mRNA_P-littoralis_Contig195.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig195.94.1
Unique NamemRNA_P-littoralis_Contig195.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig195.94.1 vs. uniprot
Match: D7FVB3_ECTSI (Chain A, Structure Of Mouse Wrn Exonuclease Domain pdb|2E6M|A Chain A, Structure Of Mouse Werner Exonuclease Domain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB3_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 5.220e-87
Identity = 140/211 (66.35%), Postives = 162/211 (76.78%), Query Frame = 1 
Query:    4 VAGVDAEWEMDASGRGKVATIQIAPLRGRAFLFHVFKGGSGFTKETFPATLKSLLEDGTIIKTGVAINNDASHIFKDYGVIVANTVDLRTLAKSNLIVTSSRTLAGMTASLLGKQLPKDTVRFSRWGSAILSGEQRDYAIRDAVASVLLYEKMFVCKDPITSAPSELLDLGVGSEMRLYNSSHSACVAVGELVSEDTAKAALHRWDSSAKL 636
            V G DAEW+    GR  VAT QIA LRG +FLFH+ +G SGFTKETFPA LK+LLED +IIK GVAIN DA+H+  D GV +A+TVDLR LA S L+VTSSRTLAG+TA LLG+QL KDTVR SRWGS  LS EQRDYAIRDAVAS LLYE +   KDPITS PS   D  +G ++RLYN+SHSACVAVG +VS+ TA+AAL  W SS  +
Sbjct:    2 VCGADAEWQFSPRGREPVATFQIAALRGPSFLFHLQRGSSGFTKETFPAPLKALLEDPSIIKAGVAINTDATHMLNDNGVKMASTVDLRVLAVSKLVVTSSRTLAGLTACLLGRQLLKDTVRCSRWGSPRLSDEQRDYAIRDAVASALLYEAIHKNKDPITSVPSSPFDPAIGLKVRLYNASHSACVAVGHVVSDATAEAALRHWQSSVSV 212
[Close]
BLAST of mRNA_P-littoralis_Contig195.94.1 vs. uniprot
Match: A0A6H5JQB4_9PHAE (3'-5' exonuclease domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQB4_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 2.850e-76
Identity = 139/257 (54.09%), Postives = 162/257 (63.04%), Query Frame = 1 
Query:    4 VAGVDAEWEMDASGRGKVATIQIAPLRGRAFLFHVFKGGSGFTKETFPATLKSLLEDGTIIKTGVAINNDASHIFKDYGVIVANTVDLRTLAKSNLIVTSSRTLAGMTASLLGKQLPKDTVRFSRWGSAILSGEQRDYAIRDAVASVLLYEKMFVCKDPITSAPSELLDLGVGS----------------------------------------------EMRLYNSSHSACVAVGELVSEDTAKAALHRWDSSAKL 636
            + G DAEW+    GR  +AT QIA LR  +FLFH+ +G SGFTKETFPA LK+LLED +IIK GVAIN DA+H+  DYGV +A+TV LR LA S L+VTSS+TLAG+TA LLG+QLPKDTVR SRWGSA LS EQRD AIRDAVAS L YE +   KDPITS PS   D  VG                                               ++RLYN+SHSACVAVG +VS+ T +AAL  W SSAKL
Sbjct:    2 MCGADAEWQFSPRGREPLATFQIAALRVPSFLFHLQRGNSGFTKETFPAPLKALLEDPSIIKAGVAINTDATHMLNDYGVKMASTVGLRVLAVSKLVVTSSQTLAGLTACLLGRQLPKDTVRCSRWGSAQLSVEQRDCAIRDAVASALFYEAIHTNKDPITSVPSSPFDPAVGLKVSAYALWYRPYFDVDRQQQIMAGSKFVLKPKQQRLPSFFCPLRVLQVRLYNASHSACVAVGHVVSDATVEAALRHWQSSAKL 258
[Close]
BLAST of mRNA_P-littoralis_Contig195.94.1 vs. uniprot
Match: A0A6H5KTU1_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU1_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 2.400e-70
Identity = 136/256 (53.12%), Postives = 160/256 (62.50%), Query Frame = 1 
Query:    7 AGVDAEWEMDASGRGKVATIQIAPLRGRAFLFHVFKGGSGFTKETFPATLKSLLEDGTIIKTGVAINNDASHIFKDYGVIVANTVDLRTLAKSNLIVTSSRTLAGMTASLLGKQLPKDTVRFSRWGSAILSGEQRDYAIRDAVASVLLYEKMFVCKDPITSAPSELLDLGVGS----------------------------------------------EMRLYNSSHSACVAVGELVSEDTAKAALHRWDSSAKL 636
