TGATCACTATATGGACTACGGTGGTAGTGCCCCCCGCGACCGGACCTCCT
GGATGGGCCGCACCCGGACACGCCCGATCGAACGAAGCTCCAGCACATGA
AGGCATGCCTTGAGGAAGCCCCGTCGAGCGTTCAGTACGTGTGGGTCGAC
ATGCTTTGTGTGCCGCTGGCGCAGTCAAAAAGGCGGAGGGCCTCCGGTCG
CTCGGTCCCGTACTTCGTGCAAAAGTGAGAAGCAAATGCTATCATAACTA
GATCGACCGGGCCTGGCCGTGTCACTTTTTTCGCCTTGTTTATAGTTGAG
AAGGTGGAAAAGTTTTGCGTTCAGGTGAGTTTCAGGCAACCTGGGAATAC
CCTAGAGTTCTCTGCACGTTTTGCCCTGTACCAAGGCGCGAGCGGTGGGG
AAATCGACCTCGCAGGTAAGTGAAGGAACTGACTGCTGTTGACAGAGGCA
TGGACGGTGCAAGATTGCCTATCATTTCTGTGTTTTTGTTCATGACTTTC
GAAAAAACGGGTTGAAAGGTGAACAAGCATCGATGATCAAATCGTACATG
ACGGTGGCGTCGGGCTTCTACGCCTATCGCCCCTGAAACTCTCTTCGGTT
TGAAAAAATACGAGGTGTGTTTTTGGCCGAAATCACGCCAAAATCGCCCC
AGTACGCTTCCTTATAACCCTGACATCCTCACGAAAACAACTACTCCGAG
TATTTGTCTTCTCGAGAAAACAAAATATTGTTTTCCTGAAGATTCAAAGC
ATCTGTGGCGGCGGCATTGATCACGTCGACTGCCGCAAGTTGTCGTTTAT
TTACCATGAATCAATCTCCTCCCTCATCAGCCAGCGTCAGCGAAAAAGAA
AAAGGTAGGTTATCTCGGTGAAGTTTCGTTCTCTAAGAAAATAGAAAAAA
ACTTAAGGGTTTTGATGAGAGAAGGAAGCGTCCGCCGCCCTCTATTTCAA
AATTAAATTGATTGTTTACAGCATTTAAAAGCGAACAGAATTGCCTTCCA
GTTTCTTTTTCCCCCAATATCTTCAACATTTTGTTCTCACGATGAAAGAA
ACAAAACTAAAACGAACAAATCCCACGAGCTGTTCAAATCCGGTGACGTG
TTTTGTTCCCGGGAAGTACACGCCCCAGGTAATGTAGCGTTTTTTGGGCA
TGAAGCAACGCGAGGAACGATGAGAAATACTGAATCTACGCAGGGGGTTG
TATTTCAAATTTGGAGCAATCGCATGGAAAATACAAACTTTGTCTTGCAC
GGGGACCATACCTGAAACACACACTTCGAAGTACTAAATGTCGCCATGTG
GCAAAAAACAAAAAAACAGGGGAACAACCAAGATCTGAACATTGCTCCTG
GCAACATGTTCACAATCGACGCCTTTCCCTGCCCCTCCAGCCGTCGATCC
CGCCGTCTTTCTTTGTGTCGAAACGACTCTTCTAATAATGTAAGAAGCAC
AAACATCTCTGCCATCTCGTTCACAACATCAGGATCATGTCGTTGCGCTC
CGGATCACTTCGTCTGACGCCGACCGTCGGTGTGAAATGTTTGTTTTTGG
TCGCTCGTCGCCCCCCCCCCCCCTATGTATCACTGTTGTTCGTCCCGGGG
GTGGAATGCTGGGTAAAAAGCTCGGGAAGGTTTTACATTTTGGCGCCGGA
CGCCGCTGGCCTCCAACGCCATAAAAAACGCGCATGGTGCCGCCTAGAGG
CCCTCTGCGCCGCATGCCCCTACCGGCCTTGCCATGTCGAATCAGCCTTT
TCAGCTAAGGTATGGGATGCGATTGATCAACGTTTTATTTACATTTATAG
TAGTAAAACGCGCCTCGGGACCCGAACTTATGACGTACGCCCCATATGTA
TCCTGGTGTGTACAACTTGATTAAGTGGAACTTGGGCCGGGTGGTGACCT
GTGAAAGAGCCAGGAGTTAGTTACAGACGCATCACAATATGTGGTACTCC
GTCAAGCGAGCGGAACCTTTCACGTCTCTCATTTTCCCATCGTTCTATAC
