mRNA_P-littoralis_Contig195.93.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig195.93.1
Unique NamemRNA_P-littoralis_Contig195.93.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig195.93.1 vs. uniprot
Match: A0A6H5K4A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A9_9PHAE)

HSP 1 Score: 368 bits (945), Expect = 2.940e-125
Identity = 182/294 (61.90%), Postives = 223/294 (75.85%), Query Frame = 1 
Query:    1 LNFRYKCAACEAYNGTVEESARRPKTFNAWDADCLERLPDYVSEELPYLLTRRPGIDVRLLDRLADMLVRGMSFSGAAKSICEAHVTKFMREQVKYTSIADIRRTQRTGLFGAA---LTPERFGSFDDSTKYGGAVPSDRYLRDVWRIFFSQALVLKVDGDRWTREHYEHRVIQRWDGEILGGDASFKFAKIVRLGATPGGERTRPVYGIFTVFNEDEQVVFQRPMKTNSLSELVDDLKLFFFGRLVRNGFRLPVLWNTDDCCADRCMLQRMSRELEEATGASSYLGDELSAGV 873
            + FR KCA    +N   +E+ +R  +FNAWDA CL RLP+Y+S+E P+LLT R GI++ ++ RLAD LVRG  FS AAK+I +AH TKFM +Q+KYTS+ + RRT  +G+F +A    TPERFGSFDDSTKYGGAVPS+ YLRDV R +FS+  VL+VD   WT E Y+HR++QRWDG+ILGGDASFKFAKI+RLGA  G ERTRPVYG FTVFNE EQVV+QR MKT +LSEL ++LKL F  R VRN F++P LWNT DCC DR +LQR+ RE EE TG   Y  DE+ AGV
Sbjct:    9 MGFRCKCAKRAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTERSGIEICMVGRLADDLVRGKGFSAAAKNILQAHTTKFMVDQLKYTSLVNTRRTS-SGIFRSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIRLGAKAGEERTRPVYGFFTVFNECEQVVWQRLMKTGALSELAEELKLLFM-RFVRNDFKVPTLWNTHDCCDDRQLLQRILREFEEETGIRLYREDEVDAGV 300
[Close]
BLAST of mRNA_P-littoralis_Contig195.93.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE)

HSP 1 Score: 387 bits (994), Expect = 1.210e-122
Identity = 193/326 (59.20%), Postives = 241/326 (73.93%), Query Frame = 1 
Query:    1 LNFRYKCAACEAYNGTVEESARRPKTFNAWDADCLERLPDYVSEELPYLLTRRPGIDVRLLDRLADMLVRGMSFSGAAKSICEAHV--------------------------TKFMREQVKYTSIADIRRTQRTGLFGAA---LTPERFGSFDDSTKYGGAVPSDRYLRDVWRIFFSQALVLKVDGDRWTREHYEHRVIQRWDGEILGGDASFKFAKIVRLGATPGGERTRPVYGIFTVFNEDEQVVFQRPMKTNSLSELVDDLKLFFFGRLVRNGFRLPVLWNTDDCCADRCMLQRMSRELEEATGASSYLGDELSAGVQLESLP 891
            + FRYKCA C  +N   EE+ +R  +FNAWDA CL+RLP+Y+S+E P LLT+R GI++R++DRLAD LV G  FS AAK+IC+ +V                          TKFM +Q+KYTS+ + RRT  +G+F +A    TPERFGSFDDSTKYGGAVPS+ YLRDVW +++S+  VL+VDG  WT E Y+HR++QRWDGE+L GDASFKFAKI+RLGA  G ER++PVYG+FTVFNE EQVV+QRPMKT +LSELV++LK FF  R VRNGF++  LWNTDDCC DR +LQR+ RE EEATG S +L DE+ AGVQLE LP
Sbjct:  149 MGFRYKCAKCAKFNQGKEEAEKRKTSFNAWDAGCLQRLPEYISKEFPSLLTKRSGIEIRMVDRLADDLVHGKGFSAAAKNICQVNVHFLICSVLKITXXXXXXXXXXXXXXTTKFMVDQLKYTSLVNSRRTS-SGIFRSANHAKTPERFGSFDDSTKYGGAVPSEHYLRDVWWLYYSKLPVLEVDGVGWTLEEYQHRLMQRWDGEVLSGDASFKFAKIIRLGARAGEERSKPVYGLFTVFNEYEQVVWQRPMKTGALSELVEELKPFF-NRFVRNGFKVFTLWNTDDCCDDRQLLQRVFREFEEATGISLHLEDEVDAGVQLELLP 472
[Close]
BLAST of mRNA_P-littoralis_Contig195.93.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE)