            A   ++W+    GR  +AT QIA LR  +FLFH+ +G SGFTKETFPA LK+LLED +IIK GVAIN DA+H+  DYGV +A+TV LR LA S L+VTSS+TLAG+TA LLG+QLPKDTVR SRWGSA LS EQRD AIRDAVAS L YE +   KDPITS PS   D  VG                                               ++RLYN+SHSACVAVG +VS+ T +AAL  W SSAKL
Sbjct:  308 AACGSQWQFSPRGREPLATFQIAALRVPSFLFHLQRGNSGFTKETFPAPLKALLEDPSIIKAGVAINTDATHMLNDYGVKMASTVGLRVLAVSKLVVTSSQTLAGLTACLLGRQLPKDTVRCSRWGSAQLSVEQRDCAIRDAVASALFYEAIHTNKDPITSVPSSPFDPAVGLKVSAYALWYRPYFDVDRQQQIMAGSKFVLKPKQQRLPSFFCPLRVLQVRLYNASHSACVAVGHVVSDATVEAALRHWQSSAKL 563
[Close]
BLAST of mRNA_P-littoralis_Contig195.94.1 vs. uniprot
Match: A0A6H5KYH3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH3_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 4.280e-69
Identity = 117/179 (65.36%), Postives = 137/179 (76.54%), Query Frame = 1 
Query:    4 VAGVDAEWEMDASGRGKVATIQIAPLRGRAFLFHVFKGGSGFTKETFPATLKSLLEDGTIIKTGVAINNDASHIFKDYGVIVANTVDLRTLAKSNLIVTSSRTLAGMTASLLGKQLPKDTVRFSRWGSAILSGEQRDYAIRDAVASVLLYEKMFVCKDPITSAPSELLDLGVGSEMRLY 540
            + G DAEW+    GR  VAT QIA L+G +FLFH+ +G SGFTKETFPA LK+LLED + IK GVAIN DA+H+  DYGV +A+TVDLR LA S L+VTSSRTLAG+TA LLG+QLPKDTVR SRWGSA LS EQRDYAIRDAVAS LLYE +   KDPITS PS   D  +G ++  +
Sbjct:  240 ICGADAEWQFSPRGRKPVATFQIAALKGPSFLFHLQRGSSGFTKETFPAPLKALLEDPSTIKAGVAINTDATHMLNDYGVKMASTVDLRVLAVSKLVVTSSRTLAGLTACLLGRQLPKDTVRCSRWGSAQLSVEQRDYAIRDAVASALLYEAIHKNKDPITSVPSSHFDPAIGLKVSAF 418
[Close]
BLAST of mRNA_P-littoralis_Contig195.94.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 9.090e-66
Identity = 129/234 (55.13%), Postives = 148/234 (63.25%), Query Frame = 1 
Query:    4 VAGVDAEWEMDASGRGKVATIQIAPLRGRAFLFHVFKGGSGFTKETFPATLKSLLEDGTIIKTGVAINNDASHIFKDYGVIVANTVDLRTLAKSNLIVTSSRTLAGMTASLLGKQLPKDTVRFSRWGSAILSGEQRDYAIRDAVASVLLYEKMFVCKDPITSAPSELLDLGVGS----------------------------------------------EMRLYNSSHSACVA 567
            V G DAEW+    GR  VAT QIA LRG +FLFH+ +G SGFTKETFPA LK+LLED +IIK GVAIN DA+H+  DYGV +A+TVDLR LA S L+VTSSRTLAG+TA L+G+QLPKDTVR SRWGS  LS EQRDYAIRDAVAS LLYE +   KDPITS PS   D  +G                                               ++RLYN+SHSACVA
Sbjct:  510 VCGADAEWQFSPRGREPVATFQIAALRGPSFLFHLQRGSSGFTKETFPAPLKALLEDSSIIKAGVAINTDATHMLNDYGVKMASTVDLRVLAVSRLVVTSSRTLAGLTACLVGRQLPKDTVRCSRWGSPRLSDEQRDYAIRDAVASALLYEAIHENKDPITSVPSSPFDPAIGLKVSAFALCYRPYFDVDRQQRIMAGSKFVLKPKQKRLSSFFCPLRVLQVRLYNASHSACVA 743
[Close]
BLAST of mRNA_P-littoralis_Contig195.94.1 vs. uniprot
Match: A0A6H5L0E3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E3_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 3.140e-56
Identity = 114/213 (53.52%), Postives = 131/213 (61.50%), Query Frame = 1 
Query:    4 VAGVDAEWEMDASGRGKVATIQIAPLRGRAFLFHVFKGGSGFTKETFPATLKSLLEDGTIIK----------------------------------------TGVAINNDASHIFKDYGVIVANTVDLRTLAKSNLIVTSSRTLAGMTASLLGKQLPKDTVRFSRWGSAILSGEQRDYAIRDAVASVLLYEKMFVCKDPITSAPSELLDLGVG 522
            + G DAEW+    GR  VAT QIA LRG +FLFH+ +G SGFTKETFPA LK+LLED +IIK                                         GVAIN DA+HI  DYG+ +A+TV LR LA S L+VTSSRTLAG+TA LLG+QLPKDTVR SRWG+A LS EQRD AIRDAVAS  LYE +   KDPIT   S   DL +G
