mRNA_P-littoralis_Contig196.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig196.4.1
Unique NamemRNA_P-littoralis_Contig196.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.660e-22
Identity = 64/138 (46.38%), Postives = 82/138 (59.42%), Query Frame = 3
Query:   12 HYTECAGSLRTASGS-TIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGG----LELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
            +Y EC   L  A+G     IVG+GD+ V   S    G  ++LLK VAHVP +  +L+S + L       +G L      LE+ V GG  VYFP  G L VQTG R+DS  R+LACA+IAPG AKA   P+DIND+HC+
Sbjct:  499 NYHECDRRLSVAAGKQAFAIVGYGDVRVTIGS--RVGTTDLLLKRVAHVPELNYNLVSLTALLKQ---TKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDS-GRELACAIIAPGNAKANRTPVDINDFHCA 630          
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.690e-22
Identity = 64/138 (46.38%), Postives = 82/138 (59.42%), Query Frame = 3
Query:   12 HYTECAGSLRTASGS-TIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGG----LELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
            +Y EC   L  A+G     IVG+GD+ V   S    G  ++LLK VAHVP +  +L+S + L       +G L      LE+ V GG  VYFP  G L VQTG R+DS  R+LACA+IAPG AKA   P+DIND+HC+
Sbjct:  879 NYHECDRRLSVAAGKQAFAIVGYGDVRVTIGS--RVGTTDLLLKRVAHVPELNYNLVSLTALLKQ---TKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDS-GRELACAIIAPGNAKANRTPVDINDFHCA 1010          
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5KFZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFZ8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.290e-22
Identity = 64/138 (46.38%), Postives = 82/138 (59.42%), Query Frame = 3
Query:   12 HYTECAGSLRTASGS-TIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGG----LELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
            +Y EC   L  A+G     IVG+GD+ V   S    G  ++LLK VAHVP +  +L+S + L       +G L      LE+ V GG  VYFP  G L VQTG R+DS  R+LACA+IAPG AKA   P+DIND+HC+
Sbjct:  342 NYHECDRRLSVAAGKQAFAIVGYGDVRVTIGS--RVGTTDLLLKRVAHVPELIYNLVSLTALLKQ---TKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRIDS-GRELACAIIAPGNAKANRTPVDINDFHCA 473          
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 8.040e-22
Identity = 63/138 (45.65%), Postives = 82/138 (59.42%), Query Frame = 3
Query:   12 HYTECAGSLRTASGS-TIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGG----LELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
            +Y EC   L  A+G     IVG+GD+ V   S    G  ++LLK VAHVP +  +L+S + L       +G L      LE+ V GG  VYFP  G L VQTG R++S  R+LACA+IAPG AKA   P+DIND+HC+
Sbjct:  977 NYHECDRRLSVAAGKQAFAIVGYGDVRVTIGS--RVGTTDLLLKRVAHVPELNYNLVSLTALLKQ---TKGRLAADERELEVFVGGGESVYFPLWGDLFVQTGHRINS-GRELACAIIAPGNAKANRTPVDINDFHCA 1108          
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.100e-21
Identity = 63/138 (45.65%), Postives = 82/138 (59.42%), Query Frame = 3
Query:   12 HYTECAGSLRTASGS-TIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGG----LELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
            +Y EC   L  A+G     IVG+GD+ V   S    G  ++LLK VAHVP +  +L+S + L       +G L      LE+ V GG  VYFP  G+L VQTG R+ S  R+LACA+IAPG AKA   P+DIND+HC+
Sbjct:  499 NYHECDRRLSVAAGKQAFAIVGYGDVRVTIGS--RVGTTDLLLKRVAHVPELNYNLVSLTALLKQ---TKGRLAADERELEVFVGGGEPVYFPLWGELFVQTGHRIGS-GRELACAIIAPGNAKANRTPVDINDFHCA 630          
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5KPC5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC5_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 7.910e-21
