mRNA_P-littoralis_Contig196.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig196.27.1
Unique NamemRNA_P-littoralis_Contig196.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig196.27.1 vs. uniprot
Match: D7FPJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ2_ECTSI)

HSP 1 Score: 919 bits (2375), Expect = 0.000e+0
Identity = 510/624 (81.73%), Postives = 536/624 (85.90%), Query Frame = 1
Query:    1 MDGPTLITQPPGYPEERPETDDMDGMLEHLADELEGKQLLEKPRVSKKVMVFALKEQNRIIGQLRREANANFMLLDDRSRRTQELVQKLVGKINNQETQLQKAEVTITMMQGEMEHMRSKIEEALKLIDMAKKLEEKIVSVQHRVEKHTATLKEHETRFGEIDRLAGRVSIVEEALAKIPGDNVFVTTDHMGEPMPLNTVVQNLQVTLKEYNVKIHEQSKARLFYNLRQQSEVLAKAEGQLAEGVRVNRENIEEMQASLTQYARNTKKLASVKLAKNDDIDLAEIRRGQTSIAEQLDVIQQELLAKIDKSYVDEHVEARYEEIINHLHKALSSTEQDEQDFKKRANSLQDIIEQLSANKADRRELLELKQFMVSLNGQERRNSTERRRSSAAFVGADGGEGNPLTGPITRDEVFNLLEEKADRKDLEKRMAAIVTRINNAVIRRGSGGTSSALAPGVTPTGPAGPSGYGGTPAKRGAGNGGGGMVQSNNDIDAWEAWESDPEGALAMSKQLTDGFGRAVKPDGMAVGTCLSCKAPIVHPDKMDLFPGVSRGGGFQLWAPSGKGPPLRAPPGDTLPELDATDGRHIIGKDGNLYLAQTNGP---AAAVETRPGGPAPSRPKTADG 1863
            MDGPTLITQPPGYPEERPETDDMDGML+H+ADELEGKQ+LEKPRVSKKVMVFALKEQNRIIGQLRREANANFMLLDDRSRRTQ+LVQKLVGKIN QETQLQKAE TIT MQGEM+H    IEEALKLID+AKKLEEKIVSVQHR+E HTATLK HE RFGEIDRLAGRVSI+EEAL KI GD+V+VTTDHMGEPMPLNTVVQNLQ+TL EYNVKIHEQSKA     LRQQSEVLAKAEGQLAEG+RVNRENIEEMQ               VKLAKNDDIDL EIRRGQTSIAEQLDVIQQELLAKIDKSYVDEHVEARYEEIINHLHKALSSTEQDEQ+FKKRAN+LQ++IEQLSANKADRRELLELKQFMVSLNGQERRNSTERRRSSAA VG   GEGNPLTGPITRDEVFNLLEEKADRKDLEKRMAAIVTR+NNAVIRRGSGG+++    G TPTG                                    E DPEGALA+SKQLTDGFGRAVKPDGMAVGTCLSCKAPIVHPDKMDLFPGVSRGGGFQLW+PSGKGPPLRAPPGDTLPELD TDGRHIIGKDGNLYLAQT+GP   A   +TRPGGP P+RPKTA+G
Sbjct:    1 MDGPTLITQPPGYPEERPETDDMDGMLDHIADELEGKQMLEKPRVSKKVMVFALKEQNRIIGQLRREANANFMLLDDRSRRTQDLVQKLVGKINTQETQLQKAEGTITAMQGEMQHXXXXIEEALKLIDIAKKLEEKIVSVQHRLETHTATLKAHEARFGEIDRLAGRVSILEEALTKISGDDVYVTTDHMGEPMPLNTVVQNLQITLTEYNVKIHEQSKA-----LRQQSEVLAKAEGQLAEGIRVNRENIEEMQ---------------VKLAKNDDIDLGEIRRGQTSIAEQLDVIQQELLAKIDKSYVDEHVEARYEEIINHLHKALSSTEQDEQEFKKRANNLQNVIEQLSANKADRRELLELKQFMVSLNGQERRNSTERRRSSAASVGTGSGEGNPLTGPITRDEVFNLLEEKADRKDLEKRMAAIVTRVNNAVIRRGSGGSTAVQ--GATPTGXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPDPEGALALSKQLTDGFGRAVKPDGMAVGTCLSCKAPIVHPDKMDLFPGVSRGGGFQLWSPSGKGPPLRAPPGDTLPELDPTDGRHIIGKDGNLYLAQTSGPLTGAVPPDTRPGGPTPTRPKTAEG 601          
BLAST of mRNA_P-littoralis_Contig196.27.1 vs. uniprot
Match: A0A6H5KQW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQW7_9PHAE)

HSP 1 Score: 360 bits (925), Expect = 2.770e-118
Identity = 210/260 (80.77%), Postives = 218/260 (83.85%), Query Frame = 1
Query:  148 MVFALKEQNRIIGQLRREANANFMLLDDRSRRTQELVQKLVGKINNQETQLQKAEVTITMMQGEMEHMRSKIEEALKLIDMAKKLEEKIVSVQHRVEKHTATLKEHETRFGEIDRLAGRVSIVEEALAKIPGDNVFVTTDHMGEPMPLNTVVQNLQVTLKEYNVKIHEQSKARLFYNLRQQSEVLAKAEGQLAEGVRVNRENIEEMQASLTQYARNTKKLASVKLAKNDDIDLAEIRRGQTSIAEQLDVIQQELLAKIDK 927
            MVFALKEQNRII QLRREANANFMLLDDRSRRTQ+LVQKLVGKIN QETQLQKAE TIT MQGE       IEEALKLID+AKKLEEKIVSVQHR+E HTATLK HE RFGEIDRLAGRVSI+EEAL  I GD+V+VTTDHMGEPMPLN VVQ LQ+TL EYNVKIHEQSKA     LRQQSEVL KAEGQLAEG+RVNRENIEEMQ               VKLAKNDDIDL EIRRGQTSIAEQLDVIQQELLAKIDK
Sbjct:    1 MVFALKEQNRIIRQLRREANANFMLLDDRSRRTQDLVQKLVGKINTQETQLQKAEGTITAMQGEXXXXXXXIEEALKLIDIAKKLEEKIVSVQHRLETHTATLKAHEARFGEIDRLAGRVSILEEALTTISGDDVYVTTDHMGEPMPLNAVVQKLQITLTEYNVKIHEQSKA-----LRQQSEVLTKAEGQLAEGIRVNRENIEEMQ---------------VKLAKNDDIDLGEIRRGQTSIAEQLDVIQQELLAKIDK 240          
BLAST of mRNA_P-littoralis_Contig196.27.1 vs. uniprot
Match: A0A835ZAK5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK5_9STRA)

HSP 1 Score: 352 bits (902), Expect = 3.330e-109
Identity = 264/642 (41.12%), Postives = 350/642 (54.52%), Query Frame = 1
