mRNA_P-littoralis_Contig196.28.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig196.28.1 vs. uniprot
Match: D7FPJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPJ1_ECTSI) HSP 1 Score: 479 bits (1232), Expect = 7.720e-166 Identity = 241/292 (82.53%), Postives = 261/292 (89.38%), Query Frame = 2
Query: 587 SVGSSATFATAGASSAGEEGITFVTTDAAVRRNADPGLVAFVTGANRGIGLEVTRQLLAKTEGTVVAACRDPSSATDLHALEKTAGTDNRLDVVKMDIEDQASVEAAAEHVKSEYRRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALTPFLESPAKRGDAGARPPSVVINFSARVGSIGDNQLGGWHSYRMSKSALNMATKGISVELRRRRVWAFSYHPGTTDTGLSEPFQANVRPEKLFTPEYTVSQVLGIVDSMTEELSGGFFAFDGSRI 1462
S GS+ ATA A + FV T+AA RRNADPG VAFVTGANRGIGLEVTRQLL + +GTVVAACRDPSSA DL AL + AG + RLD+VKMDIEDQ S+E AAEHV+S Y RVDLLFNVAGVLGDGKNTPGPERS+RAMDR+WLRHTLEVNTIGPMMLVAALTP LESPAK+GD GA+PPSVV+NFSARVGSIGDN LGGWHSYRMSKSALNMATKGIS+ELRRRRVWAFSYHPGTTDTGLSEPFQANV+PEKLFTP+YTVSQVLGIVDSMTE+LSGGF+AFDGSRI
Sbjct: 2 STGSNPAMATAAAGEPSGGVVKFVKTEAAARRNADPGSVAFVTGANRGIGLEVTRQLLERAKGTVVAACRDPSSAADLRALGRIAGNEKRLDMVKMDIEDQTSLETAAEHVRSTYGRVDLLFNVAGVLGDGKNTPGPERSVRAMDRDWLRHTLEVNTIGPMMLVAALTPLLESPAKKGDDGAKPPSVVVNFSARVGSIGDNGLGGWHSYRMSKSALNMATKGISIELRRRRVWAFSYHPGTTDTGLSEPFQANVKPEKLFTPDYTVSQVLGIVDSMTEDLSGGFYAFDGSRI 293
BLAST of mRNA_P-littoralis_Contig196.28.1 vs. uniprot
Match: A0A836C8A3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8A3_9STRA) HSP 1 Score: 309 bits (791), Expect = 3.490e-99 Identity = 150/262 (57.25%), Postives = 203/262 (77.48%), Query Frame = 2
Query: 674 VRRNADPGLVAFVTGANRGIGLEVTRQLLAKTEGTVVAACRDPSSATDLHALEKTAGTDNRLDVVKMDIEDQASVEAAAEHVKSEYR-RVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALTPFLESPAKRGDAGARPPSVVINFSARVGSIGDNQLGGWHSYRMSKSALNMATKGISVELRRRRVWAFSYHPGTTDTGLSEPFQANVRPEKLFTPEYTVSQVLGIVDSMTEELSGGFFAFDGS 1456
+ RNAD G V +T A+RG+GLE+ +QL ++T+G V+A+CR PS A +L AL ++ R+ V+++D+ DQASV+AAA HV + + R+D LFNVAG+LGDG+ TPGPERSL A+ R+WLRH++EVN IGP+ML A+ P L + G A+ PSVV+NFSARVGSI DN+LGGWHSYRMSKSALN ATK +++EL+R+ WAF+YHPGTTDT LS PFQANV+PEKLFTP +TV ++L + D+M ++ +GGF+ + G+
Sbjct: 30 LERNADTGAVFLLTAASRGLGLELAKQLASRTQGHVIASCRQPSKALELQALAQSHP--GRMTVLELDVTDQASVDAAAAHVAALHNGRLDALFNVAGLLGDGRATPGPERSLGAIQRDWLRHSMEVNVIGPVMLAQAMAPHLRT---TGQGRAKTPSVVVNFSARVGSISDNRLGGWHSYRMSKSALNQATKCMALELKRQGTWAFAYHPGTTDTDLSRPFQANVKPEKLFTPAFTVGRMLDLCDNMDQQHTGGFYDYSGT 286
BLAST of mRNA_P-littoralis_Contig196.28.1 vs. uniprot