TCGCACGGGGGTGCCTCTCCGTTGTGCCACACCGCCCTCCTCCTCTACGC
GTCGTTGTGGTGTGTAGCCGGCATGGAATTCGGCGTCGGCTCGCTTTGTG
TATGACTCCGTCGATTGCTTCGTCACCACGTGGGATAAAGGCATCCGACA
TGAGGCGCGGGTTAGTGGGAGCGACGAGTTCATAGCAGCAGGGTTCCTGG
GCGATCCAGTGGCGGGTAAGGTACGCGTGTGTATCTGGATTGTTGGGAAA
AAGGGCGGCGTTCGCAAACCGACAAATGTCTCCAAGCACGACTTATTGCG
GGGGCCCGAAACAAGACCGTCCAATGTCTCTTTGAACGTCTAGACACATA
TGAGGACCACTACAGCAGTTGTAGTGTAGTAGCATTAGAATATCACGCGT
ATTTGAGCCACCCAAACAGCAGCTCCACAAGCCCTATACTCTCTCCGCCC
GTGGCGAAACGAAGATTGTCGAAACATCCGCGTTGATTTCCGAAACAAGC
AGCTGAGCGACCCGAAGGACCGCCAGGATATCGCGGAGGCTACCCTCAGA
GCGGTCAACGCGATGGAGTCGTCTGGCCGAATCGCCCCGGACGTGGCCAA
GCGCCTGCGGTTCTCCTCGAAGAAAGTTCTCTACGGCTCCCAAGGTTGGG
AGGGACGAGCTGCAGACGAAGAAGAATTGCGTTCTCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig196:241004..245491-

>mRNA_P-littoralis_Contig196.62.1 ID=mRNA_P-littoralis_Contig196.62.1|Name=mRNA_P-littoralis_Contig196.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=903bp|location=Sequence derived from alignment at P-littoralis_Contig196:241004..245491- (Pylaiella littoralis U1_48)
ATGCTTGGGTCGAGGCTGGACGAGTGGTTTTTGATGCCACGGAAGCACTT
CCTTAACTTGCAGGAATTTCCGGGCTACTCTTCCGTGCGCCCTTGCCTGG
TCCGCCACGTGTCTACGTTGGTTCCCTACGAGTGTCACGTCTTTACTGGA
GCAAAGGGGCACAGGATTACGGTCCGTCGGAACGAAGTAGCGTTTTTCTC
CCACTGCTGGGATCTCCCGCCAGACCAGTGCCCCCCGCGACCGGACCTCC
TGGATGGGCCGCACCCGGACACGCCCGATCGAACGAAGCTCCAGCACATG
AAGGCATGCCTTGAGGAAGCCCCGTCGAGCGTTCAGTACGTGTGGGTCGA
CATGCTTTGTGTGCCGCTGGCGCAGTCAAAAAGGCGGAGGGCCTCCGGTC
GCTCGGTCCCGTACTTCGTGCAAAACTCGGGAAGGTTTTACATTTTGGCG
CCGGACGCCGCTGGCCTCCAACGCCATAAAAAACGCGCATGGTGCCGCCT
AGAGGCCCTCTGCGCCGCATGCCCCTACCGGCCTTGCCATGTCGAATCAG
CCTTTTCAGCTAAGCCGGCATGGAATTCGGCGTCGGCTCGCTTTGTGTAT
GACTCCGTCGATTGCTTCGTCACCACGTGGGATAAAGGCATCCGACATGA
GGCGCGGGTTAGTGGGAGCGACGAGTTCATAGCAGCAGGGTTCCTGGGCG
ATCCAGTGGCGGGTAAGCTGAGCGACCCGAAGGACCGCCAGGATATCGCG
GAGGCTACCCTCAGAGCGGTCAACGCGATGGAGTCGTCTGGCCGAATCGC
CCCGGACGTGGCCAAGCGCCTGCGGTTCTCCTCGAAGAAAGTTCTCTACG
GCTCCCAAGGTTGGGAGGGACGAGCTGCAGACGAAGAAGAATTGCGTTCT
CTT
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