Query:   10 PTLITQPPGYPEERPETDDMDGMLEHLADELEGKQLLEKPRVSKKVMVFALKEQNRIIGQLRREANA-----------------------NFMLLDDRSRRTQELVQKLVGKINNQETQLQKAEVTITMMQGEMEHMRSKIEEALKLIDMAKKLEEKIVSVQHRVEKHTATLKEH-ETRFGEIDRLAGRVSIVEEALAKIPGDNVFVTTDHMGEPMPLNTVVQNLQVTLKEYNVKIHEQSKARLFYNLRQQSEVLAKA-------EGQLAEGVRVNRENIEEMQASLTQYARNTKKLASVKLAK-NDDIDLA-------------EIRRGQTSIAEQLDVIQQELLAKIDKSYVDEHVEARYEEIINHLHKALSSTEQDEQDFKKRANSLQDIIEQLSANKADRRELLELKQFMVSLNGQERRNSTERRRSSAAFVGADGGEGNPLTGPITRDEVFNLLEEKADRKDLEKRMAAIVTRINNAVIRRGSGGTSSALAPGVTPTGPAGPSGYGGTPAKRGAGNGGGGMVQSNNDIDAWEAWESDPEGALAMSKQLTDGFGRAVKPDGMAVGTCLSCKAPIVHPDKMDLFP-GVSRGGGFQLWA---PSGKGPPLRAPPGDTLPELDATDG-RHIIGKDGNLYLA 1785
            PTLITQPPGYPEERPET+DMDGML+HL  EL+GK +L KPRVSKK MV AL++Q  +I +L+ EA                         +F LL+ RSR+T ELV+ LV ++   E    +A      M+  + ++ +K+E+  ++  M    EE++ SV   VE   A +  H E     I  L  R + +E A A +PG  V V  D   E +PL  V++ L   + E  ++    +KA   +  + + + + +A                            L         +  V LA   +D+DL               +RR Q S+AE+LD +Q ELL K+DK Y+D  VE++YEEII HL +AL+S E DE DFK++  +LQD +E+LSA KA+RRELLELKQF+VSL       +   R        AD      L   +TRDEVF LLEEK  RKD+E+R+A I  R+  A + RG G                   G  GTPA+RGA         S    D   A+ES+PEGALA+ +QLTDG GR V   G A+GTCL+CKAPIVHPD+ DL+  G +RGGGFQLWA   P  KGPPLRA PGD LP LD T+G RH++G+DG+LYLA
Sbjct:    3 PTLITQPPGYPEERPETEDMDGMLDHLLQELQGKTVLVKPRVSKKTMVCALQQQADMIRKLKLEAARCVAAALPRNRKKAERVGHMKAALHFALLEHRSRKTAELVESLVSRLAAVENTTSQA----ADMEDALANLNNKLEDLSRIGAM----EERLTSVATAVEAQDARITGHVEQTEVAITGLDARTAALEAATAALPGQCVMVAPDDTSEALPLPDVIKRLDALVTECKLRGDASAKAVRMHAEQLEGKAMTQALTLPPXXXXXXXXXXXXXXXXXXXXXXXLXXRPAQAAVVVEVGLAAAREDLDLLLRRMDSDQGGGADAVRREQASLAERLDAVQGELLLKVDKGYLDLRVESKYEEIIAHLQRALTSAEDDEVDFKRQTRTLQDAVERLSAGKAERRELLELKQFVVSLG---EGGALGGRXXXXXXXXADA-----LAAGVTRDEVFTLLEEKVSRKDMERRLAQISQRV--AALARGRGXXXXXXXXXXXXX-----XGALGTPAQRGA--------PSATVDDLATAFESEPEGALAVIRQLTDGAGRPVSVAGPAIGTCLACKAPIVHPDRQDLYAAGGARGGGFQLWAAAAPPPKGPPLRAQPGDVLPGLDLTEGGRHVMGRDGHLYLA 613          
BLAST of mRNA_P-littoralis_Contig196.27.1 vs. uniprot
Match: A0A7S1XT03_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XT03_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.830e-21
Identity = 97/374 (25.94%), Postives = 185/374 (49.47%), Query Frame = 1
Query:   79 LEHLADELEGKQLLEKPRVSKKVMVFALKEQNRIIGQLRREANANFMLLDDRSRRTQELVQKLVGKINNQETQLQKAEVTITMMQGEMEHMRSKIEEALKLID-MAKKLEEKIVSVQHRV------------------EKHTATLKEHETRFGEIDRLAGRVSIVEEALAKIPGD------NVFVTTDH--MGEPMPLNTVVQNLQVTLKEYNVKIHEQSKARLFYNLRQQSEVLAKAEGQLAEGVRVNRENIEEMQASLTQYARNTKKLASVKLAKNDDIDLAEIRRGQTSIAEQLDVIQQELLAKIDKSYVDEHVEARYEEIINHLHKALSSTEQDEQDFKKRANSLQDIIEQLSANKADRRELLELKQFMV 1119
            L  L + L+G+ +LEKPRV ++V+V AL+E N I+  L+ + +                      KI+N E +    +  +  + G +E     I +    +D  A+ ++EK+++++  V                  E++  T    E    E D +  RV+ +E  L K+PG+       + V  +   +   + L  V++NL    +E N ++    K      LR  +E +  A+ +L + +R   + +  ++A   +                +++D+A++RR Q  I   ++ +Q++L+ KID+S VDE +EA+YEEII+HL  AL ST++DE +F++  ++LQ  +E L  +KA++++L E+++ +V
Sbjct:   14 LHGLTEALKGQTVLEKPRVKRRVLVQALREHNDILIDLQNQVSV------------------AKAKIDNLEYETSNTKKALGALTGVVEEHSEHIADLSSKMDGFAELVDEKVLALKTEVYDNFVTKVGLAEALKPFEEENERTRARFERNDKEADGVRARVATLEVNLEKLPGELRLGSHQIIVPPEENSINHEIELTEVIKNLHQHNEETNAELKAHKKL-----LRSHTEDIRVAKQELGDSIRETSDRLTIVEAWKKEQ---------------EEVDIADVRRNQEGIMGGIEALQRDLIEKIDRSDVDEKIEAKYEEIIDHLQTALQSTQEDEDEFRRMTSNLQTTVENLQNHKAEKKDLAEIRRQLV 349          
BLAST of mRNA_P-littoralis_Contig196.27.1 vs. uniprot
Match: A0A7R9YCT8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCT8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.190e-20
Identity = 106/375 (28.27%), Postives = 173/375 (46.13%), Query Frame = 1
Query:  832 DDIDLAEIRRGQTSIAEQLDVIQQELLAKIDKSYVDEHVEARYEEIINHLHKALSSTEQDEQDFKKRANSLQDIIEQLSANKADRRELLELKQFMVSLNGQERRNSTERRRSSAAFVGADGGEGNPLTGPITRDEVFNLLEEKADRKDLEKRMAAIVTRINNA---------VIRRGSGGTSSA----LAPGVTPTGPAG--------PSGYGGTPAKRGAGNGGGGMVQSNNDIDAWEAWESDPEGALAMSKQLTDGFGRAVKPDGMAVGTCLSCKAPIVHPDKMDLFPGVSRGGGFQLWA------------PSG---------KGPPLRAPPGDTLPELDA----TDGRHIIGKDGNLYLAQTNGPAAAVET 1818
            +++D++++RR Q +I E +  +Q +L+ KID++ VDE +EA+Y+EII+HL  AL ST +DE +F++   +L+  +E L   KADRRE++EL++ +V    Q                    G G  L G I+RDE+  LL++K D+++ + +M  +  R+++           +++  GG S+A    L    T + P G         +  G   A R A    G    +        A  SD    L+  + +T        P   +    L+   PIV+ +K  L P  + GGGFQL A            P G         +GPPLR+     L E++     +  R + G DG  Y  +   PA A ++