Identity = 63/138 (45.65%), Postives = 80/138 (57.97%), Query Frame = 3
Query:   12 HYTECAGSLRTASGS-TIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGG----LELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
            +Y EC   L  A+G     IVG+GD+ V   S    G  ++LLK VAHVP +  +L+S + L       +G L      LE+ V GG  VYFP  G L VQT  R DS  R+LACA+IAPG AKA   P+DIND+HC+
Sbjct:  301 NYHECDRRLSVAAGKQAFAIVGYGDVRVTIGS--RVGTTDLLLKRVAHVPELNYNLVSLTALLKQ---TKGRLAADERELEVFVGGGESVYFPLWGDLFVQTSHRKDS-GRELACAMIAPGNAKANRTPVDINDFHCA 432          
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.530e-19
Identity = 58/140 (41.43%), Postives = 78/140 (55.71%), Query Frame = 3
Query:    3 GMFHYTECAGSLRTASGSTIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDG------HTHQGGLGGLELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYH 404
            G   Y EC   +R A+G T PIVG+GD+ V   S    G  ++LLK VAHVP +  +L+S ++L  DG      + H+     LEL+  GG  VY P  G L V  G R  ++    A   IAPG AKA+ AP++IND+H
Sbjct:  411 GFVRYEECDRRVRVAAGETFPIVGYGDVTVTLSSRG--GTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFQTKTLNKHE-----LELERGGGESVYSPRCGNLYVHNGCRTHTEH---AYTAIAPGDAKASSAPVEINDFH 540          
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5JS61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS61_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.540e-16
Identity = 54/139 (38.85%), Postives = 74/139 (53.24%), Query Frame = 3
Query:    3 GMFHYTECAGSLRTASGSTI-PIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDGHTHQGGLGGLELDVDGGG--QVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
            G   Y EC   +R A+G    PI G+GD+ V   S   DG  ++LLK VAHVP +   L+  ++L  DG      L   EL+++ G    VYFP  G L VQ   R  ++    A   I  G AKA+ AP+D+ND+HC+
Sbjct:  350 GFVRYQECNRRVRVAAGENFFPIAGYGDVTVTLSS--RDGTTDLLLKRVAHVPRLDYKLVFLTSL-FDGGFETNTLNKHELELERGAGESVYFPRCGNLYVQNRVRTHTEH---AYTAIVSGNAKASSAPVDVNDFHCT 482          
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5L9Z3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Z3_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.310e-15
Identity = 54/151 (35.76%), Postives = 76/151 (50.33%), Query Frame = 3
Query:    3 GMFHYTECAGSLRTASGSTI-PIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTL----------------ALDGHTHQGGLGGLELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYH 404
            G   Y EC   +R A+G T  PIVG+GD+ V   S   DG+ ++LL+ VA+ P +  +L+S  +L                 LD H        +EL+ + G  V+FP  G L  Q G R  ++    ACA  APG AK +  P+DIND+H
Sbjct:  341 GFVRYQECDRRVRVAAGGTFFPIVGYGDVAVTLSSG--DGKTDLLLERVANAPRLDYNLVSLMSLIDVSLTFLIDDGFKTKTLDKHE-------VELEKEEGQSVFFPRCGNLYGQNGFRTHTEH---ACAATAPGNAKTSSTPVDINDFH 479          
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Match: A0A6H5KEH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.240e-13
Identity = 54/138 (39.13%), Postives = 73/138 (52.90%), Query Frame = 3
Query:    3 GMFHYTECAGSLRTASGSTI-PIVGHGDLLVAFPSANNDGEVEVLLKNVAHVPLIKIDLISTSTLALDG-HTHQGGLGGLELDVDGGGQVYFPYVGKLPVQTGRRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS 410
            G     E    +R A G T  PIVG+GD+ V   S   D   ++L + VAHVP    +++S ++L  DG  T+      LEL+  G   VYFP  G L V  G R  ++    A A  AP  AKA+ AP+DIND+HC+
Sbjct:  340 GFVRNEEFDWRVRVAVGETFFPIVGYGDVTVTLSS--RDDTTDLLFERVAHVPRPDFNVVSLTSLFDDGFETNTLNKHELELERGGKESVYFPRCGNLYVPNGFRTYTEH---AYASFAPSNAKASSAPVDINDFHCA 472          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig196.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5K4H5_9PHAE1.660e-2246.38CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]