Sbjct:  359 MCGADAEWQFSPRGREPVATFQIAALRGPSFLFHLQRGSSGFTKETFPAPLKALLEDPSIIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVAINTDATHILNDYGMKMASTVGLRVLAVSKLVVTSSRTLAGLTACLLGRQLPKDTVRCSRWGNAQLSVEQRDCAIRDAVASAFLYEVIHNNKDPITPVSSSPFDLAIG 571
[Close]
BLAST of mRNA_P-littoralis_Contig195.94.1 vs. uniprot
Match: A0A6H5KJ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ21_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 3.180e-53
Identity = 95/138 (68.84%), Postives = 110/138 (79.71%), Query Frame = 1 
Query:  223 IFKDYGVIVANTVDLRTLAKSNLIVTSSRTLAGMTASLLGKQLPKDTVRFSRWGSAILSGEQRDYAIRDAVASVLLYEKMFVCKDPITSAPSELLDLGVGSEMRLYNSSHSACVAVGELVSEDTAKAALHRWDSSAKL 636
            +  DYGV +A+TVDLR L+ S L+VTSSRTLAG+TA LLG+QLPKDTVR SR GSA LS EQRDYAIRDAVAS LLYE +   KDPITS PS   D  +G ++RLYN+SHSACVAVG +VS+ TA+AAL  W SSAKL
Sbjct:    1 MLNDYGVQMASTVDLRVLSVSKLVVTSSRTLAGLTACLLGRQLPKDTVRCSRRGSAQLSDEQRDYAIRDAVASALLYEAIHKNKDPITSVPSSPFDPAIGLKVRLYNASHSACVAVGHVVSDATAEAALRHWQSSAKL 138
[Close]
BLAST of mRNA_P-littoralis_Contig195.94.1 vs. uniprot
Match: A0A6H5JMD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD0_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 4.290e-49
Identity = 100/179 (55.87%), Postives = 117/179 (65.36%), Query Frame = 1 
Query:    4 VAGVDAEWEMDASGRGKVATIQIAPLRGRAFLFHVFKGGSGFTKETFPATLKSLLEDGTIIKTGVAINNDASHIFKDYGVIVANTVDLRTLAKSNLIVTSSRTLAGMTASLLGKQLPKDTVRFSRWGSAILSGEQRDYAIRDAVASVLLYEKMFVCKDPITSAPSELLDLGVGSEMRLY 540
            + G DAEW+    GR  VAT QIA LRG +FL                        +  IIK GV IN DA+H+  DYGV +A+TVDLR LA S L+VTSSRTLAG+TA LLG+QLPKDTVR+SRWGSA LS EQRDYAIRDAVAS LLYE ++  KDPITS PS   D  +G ++  Y
Sbjct:  469 MCGADAEWQFSPRGREPVATFQIAALRGPSFLSE---------------------RELCIIKAGVVINRDATHMLNDYGVKMASTVDLRVLAVSKLVVTSSRTLAGLTACLLGRQLPKDTVRYSRWGSAQLSVEQRDYAIRDAVASALLYEAIYKNKDPITSVPSSPCDPAIGVKVSAY 626
[Close]
BLAST of mRNA_P-littoralis_Contig195.94.1 vs. uniprot
Match: A0A6H5KF75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF75_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 5.350e-40
Identity = 92/186 (49.46%), Postives = 107/186 (57.53%), Query Frame = 1 
Query:  223 IFKDYGVIVANTVDLRTLAKSN--LIVTSSRTLAGMTASLLGKQLPKDTVRFSRWGSAILSGEQRDYAIRDAVASVLLYEKMFVCKDPITSAPSELLDLGVGS----------------------------------------------EMRLYNSSHSACVAVGELVSEDTAKAALHRWDSSAKL 636
            +  DY V +A+TV LR LA S   L+VTSSRTLAG+TA LLG+QLPKDTVR SRWGSA LS EQRDYAIRD VAS LLYE +   KDPITS PS   D  +G                                               ++RLYN+SHSACVAVG ++S+ T +AAL  W SSAKL
Sbjct:    1 MLNDYDVKMASTVGLRVLAVSKMVLVVTSSRTLAGLTACLLGRQLPKDTVRCSRWGSAQLSVEQRDYAIRDVVASALLYEAIHKNKDPITSVPSSPFDPAIGLKVSADALWYRPYFDVDRQQQIMAGSKFVLKPKQQRLPSFFCPLRVLQVRLYNASHSACVAVGHVMSDATVEAALRHWQSSAKL 186
[Close]
BLAST of mRNA_P-littoralis_Contig195.94.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.200e-37
Identity = 89/213 (41.78%), Postives = 130/213 (61.03%), Query Frame = 1 