Sbjct:   23 EEMDISDVRRKQDAIIEGITALQHDLVEKIDRADVDEKIEAKYQEIIDHLQTALESTHEDEDEFRRMTATLKTTVENLQTLKADRREVVELRRQVVLQQAQ-----------------GGAGAGMSLAGGISRDELLMLLDDKMDKQEWDVQMEQLRQRLDSVNAEMGEIGYALKQMEGGKSNAKFARLGRRATISDPEGRAFVASSDQTWSGLAAALRNAAQSPGQSTANGTPFYPAAAMASD----LSKLRPIT-------VPGIASENAALATNVPIVNANKYGLNPRNAYGGGFQLNAHLLPPRAPHSPFPQGPDSHSPTYDRGPPLRSGNQQELREINVALPPSLKRLVKGTDGKFYRGELREPATASDS 369          
BLAST of mRNA_P-littoralis_Contig196.27.1 vs. uniprot
Match: A0A6U3R001_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3R001_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.050e-18
Identity = 100/335 (29.85%), Postives = 150/335 (44.78%), Query Frame = 1
Query:  889 DVIQQELLAKIDKSYVDEHVEARYEEIINHLHKALSSTEQDEQDFKKRANSLQDIIEQLSANKADRRELLELKQFMVSLNGQERRNSTERRRSSAAFVGADGGEGNP---LTGPITRDEVFNLLEEKADRKDLEKRMAAIVTRINNAVIRR----------GSGGTSSALAPGVTPTGPAGPSGYGGT--PAKRGAGNGG------------GGMVQSNNDIDAWEAWESDPEGALAMSKQLTDGFGRAVKPDGMAVGTCLSCKAPIVHPDKMDLFPGVSRGGGFQLWAPSGKG----PPLRAP-PGDTLPELDATDGRHIIGKDGNLYLAQTNG 1797
            D I  +LLAK D   VD  +E +YEEI+ HLHKALSS + DEQDFK    +L   +E+L  +KAD+ E+  L+  M                  +A + +  GEG P   L   +T+ ++ +LLE K +  D ++ +A +   + N V ++           SG        GV+ + P+ P+   G   P + GA + G            GG    N +  A +   S P       + LT G    ++P       CLSC API++ D+ ++ P  + GGGF  W+   +     PPL  P  G+T  +   +    I G DG  Y    NG
Sbjct:    2 DQIALDLLAKTDNKAVDLKIEHKYEEILEHLHKALSSADSDEQDFKAATEALNRAVEKLKTSKADKVEISNLRGAM------------------SAALQSQSGEGLPAEKLAELVTQKQLVSLLEGKLNIADHDRILADLQRTVGNVVAQQLAASEQQHPIKSGSALEGGEGGVSASDPSPPNNQAGECIPMEGGAESVGPLVDPPVPPVRVGGQTIYNQNCAAAKVKSSLP------MRPLTAGARNWLEP-----AVCLSCDAPILNADRSNMQPMQTLGGGFVYWSKPAEEKRSLPPLTRPNKGNTRGQQTTSANMQIEGVDGKYYSGDHNG 307          
BLAST of mRNA_P-littoralis_Contig196.27.1 vs. uniprot
Match: A0A7S4D7V4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7V4_HETAK)

HSP 1 Score: 86.7 bits (213), Expect = 5.890e-16
Identity = 63/184 (34.24%), Postives = 105/184 (57.07%), Query Frame = 1
Query:  571 MGEPMPLNTVVQNLQVTLKEYNVKIHEQSKARLFYNLRQQSEVLAKAEGQLAEGVRVNRENIEEMQASLTQYARNTKKLASVKLAKNDDIDLAEIRRGQTSIAEQLDVIQQELLAKIDKSYVDEHVEARYEEIINHLHKALSSTEQDEQDFKKRANSLQDIIEQLSANKADRRELLELKQFMVS 1122
            M   +PL  V++ L+  + E  + +  Q +++L  +    +E+  KA   +AE VR + E++E ++                K+   + +DL ++R+ Q +  E LD IQ+EL+ KID+  VDE VEA+Y EII+HL  AL ++E DE++FKK    L + +E L   KADRREL +L+  +++
Sbjct:    1 MAVEVPLTEVLRELEGLVAEQRL-LQAQQRSQLKLH---GAELAQKAPLLVAEDVRRHEEDLERIRK---------------KVFDQEVVDLMDVRKRQEAQTEALDAIQRELIQKIDRQAVDEKVEAKYAEIIDHLQGALKASEDDEEEFKKNTADLYNTVEALRKGKADRRELADLRSLLLA 165          
BLAST of mRNA_P-littoralis_Contig196.27.1 vs. uniprot
Match: A0A067D8D9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D8D9_SAPPC)

HSP 1 Score: 86.7 bits (213), Expect = 3.330e-14
Identity = 106/413 (25.67%), Postives = 193/413 (46.73%), Query Frame = 1
Query:   85 HLADELEGKQLLEKPRVSKKVMVFALKEQNRIIGQLRREANANFMLLDDR-------SRRTQELVQKLVGKINNQETQLQKAEVTITMMQGEMEHMRSKIEEALKLIDMAKKLEEKIVSVQHRVEKHTATLK------EHETRFGEIDRLAGRVSIVE-EALAKIPGDNVFVTTDHMGEPMPLNTVVQNLQVTLKEYNVKIHEQSKARLFYNLRQQSEVLAKAEGQLAEGVRVNRENIEEMQASLTQYARNTKKLASVKLAKNDDIDLAEIRRGQTSIAEQLDVIQQELLAKIDKSYVDEHVEARYEEIINHLHKALSSTEQDEQDFKKRANSLQDIIEQLSANKADRRELLELKQFMVSLNGQERRNSTERRRSSAAFVGADGGEGNPLTGPITRDEVFNLLEEKADRKDLE 1281
            +L++EL+G ++LE PRV KKV+V A++ Q   +    R  +  F  L DR       +R++Q+ ++K   K +  E  ++  ++ +  ++G++     +I+    L    K + +++  V   VE   A L       E++    +++ +A + S+V+ E         V +TTD          VV      L  +    HE +K                            RE+I  ++ +  ++AR +K +  +       +D        TS  E+   +Q+ LL K D+  VD  +E++YEEII  L KA+S+  +DE +FK+    LQD+++ LSA+KAD+++LLE+K+ +  L     R   E  R   AF+             + +++VF+ L+ KADR +++