Match: A0A7S2UED2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UED2_9STRA) HSP 1 Score: 281 bits (720), Expect = 6.170e-88 Identity = 139/271 (51.29%), Postives = 193/271 (71.22%), Query Frame = 2
Query: 671 AVRRNADPGLVAFVTGANRGIGLEVTRQLLAKTEGTVVAACRDPSSATDLHA-LEKTAGTDN----RLDVVKMDIEDQASVEAAAEHVKSEYRRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALTPFLESPAKRGDAGARPPSVVINFSARVGSIGDNQLGGWHSYRMSKSALNMATKGISVELRRRRVWAFSYHPGTTDTGLSEPFQANVRPEKLFTPEYTVSQVLGIVDSMTEELSGGFFAFDGSRIEF 1468
A++RN DP V VTGA+RGIGL+ + L+ +TEG +VA CR P +A LH LE + TD+ R++V+K+DIEDQ S++ + +++ Y RVD+L NVAG+LGDG +TPGPERSL +DR+W+ ++ VN IGP+ML AL+P + SP +RG R +++ N SARVGSI DN LGGW+SYR SK+ALN AT+ +S EL+R+ W + HPGTTDT LS+PFQ NV+ E+LF E+TV ++L ++DSM E+ SGG + + G I F
Sbjct: 62 AMKRNQDPNAVHVVTGASRGIGLQFVKSLIDRTEGKIVACCRSPENAHGLHTFLETMSLTDSLDRDRIEVLKLDIEDQTSIDELSNSIRNSYNRVDVLLNVAGLLGDGTSTPGPERSLAKLDRDWIEKSMAVNVIGPVMLSQALSPLMASP-QRGKEDKRATTLIANLSARVGSISDNGLGGWYSYRFSKAALNQATRTMSHELKRKGTWTIALHPGTTDTDLSKPFQRNVQAERLFPVEFTVEKLLDVMDSMEEQNSGGLYDWAGKAIPF 331
BLAST of mRNA_P-littoralis_Contig196.28.1 vs. uniprot
Match: A0A7S2YRX8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YRX8_9STRA) HSP 1 Score: 281 bits (720), Expect = 3.230e-87 Identity = 142/273 (52.01%), Postives = 193/273 (70.70%), Query Frame = 2
Query: 674 VRRNADPGLVAFVTGANRGIGLEVTRQLLAKTEGTVVAACRDPSSATDLHALEKTAGTDNRLDVVKMDIEDQASVEAAAEHVKSEYRRVDLLFNVAGVLGDG-KNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALTPFLESPAKR-----GDAG--ARPPSVVINFSARVGSIGDNQLGGWHSYRMSKSALNMATKGISVELRRRRVWAFSYHPGTTDTGLSEPFQANVRPEKLFTPEYTVSQVLGIVDSMTEELSGGFFAFDGSRIEF 1468
V+RN DP V VTGA+RGIGL+ + LL +T+GT+VA CR PS+AT+L L ++ + R+D+V +D+E+Q+++E A ++ +Y RVD LFNVAG+LGDG K TPGPERS+ MDR WL T+ VN IGP+ML L+ + + KR GD RP +VV+N SARVGSI DN LGGW+SYRMSKSALN AT+ +++EL+R+ WA + HPGTT+T LS PFQANV+ LF E+TV Q+L +VD + ++ SGGF+ + G + F
Sbjct: 112 VKRNQDPRAVFVVTGASRGIGLQFVKSLLERTKGTIVACCRSPSAATELIELRESMSSSKRIDIVALDLEEQSTIEKAGSFLREKYDRVDGLFNVAGLLGDGGKTTPGPERSISKMDRGWLEKTMAVNVIGPVMLTKELSSMIMTRRKRQRSKEGDIADTERPIAVVVNLSARVGSIADNGLGGWYSYRMSKSALNQATRTMALELKRQSAWAVALHPGTTNTDLSRPFQANVKEGSLFPVEFTVGQLLDLVDRLEDKHSGGFYDWAGQSLSF 384
BLAST of mRNA_P-littoralis_Contig196.28.1 vs. uniprot
Match: A0A7S2F9C9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9C9_9STRA) HSP 1 Score: 272 bits (696), Expect = 8.930e-86 Identity = 135/232 (58.19%), Postives = 173/232 (74.57%), Query Frame = 2