Query:    4 VAGVDAEWEMDASGR--GKVATIQIAPLRGRAFLFHVFKGGSGFTKETFPATLKSLLEDGTIIKTGVAINNDASHIFKDYGVIVANTVDLRTLAKSNLIVTSSRTLAGMTASLLGKQLPKDTV-RFSRWGSAILSGEQRDYAIRDAVASVLLYEKMFVCKDPITSAPSELLDLGVGSEMRLYNSSHSACVAVGELVSEDTAKAALHRWDSSAK 633
            V G+D EWE   +G     V+T+Q++   G A+ F + +G    T   FP  L++LLE+ +I K GV IN+DA+++ +DYG+ VANTVDLRT A+   + T SR+LAGM +SLLG+QLPKD V R SRW S +   ++        VA           +DPI S P   ++L  G+++RLY+++H++CV VGE+  +DTA  AL  W   A+
Sbjct:  114 VLGLDCEWEPSLAGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETPSRSLAGMASSLLGRQLPKDPVIRSSRWSSPLSDNQE--------VAKF---------QDPIFSPPP--VELHPGTKVRLYSNNHASCVGVGEVQDDDTAAEALAGWFPGAR 307
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVB3_ECTSI5.220e-8766.35Chain A, Structure Of Mouse Wrn Exonuclease Domain... [more]
A0A6H5JQB4_9PHAE2.850e-7654.093'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A6H5KTU1_9PHAE2.400e-7053.133'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KYH3_9PHAE4.280e-6965.363'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JQG2_9PHAE9.090e-6655.133'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5L0E3_9PHAE3.140e-5653.523'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KJ21_9PHAE3.180e-5368.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMD0_9PHAE4.290e-4955.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF75_9PHAE5.350e-4049.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV1_ECTSI1.200e-3741.78Similar to Werner syndrome protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig195contigP-littoralis_Contig195:416369..417353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FVB3
Preferred nameWRN
PFAMsDEAD,DNA_pol_A_exo1,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size636
Max annot lvl2759|Eukaryota
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons3
Evalue4.88e-82
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
Ec32 ortholog descriptionRibonuclease H-like domain
Ec32 orthologEc-14_000440.1
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
Cds size606
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.86389-UTR-P-littoralis_Contig195:416368..4163981680789937.86389-UTR-P-littoralis_Contig195:416368..416398Pylaiella littoralis U1_48UTRP-littoralis_Contig195 416369..416398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.8790386-CDS-P-littoralis_Contig195:416398..4165571680789937.8790386-CDS-P-littoralis_Contig195:416398..416557Pylaiella littoralis U1_48CDSP-littoralis_Contig195 416399..416557 +
1680789937.887323-CDS-P-littoralis_Contig195:416768..4171071680789937.887323-CDS-P-littoralis_Contig195:416768..417107Pylaiella littoralis U1_48CDSP-littoralis_Contig195 416769..417107 +
1680789937.8981109-CDS-P-littoralis_Contig195:417245..4173531680789937.8981109-CDS-P-littoralis_Contig195:417245..417353Pylaiella littoralis U1_48CDSP-littoralis_Contig195 417246..417353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig195.94.1prot_P-littoralis_Contig195.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig195 416399..417353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig195.94.1