Sbjct:   25 NLSEELQGVKILEHPRVQKKVLVKAIRMQTLAM----RCMSGEFDRLRDRIDVVEKEARQSQKQIEKANAKAHALEALVEAQKLRVGELEGKIVQQAKRIDLLQGLDSQIKVVRDEVRVVDLAVESQKAVLTQFVAKVENDVSSVKLEIVAAKESLVQLEEKVNEEXXEVVLTTD----------VVMYNNRPLTHWFELYHEDNK---------------------------RREDI--LRDTSDKFARQSKGIQDMMFEARKSLD------DNTSAVEE---VQRALLEKADRVKVDLIIESKYEEIIEQLQKAMSAINEDEDEFKRNCRDLQDLVQNLSASKADKKDLLEVKEQV--LYDSRVRQQVENLR---AFIDLK----------MNKEDVFSALKSKADRDEMQ 370          
BLAST of mRNA_P-littoralis_Contig196.27.1 vs. uniprot
Match: A0A485LHP3_9STRA (Aste57867_20714 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHP3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.400e-12
Identity = 100/423 (23.64%), Postives = 197/423 (46.57%), Query Frame = 1
Query:   85 HLADELEGKQLLEKPRVSKKVMVFALKEQNRIIGQLRREANANFMLLDDRSRRTQELVQKLVGKINNQETQLQKAEVTITMMQGEMEHMRSKIEEA-------LKLIDMAKKLEEKIVSVQHRVEKHTATLKEHETRFGE-IDRLAGRVSIVEEALAKIPGDNVFVTTDHMGEPMPLNTVVQNLQVTLKEYNVKIHEQSKARLFYNLRQQSEVLAKAEGQLAEGVRVNRENIEEMQASLTQYARNTKKLASVKLAKNDDIDLAEIRRGQTSIAEQLDVIQQELLAKIDKSYVDEHVEARYEEIINHLHKALSSTEQDEQDFKKRANSLQDIIEQLSANKADRRELLELKQFMVSLNGQERRNSTERRRSSAAFVGADGGEGNPLTGPITRDEVFNLLEEKADRKDLEKRMAAIVTRINNAVIR 1329
            +L++EL+G ++LE PRV KKV+V A++ Q   +    R     F +L DR       ++ +  +  + + QL+K    +  ++  ++    ++ E         K ID  + LE ++ +V+  ++     +      F   + ++   V+ V++ L     D++      M E   +  +  +        +V +HE    R F               Q AE    NR   E ++ +  ++AR ++ +  +         ++E R+        ++ +Q+ L+ K D+  VD  +E++YEEII  L KA+++  +DE +FK+    LQD+++ LS++KAD+++LLE+K+ +  L     R   E  R   AF+             + R++VF  L+ KAD+ +++  + A+   +N A +R
Sbjct:   25 NLSEELQGVKILEHPRVQKKVLVKAIRMQTIAM----RCMAGEFDVLRDR-------LEAVEREAKHGQKQLEKVNTKVLALEAALDGANKRVVELEQDLVKESKRIDAVEGLEGQLKTVRDEMKLMDQAMDAQRVEFSMFVAKVDHDVTSVKKTLDATK-DSLVALESKMEEEDDVKVLTTD--------DVLLHEMPLTRWFE--------------QYAED---NRRREEILKDTSDKFARQSRGIHDM---------MSETRKALDDNTSAVEEVQRALIEKADRVKVDLIIESKYEEIIEQLQKAMTAISEDEDEFKRNCRDLQDLVQNLSSSKADKKDLLEVKEQV--LYDSRVRQQVENLR---AFIDLK----------MNREDVFAALKSKADKDEMQILLKALSESMNAAAMR 386          
BLAST of mRNA_P-littoralis_Contig196.27.1 vs. uniprot
Match: D0NHC5_PHYIT (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=D0NHC5_PHYIT)

HSP 1 Score: 80.5 bits (197), Expect = 3.560e-12
Identity = 110/422 (26.07%), Postives = 203/422 (48.10%), Query Frame = 1
Query:   88 LADELEGKQLLEKPRVSKKVMVFALKEQNRIIGQLRREANANFMLLDDRSRRTQELVQKLVGKINNQETQLQKAEVTITMMQGEMEHMRSKIEEA----LKLIDMAKKLEEKIVSVQHRVEKHTATLKEHETRFGEIDRLAGRVSIVEEALAKIPGDNVFVTTDHMGEPMPLNTVVQNLQVTLKEYNVKIHE---QSKARLFYNLRQQSEVLAKAEGQLAEGVRVNRENIEEMQASLTQYARN-TKKLASVKLAKNDDIDLAEIRRGQTSIAEQLDVIQQELLAKIDKSYVDEHVEARYEEIINHLHKALSSTEQDEQDFKKRANSLQDIIEQLSANKADRRELLELKQFMVSLNGQERRNSTERRRSSAAFVGADGGEGNPLTGPITRDEVFNLLEEKADRKDLEKRMAAIVTRINNAVIR 1329
            L  ELEGK  LE+PRVSKKV+V AL+ Q   +             + D   R ++ + ++  +  N    +++    +  +QG++E M +K+ E      K  +  K+++E  V+VQ R  +             E++ +A  V       A    +     T+H      L+ + ++ +VT K++ +KI +   + +  LF +    S+ +   +  LA  +    E +E+      +  R+ T K+  +K  +N    + E RR        ++ +Q+ LL K D++ VDE +E++YEEI N L KAL+S   +E +FK+ +  LQ ++  LS +KAD+++LLE+K+ +  L     R   E  RS   F+             + RD+VF+ L+ KAD+ ++   +  +   +N ++++
Sbjct:   24 LGQELEGKTQLEQPRVSKKVLVKALRMQTEAM-----------RYMADEFDRLRDKMAEMEREARNTAKHVERVNSKLITVQGQVEDMNTKVYEIEVVQTKQAEQLKEIDE--VAVQVRATRE------------EVEHVAKSVE-----KANFVHNEFVQQTEHK-----LHVIREDHEVT-KKFAMKIEDRLNEEQKELFLD----SDHILHNKLSLAMWM----EAVEKDNKRKDEALRDCTDKM--IKQGRNVQDMMLETRRTLDDNTCAVEDVQRLLLDKADRTRVDEIIESKYEEICNQLDKALASVLGEEDEFKRASQELQQLVTHLSESKADKKDLLEVKEQV--LYDSRVRQQVENLRS---FIDIK----------MNRDDVFSALKTKADKDEMLALLKNLSDSMNASIVQ 384          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig196.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPJ2_ECTSI0.000e+081.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQW7_9PHAE2.770e-11880.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAK5_9STRA3.330e-10941.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XT03_9STRA1.830e-2125.94Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9YCT8_9STRA1.190e-2028.27Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U3R001_9STRA3.050e-1829.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4D7V4_HETAK5.890e-1634.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A067D8D9_SAPPC3.330e-1425.67Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485LHP3_9STRA2.400e-1223.64Aste57867_20714 protein n=1 Tax=Aphanomyces stella... [more]
