mRNA_P-littoralis_Contig196.25.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig196.25.1 vs. uniprot
Match: D7FPJ4_ECTSI (Vacuolar sorting receptor, putative (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ4_ECTSI) HSP 1 Score: 165 bits (418), Expect = 1.130e-49 Identity = 86/106 (81.13%), Postives = 92/106 (86.79%), Query Frame = 1
Query: 268 MAASVVLFERGEVPVVEKVLKAQAAGAAGVIVVDDGGCSGGDGPFDCGRLGGVRDGGFAKRDGAHAWSGVRIPAVLVSARDGERLRGMMRLQKVSVEGLGEQLVER 585
MAA VVLFERGEVPVVEK+LKAQ AGA GVIVVD+GGC DG DCGRLGG RDGGFAKRDG HAWSGV+IPAV+VSA DGER RGMM LQK+ VEGLGEQLV+R
Sbjct: 1 MAACVVLFERGEVPVVEKILKAQTAGAVGVIVVDNGGCD--DGLVDCGRLGGARDGGFAKRDGVHAWSGVKIPAVMVSAADGERFRGMMLLQKIVVEGLGEQLVQR 104
BLAST of mRNA_P-littoralis_Contig196.25.1 vs. uniprot
Match: A0A835Z4S0_9STRA (PA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S0_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.300e-44 Identity = 81/167 (48.50%), Postives = 114/167 (68.26%), Query Frame = 1
Query: 79 RADAAFPVLHLHFCLGCPFPGAEGSLVLALAPYHGIREFKVSGGLVYAVPNKGNADLLLNGDDMAASVVLFERGEVPVVEKVLKAQAAGAAGVIVVDDGGCSGGDGPFDCGRLGGVRDGGFAKRDGAHAWSGVRIPAVLVSARDGERLRGMMRLQKVSVEGLGEQLV 579
+A P+ ++ FCL CP P EGS V AL HG R F +G ++YAVPN G+A+LL N D++A + L +RG +P++EKVLK QAAGA G ++VD+G CS + CGR GGV +GGFA RD + WS V+IPA+LVS ++G R++ +M L+ + + G G+QLV
Sbjct: 34 QASGDSPLQYVEFCLDCPDPHLEGSHVPALRAAHGQRAFNATGDIIYAVPNDGSAELL-NPDEVAGHIALLDRGTIPLIEKVLKVQAAGAVGALLVDNGECS--EDFMRCGRTGGVPEGGFAWRDQPYDWSKVKIPALLVSEKEGSRVKALMSLRSIFITGHGDQLV 197
BLAST of mRNA_P-littoralis_Contig196.25.1 vs. uniprot
Match: A0A482SJ43_9ARCH (PA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ43_9ARCH) HSP 1 Score: 115 bits (289), Expect = 8.700e-29 Identity = 62/162 (38.27%), Postives = 96/162 (59.26%), Query Frame = 1
Query: 85 DAAFPVLHLHFCLGCPFPGAEGSLVLALAPYHGIREFKVSGGLVYAVPNKGNADLLLNGDDMAASVVLFERGEVPVVEKVLKAQAAGAAGVIVVDDGGCSGGDGPFDCG-RLGGVRDGGFAKRDGAHAWSGVRIPAVLVSARDGERLRGMMRLQKVSVEGLG 567
DA + + +CL CP P +EGS++ +L +G+ E+ V+G LVY VPN L N ++ + +RGE+ +++KVLK Q A A GV++ DDG C + CG R G +++GGFA D +W V IP V+V++ + +RLR M ++ V + GLG
Sbjct: 34 DADGALKWITYCLKCPDPRSEGSILPSLNAKYGVDEYSVTGELVYCVPNYAEGPFLANDHQLSDRIAFVDRGEISLLDKVLKIQEANALGVVIADDGSCY--EDFHYCGPRAGSLQEGGFAAYDNEQSWLAVEIPVVMVTSTNADRLRDAMGIKSVYIPGLG 193
BLAST of mRNA_P-littoralis_Contig196.25.1 vs. uniprot
Match: A0A6G0W7Z3_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7Z3_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 1.240e-20 Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 1
Query: 109 LHFCLGCPFPGAEGSLVLALAPYHGIREFKVSGGLVYAVPNKGNADLLLNGDDMAASVVLFERGEVPVVEKVLKAQAAGAAGVIVVDDGGCSGGDGPFDCGRLGGVRDGGFAKRDGAHAWSGVRIPAVLVSARDGERLRGMMRLQKVSVEGL 564
L FC C + GS V + ++ V G + YAVPN N DL N + +VL +RG+VP++EKV + Q AG V++VDDG CS G F+CG LG F ++D + W+ + IP VL+ DG R++ M L ++ V L
Sbjct: 46 LTFCKKCHDVASLGSFVHTWDSRYNPSDYHVQGEIAYAVPNTANDDLF-NIHQLEGRIVLVDRGDVPILEKVERVQEAGGIAVVLVDDGECSDG---FECGSLGSRSTHNFLEQDDSFRWNHIVIPVVLILHDDGMRIKARMSLVRMDVPDL 193
BLAST of mRNA_P-littoralis_Contig196.25.1 vs. uniprot