Query: 785 AACRDPSSATDLHALEKTAGTDNRLDVVKMDIEDQASVEAAAEHVKSEYRRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALTPFLESP----AKRGDAGARPPSVVINFSARVGSIGDNQLGGWHSYRMSKSALNMATKGISVELRRRRVWAFSYHPGTTDTGLSEPFQANVRPEKLFTPEYTVSQVLGIVDSMTEELSGGFFAFDGSRIEF 1468
A CR P++ATDLHAL +T+ RL+V ++D+ DQASVEA A V +++R D+L NVAG+L D + PER+L+++DREW TLEVNT+GP+ML AL P L S AK RPPSVV N SARVGSIGDN +GGW+SYR+SK+ALNMATK +S+EL+R VW + HPGTTDTGLS+PFQ NV+PEKLFT ++TVSQ+LG+V+SM +G FFA+DG IE+
Sbjct: 1 AGCRSPAAATDLHALAETSS--GRLEVAQLDVGDQASVEAFAASVAEKHQRCDMLLNVAGILHDEAHPAAPERALKSVDREWFSKTLEVNTVGPLMLAQALEPLLRSTGRGAAKTASGETRPPSVVANLSARVGSIGDNGMGGWYSYRISKAALNMATKNMSLELKRSGVWCVTLHPGTTDTGLSKPFQKNVKPEKLFTTKFTVSQLLGVVESMDVSHTGSFFAWDGQEIEW 230
BLAST of mRNA_P-littoralis_Contig196.28.1 vs. uniprot
Match: A0A7S3L7K7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L7K7_9STRA) HSP 1 Score: 274 bits (700), Expect = 1.010e-84 Identity = 134/269 (49.81%), Postives = 184/269 (68.40%), Query Frame = 2
Query: 677 RRNADPGLVAFVTGANRGIGLEVTRQLLAKTEGTVVAACRDPSSATDLHALEKTAGTDNRLDVVKMDIEDQASVEAAAEHVKSEYRRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALTPFL---ESPAKRGDAGA--RPPSVVINFSARVGSIGDNQLGGWHSYRMSKSALNMATKGISVELRRRRVWAFSYHPGTTDTGLSEPFQANVRPEKLFTPEYTVSQVLGIVDSMTEELSGGFFAFDGSRIEF 1468
+RN DP V VTGA+RGIGL+ + L KT+G +VA CR P AT L+ T +R++V+ +D+E+Q+S+EA V++ Y RVD+L NVAG+LGD K TPGPERSL +DR+W +L +N IGP+M+ L P L P K D G RP +VV N SARVGSI DN++GGW+SYR+SK+ LN AT+ +++EL R+ VW + HPGTTDT LS+PFQANV+ E LF ++TV+Q+L ++DS+ E SGG + + G + F
Sbjct: 79 KRNQDPEAVFVVTGASRGIGLQFVKALTTKTQGKIVACCRKPEQATQLNEFIGTLPNPSRVEVIPLDLEEQSSIEAFGTRVRNTYNRVDILLNVAGLLGDSKTTPGPERSLARVDRKWFETSLAINLIGPVMVTQELVPLLGQRRRPRKDNDDGTKDRPAAVVANLSARVGSISDNRIGGWYSYRISKAGLNQATRTMALELGRQSVWCVALHPGTTDTDLSKPFQANVKKESLFPVDFTVNQLLSVIDSVHAEHSGGLYDWAGKSVSF 347
BLAST of mRNA_P-littoralis_Contig196.28.1 vs. uniprot
Match: A0A448YYN6_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYN6_9STRA) HSP 1 Score: 274 bits (700), Expect = 2.050e-84 Identity = 138/276 (50.00%), Postives = 183/276 (66.30%), Query Frame = 2
Query: 680 RNADPGLVAFVTGANRGIGLEVTRQLLAKTEGTVVAACRDPSSATDLHALEKTAG--TDNRLDVVKMDIEDQASVEAAAEHVKSEYRRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALTPFLESPAKRGDAGA-----------RPPSVVINFSARVGSIGDNQLGGWHSYRMSKSALNMATKGISVELRRRRVWAFSYHPGTTDTGLSEPFQANVRPEKLFTPEYTVSQVLGIVDSMTEELSGGFFAFDGSRIEF 1468