D0NHC5_PHYIT3.560e-1226.07Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig196contigP-littoralis_Contig196:136407..144946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPJ2
Model size1866
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons15
Evalue0.0
EggNOG OGs28WC1@1|root,2R342@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_000790.1
Cds size1866
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789939.6436024-CDS-P-littoralis_Contig196:136406..1365501680789939.6436024-CDS-P-littoralis_Contig196:136406..136550Pylaiella littoralis U1_48CDSP-littoralis_Contig196 136407..136550 +
1680789939.6557522-CDS-P-littoralis_Contig196:136954..1370861680789939.6557522-CDS-P-littoralis_Contig196:136954..137086Pylaiella littoralis U1_48CDSP-littoralis_Contig196 136955..137086 +
1680789939.6743681-CDS-P-littoralis_Contig196:137919..1380741680789939.6743681-CDS-P-littoralis_Contig196:137919..138074Pylaiella littoralis U1_48CDSP-littoralis_Contig196 137920..138074 +
1680789939.6878912-CDS-P-littoralis_Contig196:138480..1385901680789939.6878912-CDS-P-littoralis_Contig196:138480..138590Pylaiella littoralis U1_48CDSP-littoralis_Contig196 138481..138590 +
1680789939.7054782-CDS-P-littoralis_Contig196:138829..1389631680789939.7054782-CDS-P-littoralis_Contig196:138829..138963Pylaiella littoralis U1_48CDSP-littoralis_Contig196 138830..138963 +
1680789939.7210147-CDS-P-littoralis_Contig196:139333..1394711680789939.7210147-CDS-P-littoralis_Contig196:139333..139471Pylaiella littoralis U1_48CDSP-littoralis_Contig196 139334..139471 +
1680789939.730088-CDS-P-littoralis_Contig196:139684..1397991680789939.730088-CDS-P-littoralis_Contig196:139684..139799Pylaiella littoralis U1_48CDSP-littoralis_Contig196 139685..139799 +
1680789939.738149-CDS-P-littoralis_Contig196:140236..1403341680789939.738149-CDS-P-littoralis_Contig196:140236..140334Pylaiella littoralis U1_48CDSP-littoralis_Contig196 140237..140334 +
1680789939.7512753-CDS-P-littoralis_Contig196:140867..1409691680789939.7512753-CDS-P-littoralis_Contig196:140867..140969Pylaiella littoralis U1_48CDSP-littoralis_Contig196 140868..140969 +
1680789939.7602832-CDS-P-littoralis_Contig196:141529..1417081680789939.7602832-CDS-P-littoralis_Contig196:141529..141708Pylaiella littoralis U1_48CDSP-littoralis_Contig196 141530..141708 +
1680789939.771681-CDS-P-littoralis_Contig196:142135..1423051680789939.771681-CDS-P-littoralis_Contig196:142135..142305Pylaiella littoralis U1_48CDSP-littoralis_Contig196 142136..142305 +
1680789939.7822375-CDS-P-littoralis_Contig196:142892..1430141680789939.7822375-CDS-P-littoralis_Contig196:142892..143014Pylaiella littoralis U1_48CDSP-littoralis_Contig196 142893..143014 +
1680789939.7915492-CDS-P-littoralis_Contig196:143854..1440191680789939.7915492-CDS-P-littoralis_Contig196:143854..144019Pylaiella littoralis U1_48CDSP-littoralis_Contig196 143855..144019 +
1680789939.8007143-CDS-P-littoralis_Contig196:144430..1444861680789939.8007143-CDS-P-littoralis_Contig196:144430..144486Pylaiella littoralis U1_48CDSP-littoralis_Contig196 144431..144486 +
1680789939.811186-CDS-P-littoralis_Contig196:144900..1449461680789939.811186-CDS-P-littoralis_Contig196:144900..144946Pylaiella littoralis U1_48CDSP-littoralis_Contig196 144901..144946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig196.27.1prot_P-littoralis_Contig196.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig196 136407..144946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig196.27.1

>prot_P-littoralis_Contig196.27.1 ID=prot_P-littoralis_Contig196.27.1|Name=mRNA_P-littoralis_Contig196.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=622bp