>prot_P-littoralis_Contig195.94.1 ID=prot_P-littoralis_Contig195.94.1|Name=mRNA_P-littoralis_Contig195.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=202bp
MDASGRGKVATIQIAPLRGRAFLFHVFKGGSGFTKETFPATLKSLLEDGT
IIKTGVAINNDASHIFKDYGVIVANTVDLRTLAKSNLIVTSSRTLAGMTA
SLLGKQLPKDTVRFSRWGSAILSGEQRDYAIRDAVASVLLYEKMFVCKDP
ITSAPSELLDLGVGSEMRLYNSSHSACVAVGELVSEDTAKAALHRWDSSA
KL
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mRNA from alignment at P-littoralis_Contig195:416369..417353+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig195.94.1 ID=mRNA_P-littoralis_Contig195.94.1|Name=mRNA_P-littoralis_Contig195.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=985bp|location=Sequence derived from alignment at P-littoralis_Contig195:416369..417353+ (Pylaiella littoralis U1_48)
CAGGTAGCTGGTGTAGATGCCGAGTGGGAAATGGACGCTTCGGGGCGGGG
GAAAGTGGCAACCATCCAGATAGCACCGTTGCGCGGTAGAGCCTTCCTCT
TTCACGTGTTCAAGGGCGGTTCTGGGTTCACGAAGGAGACATTCCCTGCT
ACCCTCAAATCTCTCCTCGAGGACGGCACCATTATCAAGGTGAGCAAGAA
ACCAGAAAAAGTAAACCATGTAAAATAGATCATGTACACATGCGATGTGG
CCGCAATAATGTTCTGATCGCACCGTGGCGTGGGTCGATGATGGTTGTTT
TTTCGTGTGCCTGGTAGAATACAAATGCGCCTTGTACTGCTGTTTCCCTT
AACGACTGCCGCATGTTTCAAACTGTTTCGCTGGTTGTCCCGCTGCGCAG
ACTGGTGTTGCAATCAACAACGATGCTTCGCACATCTTCAAAGACTACGG
CGTGATCGTCGCGAACACCGTGGACCTGCGCACCCTCGCCAAGTCCAACC
TGATAGTGACGTCGTCTCGAACACTCGCCGGGATGACGGCGTCCCTATTG
GGGAAGCAGCTGCCGAAGGACACCGTTCGGTTCTCCCGCTGGGGGAGCGC
GATTCTTTCCGGCGAACAACGGGACTACGCGATCAGGGACGCCGTCGCGT
CGGTGCTGTTGTACGAGAAGATGTTTGTCTGCAAGGATCCCATCACTTCT
GCGCCCTCTGAACTCCTTGATCTTGGCGTCGGTTCCGAGGTGCGTTGTGC
TTTAGTACTGCAGCCTCGGCCTTACCACACACCTGTACCAGGAATCCACG
GAAACCGTTTCAAGCACCCAAGCCTCAACACCTCAGCGTACATTCCACCT
TTCCCCATCCCCTATCCACGACAACAGATGCGCCTTTACAACTCCAGCCA
CTCCGCTTGTGTGGCGGTGGGCGAACTGGTTTCCGAGGATACCGCGAAAG
CCGCTCTTCATCGTTGGGACAGTTCAGCCAAGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig195:416369..417353+

>mRNA_P-littoralis_Contig195.94.1 ID=mRNA_P-littoralis_Contig195.94.1|Name=mRNA_P-littoralis_Contig195.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=606bp|location=Sequence derived from alignment at P-littoralis_Contig195:416369..417353+ (Pylaiella littoralis U1_48)
ATGGACGCTTCGGGGCGGGGGAAAGTGGCAACCATCCAGATAGCACCGTT
GCGCGGTAGAGCCTTCCTCTTTCACGTGTTCAAGGGCGGTTCTGGGTTCA
CGAAGGAGACATTCCCTGCTACCCTCAAATCTCTCCTCGAGGACGGCACC
ATTATCAAGACTGGTGTTGCAATCAACAACGATGCTTCGCACATCTTCAA
AGACTACGGCGTGATCGTCGCGAACACCGTGGACCTGCGCACCCTCGCCA
AGTCCAACCTGATAGTGACGTCGTCTCGAACACTCGCCGGGATGACGGCG
TCCCTATTGGGGAAGCAGCTGCCGAAGGACACCGTTCGGTTCTCCCGCTG
GGGGAGCGCGATTCTTTCCGGCGAACAACGGGACTACGCGATCAGGGACG
CCGTCGCGTCGGTGCTGTTGTACGAGAAGATGTTTGTCTGCAAGGATCCC
ATCACTTCTGCGCCCTCTGAACTCCTTGATCTTGGCGTCGGTTCCGAGAT
GCGCCTTTACAACTCCAGCCACTCCGCTTGTGTGGCGGTGGGCGAACTGG
TTTCCGAGGATACCGCGAAAGCCGCTCTTCATCGTTGGGACAGTTCAGCC
AAGCTG
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