RN+DP V V GA+RGIGL+ +LL+ T+G V+A CR P A L L T + NR++V+K+D+E+Q S+E +A +K +Y RVDLL NVAG+LGDGKNTPGPERS+ ++REW+ T +VN IGP+ML L P + + G A R VV N SARVGSI DN LGGW+SYRMSKSALN AT+ ++ EL+R+ VW + HPGTTDT LS+PFQ NV+ ++LF E+TV ++ ++DSM E SGG + + G I F
Sbjct: 95 RNSDPDAVFLVNGASRGIGLQFVSKLLSDTKGRVIAGCRSPDDAPKLQDLLSTLDKKSRNRVEVIKLDVENQDSIELSAAEIKVQYGRVDLLLNVAGILGDGKNTPGPERSVAKIEREWMEKTFQVNVIGPVMLAKELAPLMTQARRTGRRKADSSDETLSEKQRAVGVVANLSARVGSISDNGLGGWYSYRMSKSALNQATRTLANELKRKSVWCIALHPGTTDTDLSKPFQKNVQKDRLFPVEFTVDSLMNVIDSMEEHNSGGLYDWAGKAIPF 370
BLAST of mRNA_P-littoralis_Contig196.28.1 vs. uniprot
Match: A0A7S2HD28_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HD28_9STRA) HSP 1 Score: 268 bits (686), Expect = 2.240e-82 Identity = 131/273 (47.99%), Postives = 184/273 (67.40%), Query Frame = 2
Query: 677 RRNADPGLVAFVTGANRGIGLEVTRQLLAKTEGTVVAACRDPSSATDLHA-LEKTAGTDNRLDVVKMDIEDQASVEAAAEHVKSEYRRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALTPFLESPAKRGDAGA--------RPPSVVINFSARVGSIGDNQLGGWHSYRMSKSALNMATKGISVELRRRRVWAFSYHPGTTDTGLSEPFQANVRPEKLFTPEYTVSQVLGIVDSMTEELSGGFFAFDGSRIEF 1468
+RN DP V V G++RGIGL+ + L+ +++GT++A CR P SA L+ L + R+ +++D+EDQAS++AAAE +K+ Y RVD LFNVAG+LGDGK+ PGPERSL +DR+W+ T+ VN IGP+ML AL P + S R SV++N SARVGSI DN+LGGW+SYR SKSALN AT+ ++ EL+R+ W + HPGTT+T LS+PFQ NV+ +LF E+TV ++L +VD M + SGG + + G+ + F
Sbjct: 94 KRNGDPNAVFVVNGSSRGIGLQFVKSLVDRSQGTILACCRSPDSADKLNEFLSSSPQASQRVKTIQLDVEDQASIDAAAEEIKTSYNRVDCLFNVAGILGDGKSDPGPERSLSKLDRDWVEKTMAVNVIGPVMLSQALAPMMISKXXXXXXXXXXXXXXXXRAQSVIVNLSARVGSISDNELGGWYSYRFSKSALNQATRTMAHELKRQGTWTVALHPGTTNTDLSKPFQRNVQEGRLFPVEFTVGRLLDVVDGMEDRHSGGLYDWSGTALPF 366
BLAST of mRNA_P-littoralis_Contig196.28.1 vs. uniprot
Match: A0A7S4MLR2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MLR2_9STRA) HSP 1 Score: 261 bits (668), Expect = 1.380e-79 Identity = 137/285 (48.07%), Postives = 188/285 (65.96%), Query Frame = 2
Query: 665 DAAVRRNADPGLVAFVTGANRGIGLEVTRQLLAKTEGTVVAACRDPSSATDLHALEKTAGTDNR--LDVVKMDIEDQASVEAAAEHVKSEYRRVDLLFNVAGVLGDG-KNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALTPFLESPAKRG---------DAGA-----RPPSVVINFSARVGSIGDNQLGGWHSYRMSKSALNMATKGISVELRRRRVWAFSYHPGTTDTGLSEPFQANVRPEKLFTPEYTVSQVLGIVDSMTEELSGGFFAFDGSRIEF 1468
D A +RNADP V +TGANRGIGL+ + +L ++ G + A CR P A L A++ + + R + +V++D+EDQ S+E AA+ +++EY RVD L NVAG+LGDG ++TPGPERSL +DREW +L VN IGP+ML AL P + + RG D G R PS+V N SARVGSI DN+LGGW+SYR+SK+ALN AT+ ++ EL+R+ A + HPGTTDT LS PFQ NV +LF E+TV Q+L +D++ +E SGG + + G + F