MDGPTLITQPPGYPEERPETDDMDGMLEHLADELEGKQLLEKPRVSKKVM
VFALKEQNRIIGQLRREANANFMLLDDRSRRTQELVQKLVGKINNQETQL
QKAEVTITMMQGEMEHMRSKIEEALKLIDMAKKLEEKIVSVQHRVEKHTA
TLKEHETRFGEIDRLAGRVSIVEEALAKIPGDNVFVTTDHMGEPMPLNTV
VQNLQVTLKEYNVKIHEQSKARLFYNLRQQSEVLAKAEGQLAEGVRVNRE
NIEEMQASLTQYARNTKKLASVKLAKNDDIDLAEIRRGQTSIAEQLDVIQ
QELLAKIDKSYVDEHVEARYEEIINHLHKALSSTEQDEQDFKKRANSLQD
IIEQLSANKADRRELLELKQFMVSLNGQERRNSTERRRSSAAFVGADGGE
GNPLTGPITRDEVFNLLEEKADRKDLEKRMAAIVTRINNAVIRRGSGGTS
SALAPGVTPTGPAGPSGYGGTPAKRGAGNGGGGMVQSNNDIDAWEAWESD
PEGALAMSKQLTDGFGRAVKPDGMAVGTCLSCKAPIVHPDKMDLFPGVSR
GGGFQLWAPSGKGPPLRAPPGDTLPELDATDGRHIIGKDGNLYLAQTNGP
AAAVETRPGGPAPSRPKTADG*
back to top

mRNA from alignment at P-littoralis_Contig196:136407..144946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig196.27.1 ID=mRNA_P-littoralis_Contig196.27.1|Name=mRNA_P-littoralis_Contig196.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8540bp|location=Sequence derived from alignment at P-littoralis_Contig196:136407..144946+ (Pylaiella littoralis U1_48)
ATGGATGGGCCAACACTCATAACGCAGCCACCTGGGTATCCCGAGGAGCG TCCGGAGACAGATGACATGGACGGTATGCTTGAGCATCTTGCTGACGAGC TGGAAGGAAAGCAATTGCTAGAAAAGCCTCGAGTGTCCAAAAAGGTATTC ATACTTACACACTTGTACACGTTTATCTCCACCTGTACCAGGTATAGTAT AACAGCAGCGGTACTTTCACCTGTTTGCCTGCAACATAAGCGTGCGGTTG TGGTGAAGCGGGTCATTTGGCGCGATGCTTGTGTTTCAAGCGGGGAATAA GCAGGTGGTGATTAACTGACTATCGAAGGGGTTGGTGGAAGCGCCAGGAC AACGAACGCTATATACAAGGGTATTCGCTGAATGCCCCAGACCAACGTTG ATGACCACATCGTACTATGAGTGCGAATACCGACACAATATGCTATGCTC GCCTACCCTGAAGCGCCTACCACCTTGCGGGATTTTCTGGTGATGCTTAA TCGTAGTGATTTCGATTTTCGTGCATAACTCGCTTCATTACATATCAGGT TATGGTGTTCGCCCTGAAGGAACAGAACCGTATAATCGGTCAACTTCGAC GAGAAGCCAACGCCAACTTTATGCTACTGGATGACCGGAGTCGGCGAACT CAGGAATTGGTACAGAAGCTTGTGGGCAAGGTGAGGAGAATCAAATCCCT CACGACGTTCCGAGCAACCACTCCGCTTGATGGCCCTCTGTGTTACATTG TTCATGAAGCTCAACATCGAACGAGGATATTTTAGTGTTGCTCACACGTT GTCGAGTTTCAGTCATCGTCCTTCTTGCACTGGCACAAGCAATACATATT TTTGACTCTATGTTTTTTGCATGGAATCACTGTTTCCCTACAGCACGCAA TACCATAGCTCGTCCTAAAGTATTACCGACAAAAGAACTTATCGCCGGGC AACATGGAAGGGGTTGTTGGCATAGGTGGCGCTTGTTTGTGGGTGTTGGC GGAGTTGGTGGCCGATGCCGGTGACTCCATGACGATAATCGTACATTTTC ATAACTCCTTGGATCGTGTTCGCTTTGTGCGCATGTAAGTAGCTCTTCAA TACTTACAACCACGAGGTACATTTGATGATCCTCTGTAGATCTTGTCTGT GCAATGCTGTCGTCGCTAAAGCTGACAGCTTCACGCGGGAAAAACAGCAG CGTGTGCGTCGTAGTCAGTGTGTCATACACACCGTAGTCACCGCCGACAC GTTTAACTGCGTACACATTTTGTGACTTTGGAGTTTTCTCCTTCGTTCCG TACCTTCCAAGAACCCCACCGTCGACTTGATAGCCTGTTGCGGGCGGCTT CAAAGTATCAGTGACAGTACCTGAAATTTGCAACCTACACTATATGTATG CCTTGTTGTAGCCTTTCTCAGGTATGGTATTCGCAACCGTCTAGACCCCT TCGCGGTGCGTGTTCATGATCAACCAATAAAAAAACACCCTGGAAAACTA CGTGTCGTTTCAGATTAACAACCAAGAGACCCAGCTTCAAAAGGCGGAAG TTACGATAACGATGATGCAGGGGGAGATGGAGCACATGCGGAGTAAGATT GAGGAGGCCTTGAAGCTAATCGATATGGCCAAGAAGCTCGAGGAGAAGAT AGTTTCCGTGCAACACAGGTGAGGACGCAGCTACGTTGTGCAACCGATGA CCATCAGTAGCAAACATGCCGCGTGATCGAGTAACTTTGATGAATGTACC ACAGTTTTGTCCGTTTACGTCGCTTCGAAAGTGATTTTTCTGGGAACATG TGACTTTCTGGGTTCTTAGCAAAATGTGGGCAGGAGGGTTTCGCTTTTAC AACATACCTTTGGGTCTGCTTTGCCCGGCCGGGATGGACGACCAATCGCA ACACCCACATTTCCACGGAATGCTTCAAGGTGTACTATTGAAGAAGGCAG AGAAAGTTGGTCAAGCCCCGTGCTTCCCTTGAAGTTGTTTTCGCCAGAGA GGCCTGAAAACGGAATGCACACTCCAACCTGCTCCATACAGTGTAGTGAC GGTGCCCAAACCTCTCCTTTGTAGGGTCGAGAAGCACACGGCCACCCTTA AGGAGCACGAGACACGGTTCGGAGAGATTGACCGGCTGGCCGGGAGGGTG TCGATCGTCGAGGAAGCCCTTGCGAAGATACCCGGTGCGTGGGAGCCGAT GTCCCCAAAGAGATGTCTGAACTCGAGAAAAACGCATCGTGGCAGCAGTC TCACCACAATTGTTTGAATACTCTTCTAGGCGACACGCCCAGCAAATCGG GAGAGGTTCATTGGGCTGCCATGGTTCCCTTGAAATATGGCTAAATTTTC TGACCCGTTCATCTTTGACGTGGCTGAAAACCTTTTTGCTGTTGTCCGGC TATCTATGACATGTGTGTCCCAGGGGACAATGTGTTCGTGACCACCGACC ACATGGGAGAGCCGATGCCCCTCAATACGGTGGTGCAGAACTTGCAGGTC ACGCTGAAGGAATACAACGTTAAGATCCACGAGCAATCTAAGGCACGTCT TTTCTACGTCAAAGTTTAAGCACAGTAGATGTTTCCATAGGTAATACGTA GATCCCTGTTGTGGCACTGATCCCTTCTCTAGCTAAGTGGCGATCTAGCT GTAACGCGTTTGCACAATTTCCGTGGGTGCTCGAGTCGTCTTCGCTCGCC ATATCGATACTGTAGTACCGTGCAACTTCTAAACTACGGTCAAAACTGTC GGTTTTTATTAACTCCTCTAACTGGACGTACTTCCTTCATGGGGAGATTG CTTGACCGAGGTCTGTATCGATTCAGCATTTGTCTTCCATTTTGTCTTAC CTGTTCGCCCCTTTAAATTCCCTCCTCGTCTCTGCCTTGTATTGCACTCG