mRNA_P-littoralis_Contig196.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.660e-22 Identity = 64/138 (46.38%), Postives = 82/138 (59.42%), Query Frame = 3
Query: 12 HYTECAGSLRTASGS-TIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGG----LELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
+Y EC L A+G IVG+GD+ V S G ++LLK VAHVP + +L+S + L +G L LE+ V GG VYFP G L VQTG R+DS R+LACA+IAPG AKA P+DIND+HC+
Sbjct: 499 NYHECDRRLSVAAGKQAFAIVGYGDVRVTIGS--RVGTTDLLLKRVAHVPELNYNLVSLTALLKQ---TKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDS-GRELACAIIAPGNAKANRTPVDINDFHCA 630
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.690e-22 Identity = 64/138 (46.38%), Postives = 82/138 (59.42%), Query Frame = 3
Query: 12 HYTECAGSLRTASGS-TIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGG----LELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
+Y EC L A+G IVG+GD+ V S G ++LLK VAHVP + +L+S + L +G L LE+ V GG VYFP G L VQTG R+DS R+LACA+IAPG AKA P+DIND+HC+
Sbjct: 879 NYHECDRRLSVAAGKQAFAIVGYGDVRVTIGS--RVGTTDLLLKRVAHVPELNYNLVSLTALLKQ---TKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDS-GRELACAIIAPGNAKANRTPVDINDFHCA 1010
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5KFZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ8_9PHAE) HSP 1 Score: 100 bits (250), Expect = 3.290e-22 Identity = 64/138 (46.38%), Postives = 82/138 (59.42%), Query Frame = 3
Query: 12 HYTECAGSLRTASGS-TIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGG----LELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
+Y EC L A+G IVG+GD+ V S G ++LLK VAHVP + +L+S + L +G L LE+ V GG VYFP G L VQTG R+DS R+LACA+IAPG AKA P+DIND+HC+
Sbjct: 342 NYHECDRRLSVAAGKQAFAIVGYGDVRVTIGS--RVGTTDLLLKRVAHVPELIYNLVSLTALLKQ---TKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDS-GRELACAIIAPGNAKANRTPVDINDFHCA 473
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE) HSP 1 Score: 100 bits (248), Expect = 8.040e-22 Identity = 63/138 (45.65%), Postives = 82/138 (59.42%), Query Frame = 3
Query: 12 HYTECAGSLRTASGS-TIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGG----LELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
+Y EC L A+G IVG+GD+ V S G ++LLK VAHVP + +L+S + L +G L LE+ V GG VYFP G L VQTG R++S R+LACA+IAPG AKA P+DIND+HC+
Sbjct: 977 NYHECDRRLSVAAGKQAFAIVGYGDVRVTIGS--RVGTTDLLLKRVAHVPELNYNLVSLTALLKQ---TKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRINS-GRELACAIIAPGNAKANRTPVDINDFHCA 1108
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 1.100e-21 Identity = 63/138 (45.65%), Postives = 82/138 (59.42%), Query Frame = 3
Query: 12 HYTECAGSLRTASGS-TIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGG----LELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
+Y EC L A+G IVG+GD+ V S G ++LLK VAHVP + +L+S + L +G L LE+ V GG VYFP G+L VQTG R+ S R+LACA+IAPG AKA P+DIND+HC+
Sbjct: 499 NYHECDRRLSVAAGKQAFAIVGYGDVRVTIGS--RVGTTDLLLKRVAHVPELNYNLVSLTALLKQ---TKGRLAADERELEVFVGGGEPVYFPLWGELFVQTGHRIGS-GRELACAIIAPGNAKANRTPVDINDFHCA 630
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5KPC5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC5_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 7.910e-21 Identity = 63/138 (45.65%), Postives = 80/138 (57.97%), Query Frame = 3
Query: 12 HYTECAGSLRTASGS-TIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGG----LELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
+Y EC L A+G IVG+GD+ V S G ++LLK VAHVP + +L+S + L +G L LE+ V GG VYFP G L VQT R DS R+LACA+IAPG AKA P+DIND+HC+
Sbjct: 301 NYHECDRRLSVAAGKQAFAIVGYGDVRVTIGS--RVGTTDLLLKRVAHVPELNYNLVSLTALLKQ---TKGRLAADERELEVFVGGGESVYFPLWGDLFVQTSHRKDS-GRELACAMIAPGNAKANRTPVDINDFHCA 432