Sbjct: 90 DEANQRNADPHAVFVITGANRGIGLQFVKAVLDRSRGRIAACCRSPRDAEALEAVKASLPAEERERIRLVRLDVEDQMSIEGAADEIRTEYGRVDALLNVAGILGDGGESTPGPERSLGKIDREWTAKSLAVNVIGPVMLAQALAPLMRTKGGRGQRRTRRKTSDEGEEKEEQRAPSIVANLSARVGSISDNELGGWYSYRLSKAALNQATRTMAHELKRQGTRAVALHPGTTDTDLSAPFQRNVAEGRLFPVEFTVRQLLDCIDNLDDEHSGGLYDWSGRALPF 374
BLAST of mRNA_P-littoralis_Contig196.28.1 vs. uniprot
Match: A0A7S3PXF5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXF5_9STRA) HSP 1 Score: 259 bits (661), Expect = 7.180e-79 Identity = 127/266 (47.74%), Postives = 180/266 (67.67%), Query Frame = 2
Query: 677 RRNADPGLVAFVTGANRGIGLEVTRQLLAKTEGTVVAACRDPSSATDLHALEKTAGTDN--RLDVVKMDIEDQASVEAAAEHVKSEYRRVDLLFNVAGVLGDGKNTPGPERSLRAMDREWLRHTLEVNTIGPMMLVAALTPFLESPAKRGDAGARPPSVVINFSARVGSIGDNQLGGWHSYRMSKSALNMATKGISVELRRRRVWAFSYHPGTTDTGLSEPFQANVRPEKLFTPEYTVSQVLGIVDSMTEELSGGFFAFDGSRIEF 1468
+RN D V VTGA+RGIGL++ + L +T+GT+VA CR P A LH+ K+ T+ R+ + +D+E+Q ++E + ++ ++RVD+L+NVAG+LGDGKNTPGPERSLR++DR W ++ VN IGP+ L L P + S K+ D G SV++N SARVGSI DN LGGW SYR SK+ALN A + ++ EL+R+ HPGTTDTGLS+PFQ NV+ E+LF E+T S+++ VD M E +GG + + G+ + F
Sbjct: 87 KRNNDADAVFVVTGASRGIGLQILKDLATRTKGTIVACCRAPKEADHLHSFIKSLPTNESRRILLKSLDLEEQETIETLGKEIEDSHKRVDVLYNVAGILGDGKNTPGPERSLRSLDRNWAMKSMNVNYIGPVSLSQVLAPMMRSTLKKDDRGK---SVIVNLSARVGSISDNGLGGWISYRSSKAALNQANRTMAHELKRQGTLCICLHPGTTDTGLSKPFQGNVKKERLFPVEFTASRMIDAVDCMDELNTGGLYDWSGTALPF 349 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig196.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig196.28.1 >prot_P-littoralis_Contig196.28.1 ID=prot_P-littoralis_Contig196.28.1|Name=mRNA_P-littoralis_Contig196.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=398bp MVFSALLSIASRASGGPWRVAIAQGMPFGATTGVVPRTFSAATSWAIYHAback to top mRNA from alignment at P-littoralis_Contig196:148361..152043+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig196.28.1 ID=mRNA_P-littoralis_Contig196.28.1|Name=mRNA_P-littoralis_Contig196.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3683bp|location=Sequence derived from alignment at P-littoralis_Contig196:148361..152043+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig196:148361..152043+ >mRNA_P-littoralis_Contig196.28.1 ID=mRNA_P-littoralis_Contig196.28.1|Name=mRNA_P-littoralis_Contig196.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1194bp|location=Sequence derived from alignment at P-littoralis_Contig196:148361..152043+ (Pylaiella littoralis U1_48)back to top |