CGCCGTGATACTCGTTTGTATAAGCAGAACCTCAGACAGCAGAGCGAGGT GTTGGCGAAGGCAGAGGGCCAGCTGGCAGAGGGAGTGCGCGTCAACAGAG AAAACATCGAGGAAATGCAGGCAAGCCTTACGCAATACGCACGCAACACC AAGAAATTAGCTTCTGTCGGCTTTTACGAATAACATTGGTTCAATATCAC TATCCAGTACTCCGTCGCAGCACAATAATAAAGACGATTTTGAATAAATT GGCCGTTCCCGCAACTCGAGATGGGTGGCAGTAGCAGGTAGTGGTAGCCG TCGCAAAACAAGCATCCTTCAGCTTTGTTTCCAGAGATTCCGTTGGGCCA AACGCTACCCGTTCGTCGTTTGGAAAAGGTGAAACTGGCGAAGAACGACG ACATAGATCTAGCGGAAATCCGAAGGGGACAGACGTCAATCGCCGAGCAG CTCGACGTCATCCAGCAGGAGTTGTTGGCCAAGATCGACAAGTGTAAGAC GCTGCGGGCAGCTGTATCACGTTTGGAATTATTGAGGCTCTGTTGCTTTC GGATGATGATTAAACTGATGCGATTGTGACCCGCCGCAGCTCCAACACCA GCACTGGTTGCAACTGTGACATTGCCTAAACTGACGCGGCTTCACCACTG TATGCTGGTGGTCGGATGTTGCAAGGACTGTTGAGCTCGTATTCCTCTCC GTATTCAAGCCAACTTACAATTGCAAACAGTGAAGGTCACTGGTTGTTGT CGCTATCTCGCTATCTTCTTCGTGAGGTTGAGGTATGTCTGCATTTGTCT CCCACATAGCCACGCGTGATAGTTGCTGCTTCTGAAAAGATTTCAAGGTT GCACTGCTCTCACGTTGCACAACTTTTTTCAATTGTGTTTGTCCCACGCG CCATACCCTAACAACCCGTGTCTTAATCAGCCTACGTGGATGAGCACGTG GAAGCGCGGTATGAAGAGATCATCAACCATCTGCACAAGGCGCTATCCTC AACGGAGCAGGACGAGCAGGATTTCAAGGTGAGTACGTTTCGCTCAAAGC ACACTGGATAAACAGATGAACCACGCACGATGCCACTTTTTTGGTTCTGT TTCGAGACATACCTTGTTTAGGGCGTGTTATAACCAGAGACTCCAGCGAA AGCATTGCGTTGTGCGACATGCGCGTGCGTGAGGGTAATTACAGTAGTGT TCAGACACTGCACTGGCATTCCAGTTGCACATGCCCTCTGTGCTACGATA GTTGTTGATCGACCTTGAGAACCCGTACCAAGGCTGAACCTAGTAGCCGG TGTAACCGATGTTACCTAGTACCAGAGGTCGGCAGAGCCACATGCCTCTT ACCCCACAACATTTCCCCGTCCATGCATTTTGATCCATTCTTCAAAAGCC CGATTCCGAGGTCCTACGGACGCCGAGGGGGACTCCTGCACTATCGGTCG TTCAAATTACTGACTCTTACTCTTCTGACTTCAACCACGCAACATGTATG CCCTCTGATGATAGCGTTCGTCTGCTAAAATTGGTTCCGTTTCCCTCTTC TCCTACGACAGAAACGAGCCAACAGCCTGCAGGACATCATCGAGCAGCTA AGTGCCAACAAGGCGGACAGGAGAGAACTTTTGGAGCTGAAACAGTTCAT GGTGTCCTTGAACGTGAGTCCAGCGGAATGTTGGGTGAAGTCGACAAAAT CAAACGAGTGTATAGATGTGCTTTGCCATCTACCGTCGAGTACTGGTGAC CACTTAAAGATCGCACTTGCTTTCCATGCCCCACATAGAAGTAAAAATAC GAGTATCAAGGTTGAAGGACTTTTACTATGCCGCCGTATGTGGTGGTTAC TCTTCCTCCTGGCTGAGGTAAATAATATTACCAACGCCGTTTTTTCTTTT TTGCCGCGAGAGACGATGCTTCAATAAACCGAGCACACCAGCGAGTCAGC TACGATATCTCGCCTTGGTGCGGATATTTCTTGCTCTGAAACGATGGTTG ACGAAAGTACCATTTCCTAAACGTCAAAGGAGCCTCCTCTGTTAATGGAT GCCGAGCCACCTCGCTACCTCACGTCCCATCAAAGCACACCAGCACGTCA TAAGAACCAATGCGAGGCGTATATCACCATGGTACTCTCCATACTGTGGA CGGACTTTACGTCTCTTCGCCCCCCTCCCTTACACATGCATGCGCGAATC CATCTCCACCCGATGATATTCAGGGCCAAGAGCGACGAAACAGCACGGAA AGACGGCGCTCCTCGGCTGCCTTTGTTGGTGCAGACGGCGGAGAGGGAAA CCCGTTGACAGGGCCTATTACGCGAGACGAGGTGTTTAATTTGTTAGAGG AGAAGGCGGACAGGAAGGATCTAGAGAAGAGGATGGCGGCTATCGTGACA AGGTATTGTGGTAGTTCGAGCTGTACTTTTGCGGAATGCTCGTCCCGCGC CCTCAGTCGAACAGCTGGATTCGCAAGGTCATTTCCTCTGACGTTGTACG CTTCATCTGCGTAGGAAGTGCTGCAGTGAGGACTTCTCACGGGTAGAGTC GCATGCGCACCAAGCCTCGTACACAGCGGATCTCGACAAGGCGCTGTCCA AGGAAGTCCATAACAACGCTCCTCTTACCATGTGAAGAGTTGCAGCGACG AGAACAACCTAAGTTATTGGCAGTTTGATGGCATGCGTCTAAACCACGGC AAGCGTAGCCGACCCCCCACTTCCGAGCAGCTCAATATTACCCACAGACA GCATCGCTGACTCCACGCTCGAACGAACTATAAACCACTGGTACTTTTCT CTTTTTGTGCATTCCCGCGAATATTCAAGAATAAACAACGCTGTCATCCG AAGGGGGAGTGGGGGAACTTCGTCTGCGCTGGCACCGGGGGTGACGCCGA CGGGACCGGCGGGGCCGAGCGGCTACGGGGGAACCCCCGCAAAACGCGGG GCGGGGAATGGGGGGGGCGGCATGGTCCAGAGCAATAACGACATTGACGG TGCGTGATAATCTACACCGCTGTATGTAGTTGTCTGAGTGGGCATATGGG TGTGTGTGCTTGTTCACGCGTTCCATCCCCTACTCCCTTTCGCCGAAGAA GTGCTACTCCATCTGTGTCCAAAAGTACCGCTGGGGTTTCGGGTGGTTCT CGCTGTTTTATATTTCTTGGATTCCTTACGCTGTCAGTTATCCTCGCAGA AAAGATGAGTTTATATCCGAGGGCTCCGTGGCTGAATTATCCTCGTTGTT TTTGCAACAGCTTTTGGTACATTCAGAAAGTGAGTACATGTCGTCTTGTT AGTGTCTAGCGTATCGGTAAAGCTCCACGAAACGAACGTTCTTGACCGCA GGTAAGTACACCTGTGCCGTTGATGTTGTGTGGGACATCAATGAATAAAA ACGAAGGTCACAATTGCCTCGGCTGGTGCTTACGGGATGTTGAGGCCAGT TGGTCGATCAGAGCTTGAGTAATGCCTTTCCTCTGCCACCTCCTGTTTGT GAAACAAGGGTCAAACCCAGCTTGTCTCACGACCCCCAAACCTCGTGCAA CCACCGTCCCTCGCGAATTGCTGCTCTCGGCTTTAGCCTGGGAAGCATGG GAATCCGACCCAGAGGGAGCCCTAGCGATGAGCAAGCAGCTCACTGACGG CTTCGGAAGAGCTGTCAAACCGGACGGAATGGCTGTTGGCACTTGCCTAT CCTGCAAGGTAAACAAACACGTCAACGAAAACGCACTAGCAGCTGATTGA AAACAAACATTCGGAGGAGGCCACTTCAACGCACGCGGTTCGATTAGGCC ATTCTGTCTAAGCGATTTGTGTACCGCGAAGTTGTCGTTTTTAATATTGA ACGGGGCCCTCGAGAATGGTAAAACTCTTCCCAAAACGAATACTACTTCG TATGTCTTGTTATGGAGGAGGTCCCCTTCGCAAAGGGTACATTCACATAA