mRNA_P-littoralis_Contig196.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig196.55.1
Unique NamemRNA_P-littoralis_Contig196.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig196.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig196contigP-littoralis_Contig196:224895..229047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2160
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_000680.1
Cds size2160
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig196.55.1prot_P-littoralis_Contig196.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig196 224895..229047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789940.4716253-CDS-P-littoralis_Contig196:224894..2250771680789940.4716253-CDS-P-littoralis_Contig196:224894..225077Pylaiella littoralis U1_48CDSP-littoralis_Contig196 224895..225077 -
1680789940.482672-CDS-P-littoralis_Contig196:225122..2258911680789940.482672-CDS-P-littoralis_Contig196:225122..225891Pylaiella littoralis U1_48CDSP-littoralis_Contig196 225123..225891 -
1680789940.4910283-CDS-P-littoralis_Contig196:225957..2267361680789940.4910283-CDS-P-littoralis_Contig196:225957..226736Pylaiella littoralis U1_48CDSP-littoralis_Contig196 225958..226736 -
1680789940.5028749-CDS-P-littoralis_Contig196:226968..2270251680789940.5028749-CDS-P-littoralis_Contig196:226968..227025Pylaiella littoralis U1_48CDSP-littoralis_Contig196 226969..227025 -
1680789940.5121107-CDS-P-littoralis_Contig196:227249..2273581680789940.5121107-CDS-P-littoralis_Contig196:227249..227358Pylaiella littoralis U1_48CDSP-littoralis_Contig196 227250..227358 -
1680789940.522075-CDS-P-littoralis_Contig196:228784..2290471680789940.522075-CDS-P-littoralis_Contig196:228784..229047Pylaiella littoralis U1_48CDSP-littoralis_Contig196 228785..229047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig196.55.1

>prot_P-littoralis_Contig196.55.1 ID=prot_P-littoralis_Contig196.55.1|Name=mRNA_P-littoralis_Contig196.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=720bp
MLNSRKGNLSCFQWEVQRFQQSHREKMAAVTPQTNNRPSQPQRQRRKTGL
RKRETTRATLAEVDVKRMNGFLVEKLVHIHRIGGFQRRFLNEFQDVKAAL
QFGKTNVGVSRAAHERRQAFTTTARQKNQELLRRENAKLFTRLASSKRGS
IDFNKFEADFAKSREHRRVAQCNRTVGHTSVFSAVKARAPCSGADSTLCG
PAPPVKNSPTTRDMRSQQLRKRASPAGLSSDSLPIPGVQNPLSSATNHGG
ILIPSDVSPRRPHTADRCRQSTKRDRPRTALGLRRGSKHHDLFDARAAGP
GWGTVVEKCDGFAAAPRRSGMAGARRPKRPEPKDHTGCRKCQAADSNGDN
DDSDDHGHTVSTGGGSADFQTGKEEGGSGGGRLWFLGRTLLAEAKVLIGG
SKTRGGGGGRAGRGGGTKVSLRFLSLDGLIRQRDRVRKTLRGFVVEASLI
PPCQNSPSGGSAVEDAGEAGSSGSSRRGSSSVAVSTVQEYLQNFAASAAG