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.530e-19 Identity = 58/140 (41.43%), Postives = 78/140 (55.71%), Query Frame = 3
Query: 3 GMFHYTECAGSLRTASGSTIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDG------HTHQGGLGGLELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYH 404
G Y EC +R A+G T PIVG+GD+ V S G ++LLK VAHVP + +L+S ++L DG + H+ LEL+ GG VY P G L V G R ++ A IAPG AKA+ AP++IND+H
Sbjct: 411 GFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRG--GTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFQTKTLNKHE-----LELERGGGESVYSPRCGNLYVHNGCRTHTEH---AYTAIAPGDAKASSAPVEINDFH 540
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5JS61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS61_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 4.540e-16 Identity = 54/139 (38.85%), Postives = 74/139 (53.24%), Query Frame = 3
Query: 3 GMFHYTECAGSLRTASGSTI-PIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGGLELDVDGGG--QVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
G Y EC +R A+G PI G+GD+ V S DG ++LLK VAHVP + L+ ++L DG L EL+++ G VYFP G L VQ R ++ A I G AKA+ AP+D+ND+HC+
Sbjct: 350 GFVRYQECNRRVRVAAGENFFPIAGYGDVTVTLSS--RDGTTDLLLKRVAHVPRLDYKLVFLTSL-FDGGFETNTLNKHELELERGAGESVYFPRCGNLYVQNRVRTHTEH---AYTAIVSGNAKASSAPVDVNDFHCT 482
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5L9Z3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Z3_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.310e-15 Identity = 54/151 (35.76%), Postives = 76/151 (50.33%), Query Frame = 3
Query: 3 GMFHYTECAGSLRTASGSTI-PIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTL----------------ALDGHTHQGGLGGLELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYH 404
G Y EC +R A+G T PIVG+GD+ V S DG+ ++LL+ VA+ P + +L+S +L LD H +EL+ + G V+FP G L Q G R ++ ACA APG AK + P+DIND+H
Sbjct: 341 GFVRYQECDRRVRVAAGGTFFPIVGYGDVAVTLSSG--DGKTDLLLERVANAPRLDYNLVSLMSLIDVSLTFLIDDGFKTKTLDKHE-------VELEKEEGQSVFFPRCGNLYGQNGFRTHTEH---ACAATAPGNAKTSSTPVDINDFH 479
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5KEH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH4_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 1.240e-13 Identity = 54/138 (39.13%), Postives = 73/138 (52.90%), Query Frame = 3
Query: 3 GMFHYTECAGSLRTASGSTI-PIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDG-HTHQGGLGGLELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
G E +R A G T PIVG+GD+ V S D ++L + VAHVP +++S ++L DG T+ LEL+ G VYFP G L V G R ++ A A AP AKA+ AP+DIND+HC+
Sbjct: 340 GFVRNEEFDWRVRVAVGETFFPIVGYGDVTVTLSS--RDDTTDLLFERVAHVPRPDFNVVSLTSLFDDGFETNTLNKHELELERGGKESVYFPRCGNLYVPNGFRTYTEH---AYASFAPSNAKASSAPVDINDFHCA 472 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig196.4.1 >prot_P-littoralis_Contig196.4.1 ID=prot_P-littoralis_Contig196.4.1|Name=mRNA_P-littoralis_Contig196.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp MFHYTECAGSLRTASGSTIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVback to top mRNA from alignment at P-littoralis_Contig196:23022..23431+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig196.4.1 ID=mRNA_P-littoralis_Contig196.4.1|Name=mRNA_P-littoralis_Contig196.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=410bp|location=Sequence derived from alignment at P-littoralis_Contig196:23022..23431+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig196:23022..23431+ >mRNA_P-littoralis_Contig196.4.1 ID=mRNA_P-littoralis_Contig196.4.1|Name=mRNA_P-littoralis_Contig196.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig196:23022..23431+ (Pylaiella littoralis U1_48)back to top |