CGTCCGTCGAGGATAGATTCCCTCTTTTCACATTGGCGTCGCGATCGGAC GTTTGCTATAGGTGGCCCCAATCCCGGGTTCAACGCCCGCCGATGACGAT TGGACCAAGAGCAGATTATTCGAACTTGCGGTACTTACGAGTCATGAGAC GTGGCGGAAGTGGTGGACCACCAACGCAACACGCAGTCCAGAGGAATGTA AAAAAAATTCGAATTCTATAAAAAAGGAGGAGTCCCCTTCGTAAGGCGTA CATTCCCACAACGCCCGTCGGGGACGGATTCCCTCTTCTCATGTTGTTGT TTATTTCACGCGAAAGGGAGGGTCGAGCTACTTGTAACGGTTCGCACTTC AAGCGTTGCAATACACTGAGTGGTATCCATTATAACTCTCCTACTCTGCG ATATGAAACCCACAAACTAGACACGCCGCTCCGTGAGCAAAAAGACGCTC AATCAGACGCGTCCCGTATTATGCAAGTAGATGCCGCTCACATAGAGTTC TCTGAACACGTTCGTTGCGTCGTGTCATGATGCTTCGCCCCCCTCTTGCC CCCCGTTGCCTGTCCACTGCCCCTACATTTCCACACCTACTCCGATAGGC ACCTATTGTCCACCCTGACAAGATGGACTTATTTCCGGGGGTGTCAAGAG GAGGTGGCTTTCAGCTTTGGGCACCTTCAGGGAAGGGACCGCCGCTTCGG GCACCCCCCGGGGACACTCTGCCCGAGCTAGATGCGACCGACGGTCGACA TATCATCGGGAAGGTATACGTTGTGTACTGAATGAGAAATGTTGCGCAAT CAAAGTCTGGAGCAGACAAATGAATGGGTGTCTGTTCGTTCGGTAGCTTG TTGTTGTTCCGACGCCTCCTGTTGGGCTAGGAAATAGACCGTGTTTGAGA TAGAAACCAGAACAACAGGCGAGCTCCATAGATCACAGCATGGTGGGGGT GTTTCGTGGAGAAGGACACGCATCCATCATCTGTAGTATCTGCGTATGTT CCGAACATGGGAAAACTTATGGTGGCTACACCCGCACGTGTGGTACCCCT TTGCGAGAAAAGTACACAATATTTTTCACTTTTACTGCATGAGTGCCTTA AAGCGCGCGACGAAAGCGCTTTTGTTTTGAGACTGTCATCTCTTAAAGAT TGTTTCGTCGCAAACGTTCCGCAGGATGGAAATCTCTACTTAGCGCAGAC GAATGGGCCAGCGGCGGCAGTAGAAACAAGGTGCGAACAAAAAAAAACAA CGACGCGATAGACGAGGCATCAAAAGTAAGAATCTGTGATACGTTCGACA GAACCCGCCGAAAAGAGTCTCCCCTCGGGGGGCTCACAGTGCTAAATATC TACTCACAGGGTAGTGTGTCCTTTCTCGTATGCGTGTTCTTTTGTGAAAG CAGCGTAGTATAACGCGGAATGAGGGCAGATCAATGGTTTCAGGAGTATT CATGTCACCCAATTGGAGCAGGTGTGGCACCCCTTGTTTGTGGAACCTCC CTGCCTCCGATAGCTCTCCTCCGTTCACGCAAATCCTTCATAAATCCTAC TAGAAAAATGTGGCCTCGGTCCTTGTTCTTGTACTTTGTGTCCATGTTCT CTTTCTTTTACCATGGTCCACTGCCTGTTTCTACTTTCTGGCAGACCCGG CGGGCCTGCTCCATCACGGCCGAAGACTGCAGACGGATGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig196:136407..144946+

>mRNA_P-littoralis_Contig196.27.1 ID=mRNA_P-littoralis_Contig196.27.1|Name=mRNA_P-littoralis_Contig196.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1866bp|location=Sequence derived from alignment at P-littoralis_Contig196:136407..144946+ (Pylaiella littoralis U1_48)
ATGGATGGGCCAACACTCATAACGCAGCCACCTGGGTATCCCGAGGAGCG
TCCGGAGACAGATGACATGGACGGTATGCTTGAGCATCTTGCTGACGAGC
TGGAAGGAAAGCAATTGCTAGAAAAGCCTCGAGTGTCCAAAAAGGTTATG
GTGTTCGCCCTGAAGGAACAGAACCGTATAATCGGTCAACTTCGACGAGA
AGCCAACGCCAACTTTATGCTACTGGATGACCGGAGTCGGCGAACTCAGG
AATTGGTACAGAAGCTTGTGGGCAAGATTAACAACCAAGAGACCCAGCTT
CAAAAGGCGGAAGTTACGATAACGATGATGCAGGGGGAGATGGAGCACAT
GCGGAGTAAGATTGAGGAGGCCTTGAAGCTAATCGATATGGCCAAGAAGC
TCGAGGAGAAGATAGTTTCCGTGCAACACAGGGTCGAGAAGCACACGGCC
ACCCTTAAGGAGCACGAGACACGGTTCGGAGAGATTGACCGGCTGGCCGG
GAGGGTGTCGATCGTCGAGGAAGCCCTTGCGAAGATACCCGGGGACAATG
TGTTCGTGACCACCGACCACATGGGAGAGCCGATGCCCCTCAATACGGTG
GTGCAGAACTTGCAGGTCACGCTGAAGGAATACAACGTTAAGATCCACGA
GCAATCTAAGGCACGTCTTTTCTACAACCTCAGACAGCAGAGCGAGGTGT
TGGCGAAGGCAGAGGGCCAGCTGGCAGAGGGAGTGCGCGTCAACAGAGAA
AACATCGAGGAAATGCAGGCAAGCCTTACGCAATACGCACGCAACACCAA
GAAATTAGCTTCTGTGAAACTGGCGAAGAACGACGACATAGATCTAGCGG
AAATCCGAAGGGGACAGACGTCAATCGCCGAGCAGCTCGACGTCATCCAG
CAGGAGTTGTTGGCCAAGATCGACAAGTCCTACGTGGATGAGCACGTGGA
AGCGCGGTATGAAGAGATCATCAACCATCTGCACAAGGCGCTATCCTCAA
CGGAGCAGGACGAGCAGGATTTCAAGAAACGAGCCAACAGCCTGCAGGAC
ATCATCGAGCAGCTAAGTGCCAACAAGGCGGACAGGAGAGAACTTTTGGA
GCTGAAACAGTTCATGGTGTCCTTGAACGGCCAAGAGCGACGAAACAGCA
CGGAAAGACGGCGCTCCTCGGCTGCCTTTGTTGGTGCAGACGGCGGAGAG
GGAAACCCGTTGACAGGGCCTATTACGCGAGACGAGGTGTTTAATTTGTT
AGAGGAGAAGGCGGACAGGAAGGATCTAGAGAAGAGGATGGCGGCTATCG
TGACAAGAATAAACAACGCTGTCATCCGAAGGGGGAGTGGGGGAACTTCG
TCTGCGCTGGCACCGGGGGTGACGCCGACGGGACCGGCGGGGCCGAGCGG
CTACGGGGGAACCCCCGCAAAACGCGGGGCGGGGAATGGGGGGGGCGGCA
TGGTCCAGAGCAATAACGACATTGACGCCTGGGAAGCATGGGAATCCGAC
CCAGAGGGAGCCCTAGCGATGAGCAAGCAGCTCACTGACGGCTTCGGAAG
AGCTGTCAAACCGGACGGAATGGCTGTTGGCACTTGCCTATCCTGCAAGG
CACCTATTGTCCACCCTGACAAGATGGACTTATTTCCGGGGGTGTCAAGA
GGAGGTGGCTTTCAGCTTTGGGCACCTTCAGGGAAGGGACCGCCGCTTCG
GGCACCCCCCGGGGACACTCTGCCCGAGCTAGATGCGACCGACGGTCGAC
ATATCATCGGGAAGGATGGAAATCTCTACTTAGCGCAGACGAATGGGCCA
GCGGCGGCAGTAGAAACAAGACCCGGCGGGCCTGCTCCATCACGGCCGAA
GACTGCAGACGGATGA
back to top