DRLGPSSALTPFRDAHPLDECGNFPEINELLGQVGQRDLYQTLLGSCRVV
TSHDRWRKINVQLLRVNADGGGVSTYPAVPPGIGVHGPKPRHDHESTAKR
GNHIAPSNGTQVGAGRSTGSPTAAKGNVGGAITSREGGDGRDVLNIGGTC
ASNTNNGDGKNTSIVVRVPLAPSRPNDSPKAGSEEGLESGNEEQEDEDGD
EDDDNDDNEDEDGNEDESD*
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mRNA from alignment at P-littoralis_Contig196:224895..229047-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig196.55.1 ID=mRNA_P-littoralis_Contig196.55.1|Name=mRNA_P-littoralis_Contig196.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4153bp|location=Sequence derived from alignment at P-littoralis_Contig196:224895..229047- (Pylaiella littoralis U1_48)
ATGCTCAACTCTAGGAAAGGAAACCTTTCGTGTTTCCAATGGGAAGTCCA
ACGCTTTCAGCAAAGTCACCGGGAGAAGATGGCCGCCGTAACTCCACAGA
CCAACAACAGACCAAGCCAACCGCAGCGGCAGCGCCGGAAGACTGGATTG
CGCAAAAGAGAGACCACAAGGGCAACGCTCGCGGAAGTGGATGTCAAACG
GATGAATGGTTTCCTCGTGGAGAAACTGGTACATATTCATCGCATTGGAG
GGTTCCAGCGAAGGTACGAACGCTGTGTTGGAGTCAGGGTCATGCTCGCA
ACGATTTTTTACCCAAAACTTTTAAACTTATGGCACGGTGTACGAGTTTA
CTGGATGGTTCCAAATACGAAGTATATGCTGTCGATCCTCTCCGTCATCC
TTATTATTGCTCGCTTCATCAGTTGGTTTTACAGCGGCAGCAACAAGCAT
GCCCCCGCTACTCTGCTGCATGGGGCTTACCGCATGAGCGTCCGCTACCG
TCGCACATCGGTCATATTGCCCTGTAAGCTGCGAACCTCGCACGTGTCAA
AGCAAGCCCTTGACTACTTGGTTTAATCATACGATATGCAACTTTGTTGT
GTGGCCAAGGTACGCGGTACCCTTCTGCAATAAAATCCCCCGCTACTGCT
GTTGCATGGGGCTTACTGTGTAAAGGTCCTCTACCGTCGCCTATCTATCA
TGTTGCCTGTAAGCTGCGAGTTTCGCATGTCTCAAAACAGAACTTTGTAC
TACTTGAAGTTCTTAAACAAGATGCAACCTTTGTTGTGTGGCCAAGATTC
CCTGTATCCTCCTGAAACAAAATCACAGCAGCTGCATAAATACAGAAAGT
CAGGAACAGAAAGACTTGTAATGCACACGAGTTGTTGTTGTTGATTCTCA
CATTAGCCCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACA
TTTCGTGCTAGAAGGAAAAAAAGAAAAATAAATAATGGACTATGATCACC
CACAGTCAAATGAGATAGGGTACCGTTGGGGTACCATCTGTGGTGCCCAA
AGTACAAACAAAATACAGAAAAAAGAACAAGTTCGAAAGAAAAACAAAAA
TTGGAAACAGTACAAACAAAAAAGAAAAAACAAGACAAACCTCAACCATA
ACCATACACTTCGAAGTACTTCGTACATCGAACCAGGGCCCAGGGCCATG
ACAGACCAAGGCAAAGGCAAACCAGGGCGCATGGTCCAGTAACTACATGA
TCAACAGACGAAAGACAAAATAAAAAAGAAGATACCGGGGGGGCACAAAG
ACTGAGGGAGGGCACTCGTGCACAAACACGACAAACAGGCCGCCAAACAA
AGAGGAAGCAGGGGAACGAAAAGGGAAAGAAAAGAAGAGACAAAGAGGAA
CACAATACATACATGGAGAGTGCAGAGGGGAGACCGGAAGTACCGGCAGT
GGGGGGGGGGGGTGATGATAAAAGTAAAATAAAAGGCATGCAATCAATCG
CAAACATGTCTTGCCACGAGGTCTGCCTGTTCACGCTTGCTCTCCTCAGT
CGCACTTATGCCTCCTGCTGCTGGCACCACCGAGTATGATATCATAGATA
TCAGACAAGTCCGTGAACAAGAAATTTCATGTATAAAGTTGTGTTGAGTA
ACAAGTGCCGAATGTTCGCTGTGCATCTTCTGAGCCTAGGTTCTTAAATG
AGTTCCAAGATGTCAAGGCAGCGTTGCAGTTCGGGAAAACCAATGTGGGG
GTCTCCCGGGCGGCCCATGAACGCAGGCAAGCATTTACAACAACTGCAGT