A0A6H5L715_9PHAE1.690e-2246.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KFZ8_9PHAE3.290e-2246.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNN1_9PHAE8.040e-2245.65CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LGF7_9PHAE1.100e-2145.65Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPC5_9PHAE7.910e-2145.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXF7_9PHAE1.530e-1941.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JS61_9PHAE4.540e-1638.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9Z3_9PHAE2.310e-1535.76CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KEH4_9PHAE1.240e-1339.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig196contigP-littoralis_Contig196:23022..23431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size412
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789938.314008-UTR-P-littoralis_Contig196:23021..230261680789938.314008-UTR-P-littoralis_Contig196:23021..23026Pylaiella littoralis U1_48UTRP-littoralis_Contig196 23022..23026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789938.325093-CDS-P-littoralis_Contig196:23026..234311680789938.325093-CDS-P-littoralis_Contig196:23026..23431Pylaiella littoralis U1_48CDSP-littoralis_Contig196 23027..23431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig196.4.1prot_P-littoralis_Contig196.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig196 23027..23431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig196.4.1

>prot_P-littoralis_Contig196.4.1 ID=prot_P-littoralis_Contig196.4.1|Name=mRNA_P-littoralis_Contig196.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MFHYTECAGSLRTASGSTIPIVGHGDLLVAFPSANNDGEVEVLLKNVAHV
PLIKIDLISTSTLALDGHTHQGGLGGLELDVDGGGQVYFPYVGKLPVQTG
RRVDSDSRQLACAVIAPGKAKATHAPLDINDYHCS
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mRNA from alignment at P-littoralis_Contig196:23022..23431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig196.4.1 ID=mRNA_P-littoralis_Contig196.4.1|Name=mRNA_P-littoralis_Contig196.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=410bp|location=Sequence derived from alignment at P-littoralis_Contig196:23022..23431+ (Pylaiella littoralis U1_48)
ACGGTATGTTTCACTACACCGAATGCGCTGGAAGTCTGCGTACGGCTAGC GGTAGCACTATCCCCATCGTGGGGCACGGTGATCTCCTTGTGGCTTTCCC CTCAGCAAACAACGATGGGGAAGTGGAAGTTCTGTTGAAGAACGTAGCAC ACGTCCCCCTGATCAAAATAGATCTCATTTCCACCTCTACCCTCGCTCTT GATGGGCACACTCACCAAGGGGGGCTTGGTGGTTTGGAGCTTGACGTTGA TGGTGGAGGTCAAGTGTATTTCCCTTACGTGGGAAAACTGCCCGTGCAGA CTGGTCGCCGTGTAGACTCAGACTCGAGACAACTTGCCTGTGCCGTAATC GCTCCTGGGAAGGCGAAAGCCACCCACGCCCCCCTTGACATCAACGACTA CCATTGCTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig196:23022..23431+

>mRNA_P-littoralis_Contig196.4.1 ID=mRNA_P-littoralis_Contig196.4.1|Name=mRNA_P-littoralis_Contig196.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig196:23022..23431+ (Pylaiella littoralis U1_48)
ATGTTTCACTACACCGAATGCGCTGGAAGTCTGCGTACGGCTAGCGGTAG
CACTATCCCCATCGTGGGGCACGGTGATCTCCTTGTGGCTTTCCCCTCAG
CAAACAACGATGGGGAAGTGGAAGTTCTGTTGAAGAACGTAGCACACGTC
CCCCTGATCAAAATAGATCTCATTTCCACCTCTACCCTCGCTCTTGATGG
GCACACTCACCAAGGGGGGCTTGGTGGTTTGGAGCTTGACGTTGATGGTG
GAGGTCAAGTGTATTTCCCTTACGTGGGAAAACTGCCCGTGCAGACTGGT
CGCCGTGTAGACTCAGACTCGAGACAACTTGCCTGTGCCGTAATCGCTCC
TGGGAAGGCGAAAGCCACCCACGCCCCCCTTGACATCAACGACTACCATT
GCTCG
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