Match: A0A7S2WGD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGD9_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 2.230e-19 Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 1
Query: 109 LHFCLGCPFPGAEGSLVLALAPYHGIREFKVSGGLVYAVPNKGNADLLLNGDDMAASVVLFERGEVPVVEKVLKAQAAGAAGVIVVDDGGCS 384
L FC CP P EG+ VL L G +E+ V+G + YAVPN+ LLN +++ + +RG++P+VEK+L AQ AGA GV++ DDG C+
Sbjct: 58 LEFCRSCPDPHLEGTQVLGLGAAQGPKEYHVTGDMAYAVPNQMQQGALLNSMELSGKIAFVDRGDIPLVEKILLAQDAGAVGVVIADDGNCA 149
BLAST of mRNA_P-littoralis_Contig196.25.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 2.550e-11 Identity = 47/112 (41.96%), Postives = 60/112 (53.57%), Query Frame = 1
Query: 187 REFKVSGGLVYAVPNKGNADLLLNGDDMAASVVLFERGEVPVVEKVLKAQAAGAAGVIVVDDGGCSGGDGPFDCGRLGGVRDGGFAKRDGAHAWSGVRIPAVLVSARDGERL 522
R FKV +V A P ++L NG + +V+ +RG++P+V KVL AQ AGA GVIV DDG C G G G G+A D W VR+P VL+ D ERL
Sbjct: 78 RSFKVKSEVVVAQPADARSELE-NGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCV--YGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERL 186
BLAST of mRNA_P-littoralis_Contig196.25.1 vs. uniprot
Match: A0A7S3UWA2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA2_HETAK) HSP 1 Score: 54.7 bits (130), Expect = 1.760e-5 Identity = 37/73 (50.68%), Postives = 42/73 (57.53%), Query Frame = 1
Query: 298 GEVPVVEKVLKAQAAGAAGVIVVDDGGCSGGDGPFDCGRLGGVRDGGFAKRDGAHAWSGVRIPAVLVSARDGE 516
G VP+V K L+AQAAGA GVIVVDDG C D G R +A+ D W GVR+P VLV A D E
Sbjct: 222 GGVPLVTKALRAQAAGALGVIVVDDGRCRAFDQRCVRGADLAARGELWARGDRPGPWRGVRVPVVLVLAGDAE 294
BLAST of mRNA_P-littoralis_Contig196.25.1 vs. uniprot
Match: A0A8J5XRT0_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XRT0_DIALT) HSP 1 Score: 53.1 bits (126), Expect = 9.580e-5 Identity = 36/87 (41.38%), Postives = 47/87 (54.02%), Query Frame = 1
Query: 280 VVLFERGEVPVVEKVLKAQAAGAAGVIVVDDGGCSGGDGPFDCGRLGGVRDGGFAKRDGAHAWSG--VRIPAVLVSARDGERLRGMM 534
+ L +RG V+KVL+AQAAGAAGV+V +D DGG + WSG VRIPAV+VS DG+ LR ++
Sbjct: 678 LALVDRGACTFVQKVLRAQAAGAAGVVVAND------------------EDGGPVRMGLPADWSGEEVRIPAVMVSRADGDALRALI 746 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig196.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig196.25.1 >prot_P-littoralis_Contig196.25.1 ID=prot_P-littoralis_Contig196.25.1|Name=mRNA_P-littoralis_Contig196.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp RSSSSSSSSSSRGLQGNVRAAWVGSSRADAAFPVLHLHFCLGCPFPGAEGback to top mRNA from alignment at P-littoralis_Contig196:106772..111060- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig196.25.1 ID=mRNA_P-littoralis_Contig196.25.1|Name=mRNA_P-littoralis_Contig196.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4289bp|location=Sequence derived from alignment at P-littoralis_Contig196:106772..111060- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig196:106772..111060- >mRNA_P-littoralis_Contig196.25.1 ID=mRNA_P-littoralis_Contig196.25.1|Name=mRNA_P-littoralis_Contig196.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig196:106772..111060- (Pylaiella littoralis U1_48)back to top |