ACAAGTATGTGGAGGCATGATCGCTTTGCAAGGCTTTGGTCGAAATTGCT
CTGTCTACAGCAGACGACAGGTACACACAAATACACAACAACCGTTGCTC
ATTCTTAGCACGCACAAGTGCGGTTCGCACAGCATCTCCACTACTGTAGG
CTACTGGGCTACGAGTAAAGTTCTGCTCAAAATGCTACCTCACGCGTTGT
TAAATGCCACAGATTAATTCAGAGGCAGAAAAACCAAGAACTCCTTCGAA
GGGAGAATGCCAAGCTTTTCACGCGGTTGGTGAGTTTCACTACACGCTTA
TCTTCGGCATTTCAGCTTTCTGCACCATAAACCGTCCAAAACAAGCATTT
TTTTGCGCGTAGCCGAGTTAAAACCCCGGATCCGTGATGAAGACATGGAT
CCAGAACCACCTGTGCTATCCTCACCCCCAGTCTACGGAAACTCGCAACA
AGCAACCATCCCGTGATCGAACAACTTCCACTGCGCTGGTGTGACCCACC
CCAAATTCCAGGCAAGCTCTAAACGCGGCAGCATAGACTTCAATAAATTT
GAGGCGGACTTTGCCAAGAGCCGCGAGCACCGTCGCGTAGCACAGTGCAA
CCGCACGGTGGGACACACGTCGGTATTCTCGGCTGTCAAGGCTCGTGCGC
CTTGCTCTGGGGCCGACAGCACACTGTGCGGTCCAGCACCACCCGTCAAA
AACAGTCCTACAACAAGGGACATGAGATCTCAGCAGCTCCGGAAACGGGC
ATCCCCCGCGGGGCTGAGCTCAGATTCTTTGCCGATACCAGGTGTACAGA
ATCCTCTGAGCAGCGCAACTAACCACGGTGGAATCTTGATTCCATCTGAT
GTATCTCCGCGCAGGCCTCACACGGCCGACCGATGTAGACAGTCAACAAA
AAGGGATCGCCCCCGTACTGCTCTGGGTCTGCGGCGGGGCAGCAAACACC
ACGACCTCTTCGACGCTCGTGCTGCAGGTCCCGGGTGGGGAACCGTTGTT
GAGAAATGTGATGGTTTTGCTGCTGCCCCCCGACGAAGCGGGATGGCTGG
GGCCCGGCGACCGAAGAGGCCCGAACCAAAAGATCACACGGGGTGCCGAA
AGTGTCAAGCAGCGGACAGTAACGGAGACAATGATGATAGTGATGATCAT
GGCCACACTGTGTCGACAGGAGGGGGTTCTGCAGATTTTCAAACGGGCAA
AGAAGAAGGGGGTAGTGGCGGTGGGCGCCTGTGGTTCCTTGGGCGGACCT
TGCTCGCGGAAGCAAAGGTTCTTATCGGTGGCTCAAAAACGTACGAAAAA
CAGAAAAGCGGCGGCAGCGGCGGCGGAGGAGGACGAGGAGGAGGACGAGG
AGGAAGACGAGGAGGAGGAGGAGGGCGAGCAGGACGAGGAGGTGGCACAA
AGGTGAGCCTGAGGTTCCTAAGCCTTGACGGGCTCATCAGGCAGCGCGAC
AGGGTTCGAAAGACACTCCGAGGCTTTGTGGTCGAGGCTTCCCTCATCCC
TCCTTGTCAAAATTCCCCCTCGGGTGGTTCCGCGGTGGAAGATGCCGGGG
AGGCGGGTAGCAGCGGCAGCAGCAGAAGGGGTTCTAGCTCTGTTGCAGTT
TCGACTGTTCAAGAATACTTGCAAAACTTTGCAGCAAGTGCAGCAGGCGA
CAGACTTGGGCCTTCGTCAGCTCTTACCCCGTTCCGTGATGCACACCCGT
TGGACGAGTGTGGAAATTTCCCTGAGATCAACGAACTGCTTGGGCAAGTC
GGCCAGCGTGACCTCTATCAAACCCTGCTAGGAAGTTGTCGCGTCGTGAC
CTCGCACGACCGCTGGAGAAAGATCAACGTGCAGCTTCTACGGGTAAACG
CTGATGGTGGGGGGGTGTCTACGTATCCCGCCGTGCCTCCAGGAATCGGC
GTACATGGTCCCAAACCTCGTCACGATCACGAGTCGACGGCGAAGCGGGG
GAATCACATCGCACCAAGCAACGGTACGCAGGTCGGCGCTGGAAGGTCAA
CAGGGTCGCCGACCGCTGCCAAAGGAAATGTTGGGGGTGCAATTACTTCC
CGGGAAGGAGGGGATGGCAGGGATGTTTTGAACATCGGCGGCACGTGTGC
CTCAAATACCAATAACGGCGATGGTGTGAGTGGTGGCCCTTCCGTCACCG
CTGGTCGAGAGGCCATCGAGAAAAATACGTCAATTGTCGTTCGGGTGCCC
CTCGCGCCGAGTCGTCCGAATGACTCTCCGAAGGCGGGGTCCGAAGAGGG
GTTAGAGAGTGGAAACGAAGAGCAGGAAGACGAAGACGGAGACGAAGATG
ATGACAACGACGACAACGAAGACGAAGATGGAAATGAAGATGAAAGTGAT
TAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig196:224895..229047-

>mRNA_P-littoralis_Contig196.55.1 ID=mRNA_P-littoralis_Contig196.55.1|Name=mRNA_P-littoralis_Contig196.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2160bp|location=Sequence derived from alignment at P-littoralis_Contig196:224895..229047- (Pylaiella littoralis U1_48)
ATGCTCAACTCTAGGAAAGGAAACCTTTCGTGTTTCCAATGGGAAGTCCA
ACGCTTTCAGCAAAGTCACCGGGAGAAGATGGCCGCCGTAACTCCACAGA
CCAACAACAGACCAAGCCAACCGCAGCGGCAGCGCCGGAAGACTGGATTG
CGCAAAAGAGAGACCACAAGGGCAACGCTCGCGGAAGTGGATGTCAAACG
GATGAATGGTTTCCTCGTGGAGAAACTGGTACATATTCATCGCATTGGAG
GGTTCCAGCGAAGGTTCTTAAATGAGTTCCAAGATGTCAAGGCAGCGTTG
CAGTTCGGGAAAACCAATGTGGGGGTCTCCCGGGCGGCCCATGAACGCAG
GCAAGCATTTACAACAACTGCAAGGCAGAAAAACCAAGAACTCCTTCGAA
GGGAGAATGCCAAGCTTTTCACGCGGTTGGCAAGCTCTAAACGCGGCAGC
ATAGACTTCAATAAATTTGAGGCGGACTTTGCCAAGAGCCGCGAGCACCG
TCGCGTAGCACAGTGCAACCGCACGGTGGGACACACGTCGGTATTCTCGG
CTGTCAAGGCTCGTGCGCCTTGCTCTGGGGCCGACAGCACACTGTGCGGT
CCAGCACCACCCGTCAAAAACAGTCCTACAACAAGGGACATGAGATCTCA
GCAGCTCCGGAAACGGGCATCCCCCGCGGGGCTGAGCTCAGATTCTTTGC
CGATACCAGGTGTACAGAATCCTCTGAGCAGCGCAACTAACCACGGTGGA
ATCTTGATTCCATCTGATGTATCTCCGCGCAGGCCTCACACGGCCGACCG
ATGTAGACAGTCAACAAAAAGGGATCGCCCCCGTACTGCTCTGGGTCTGC
GGCGGGGCAGCAAACACCACGACCTCTTCGACGCTCGTGCTGCAGGTCCC
GGGTGGGGAACCGTTGTTGAGAAATGTGATGGTTTTGCTGCTGCCCCCCG
ACGAAGCGGGATGGCTGGGGCCCGGCGACCGAAGAGGCCCGAACCAAAAG
ATCACACGGGGTGCCGAAAGTGTCAAGCAGCGGACAGTAACGGAGACAAT
GATGATAGTGATGATCATGGCCACACTGTGTCGACAGGAGGGGGTTCTGC
AGATTTTCAAACGGGCAAAGAAGAAGGGGGTAGTGGCGGTGGGCGCCTGT
GGTTCCTTGGGCGGACCTTGCTCGCGGAAGCAAAGGTTCTTATCGGTGGC
TCAAAAACACGAGGAGGAGGAGGAGGGCGAGCAGGACGAGGAGGTGGCAC
AAAGGTGAGCCTGAGGTTCCTAAGCCTTGACGGGCTCATCAGGCAGCGCG
ACAGGGTTCGAAAGACACTCCGAGGCTTTGTGGTCGAGGCTTCCCTCATC
CCTCCTTGTCAAAATTCCCCCTCGGGTGGTTCCGCGGTGGAAGATGCCGG
GGAGGCGGGTAGCAGCGGCAGCAGCAGAAGGGGTTCTAGCTCTGTTGCAG
TTTCGACTGTTCAAGAATACTTGCAAAACTTTGCAGCAAGTGCAGCAGGC
GACAGACTTGGGCCTTCGTCAGCTCTTACCCCGTTCCGTGATGCACACCC
GTTGGACGAGTGTGGAAATTTCCCTGAGATCAACGAACTGCTTGGGCAAG
TCGGCCAGCGTGACCTCTATCAAACCCTGCTAGGAAGTTGTCGCGTCGTG
ACCTCGCACGACCGCTGGAGAAAGATCAACGTGCAGCTTCTACGGGTAAA
CGCTGATGGTGGGGGGGTGTCTACGTATCCCGCCGTGCCTCCAGGAATCG
GCGTACATGGTCCCAAACCTCGTCACGATCACGAGTCGACGGCGAAGCGG
GGGAATCACATCGCACCAAGCAACGGTACGCAGGTCGGCGCTGGAAGGTC
AACAGGGTCGCCGACCGCTGCCAAAGGAAATGTTGGGGGTGCAATTACTT
CCCGGGAAGGAGGGGATGGCAGGGATGTTTTGAACATCGGCGGCACGTGT
GCCTCAAATACCAATAACGGCGATGGTAAAAATACGTCAATTGTCGTTCG
GGTGCCCCTCGCGCCGAGTCGTCCGAATGACTCTCCGAAGGCGGGGTCCG
AAGAGGGGTTAGAGAGTGGAAACGAAGAGCAGGAAGACGAAGACGGAGAC
GAAGATGATGACAACGACGACAACGAAGACGAAGATGGAAATGAAGATGA
AAGTGATTAG
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