HSP 1 Score: 364 bits (934), Expect = 9.430e-122
Identity = 178/300 (59.33%), Postives = 219/300 (73.00%), Query Frame = 1 
Query:    1 LNFRYKCAACEAYNGTVEESARRPKTFNAWDADCLERLPDYVSEELPYLLTRRPGIDVRLLDRLADMLVRGMSFSGAAKSICEAHVTKFMREQVKYTSIADIRRTQRTGLFGAAL---TPERFGSFDDSTKYGGAVPSDRYLRDVWRIFFSQALVLKVDGDRWTREHYEHRVIQRWDGEILGGDASFKFAKIVRLGATPGGERTRPVYGIFTVFNEDEQVVFQRPMKTNSLSELVDDLKLFFFGRLVRNGFRLPVLWNTDDCCADRCMLQRMSRELEEATGASSYLGDELSAGVQLESLP 891
            + FRYKCA C  +N   +E+ +   +FNAWDA CL RLP+Y+S+E P+LLT+R GI++ +++RLAD LV G  FS AAK+I +AH TKFM +Q+KYTS+ + RRT  +G+F +A    TPERFGSFDDSTKYGGAVPS+ YLRDVWR++F +  VL+VD   WT E Y+HR++QRWDG+ILGGDASFKFAKI+RLGA  G ERTRPVYG FTVFNE EQ+                     FF R VRNGF++P LWNTDDCC DR +LQR+ RE EE TG S YL DE+ AGVQLE LP
Sbjct:  115 MEFRYKCAKCAEFNKGKQEAEKHKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVNRLADDLVHGKDFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTS-SGIFRSANLANTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFPKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIRLGAKAGEERTRPVYGFFTVFNEYEQL---------------------FFMRFVRNGFKVPTLWNTDDCCDDRQLLQRIFREFEEVTGISLYLEDEVDAGVQLELLP 392
[Close]
BLAST of mRNA_P-littoralis_Contig195.93.1 vs. uniprot
Match: D7FVB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB4_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 4.380e-115
Identity = 167/241 (69.29%), Postives = 199/241 (82.57%), Query Frame = 1 
Query:  178 LLDRLADMLVRGMSFSGAAKSICEAHVTKFMREQVKYTSIADIRRTQRTGLFGAA---LTPERFGSFDDSTKYGGAVPSDRYLRDVWRIFFSQALVLKVDGDRWTREHYEHRVIQRWDGEILGGDASFKFAKIVRLGATPGGERTRPVYGIFTVFNEDEQVVFQRPMKTNSLSELVDDLKLFFFGRLVRNGFRLPVLWNTDDCCADRCMLQRMSRELEEATGASSYLGDELSAGVQLESLP 891
            ++DRLAD LV G  FS AAK+IC+AH TKFM +Q+KYTS+ + RRT  +G+F +A    TPERFGSFDDSTKYGGAVPS+ YLRDVWR++FS+  VL+VDG  WT E Y+HR++QRWDGE+LGGDASFKFAKI+RLGA  G ER+RPVYG+FTVFNE EQVV+QRPMKT +LSELV++LKLFF  R VRNGF++P LWNTDDCC DR +LQR+ RE EEAT  S YL DE+ AGVQLE LP
Sbjct:    1 MVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVNSRRTS-SGIFRSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEVDGVSWTLEEYQHRLMQRWDGEVLGGDASFKFAKIIRLGARAGEERSRPVYGLFTVFNEYEQVVWQRPMKTGALSELVEELKLFFM-RFVRNGFKVPTLWNTDDCCDDRQLLQRVFREFEEATWISLYLEDEVDAGVQLELLP 239
[Close]
BLAST of mRNA_P-littoralis_Contig195.93.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 4.870e-112
Identity = 163/259 (62.93%), Postives = 203/259 (78.38%), Query Frame = 1 
Query:    1 LNFRYKCAACEAYNGTVEESARRPKTFNAWDADCLERLPDYVSEELPYLLTRRPGIDVRLLDRLADMLVRGMSFSGAAKSICEAHVTKFMREQVKYTSIADIRRTQRTGLFGAA---LTPERFGSFDDSTKYGGAVPSDRYLRDVWRIFFSQALVLKVDGDRWTREHYEHRVIQRWDGEILGGDASFKFAKIVRLGATPGGERTRPVYGIFTVFNEDEQVVFQRPMKTNSLSELVDDLKLFFFGRLVRNGFRLPVLWNT 768
            + FRYKCA C  +N   +E+ +R  +FNAWDA CL RLP+Y+S+E P+LLT+R GI++ ++DRLAD LV G  FS AAK+I +AH TKFM +Q+KYTS+ + RRT  +G+F +A    TPERFGSFDDSTKYGGAVPS+ YLRDV R +FS+  VL+VD   WT E Y HR++QRWDG+ILGGD+SFKFAKI+RL A  G ERTRPVYG FTVFNE +QVV+QRPM T +LSEL ++LKLFF  R VRNGF++P LWNT
Sbjct:  149 MGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTS-SGIFRSANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEVDSVDWTLEEYHHRLMQRWDGDILGGDSSFKFAKIIRLRAKAGEERTRPVYGSFTVFNECKQVVWQRPMNTGALSELAEELKLFFM-RFVRNGFKVPTLWNT 405
[Close]
BLAST of mRNA_P-littoralis_Contig195.93.1 vs. uniprot
Match: A0A6H5KE68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE68_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 4.960e-101
Identity = 145/217 (66.82%), Postives = 168/217 (77.42%), Query Frame = 1 
Query:    1 LNFRYKCAACEAYNGTVEESARRPKTFNAWDADCLERLPDYVSEELPYLLTRRPGIDVRLLDRLADMLVRGMSFSGAAKSICEAHVTKFMREQVKYTSIADIRRTQRTGLFGAALTPERFGSFDDSTKYGGAVPSDRYLRDVWRIFFSQALVLKVDGDRWTREHYEHRVIQRWDGEILGGDASFKFAKIVRLGATPGGERTRPVYGIFTVFNEDEQV 651
            ++ R  C  C  YNGTVEES +RP +FNAWD  CL+RLPDYVS+E P++LT R GID+RL+DRLAD LV G  FS AAK I +AH TKFM  Q+KY S+AD RR+ R  LFGAA  P +FGSFDD+ KY GAVPSD YLRDVWR +FS+  VL+V G +WTRE Y H V QRWDG +L GDASFKFAKI+RLGAT  GERTRPV+GIFTVFNE EQV
Sbjct:   17 VHHRIPCERCVEYNGTVEESEQRPTSFNAWDVGCLDRLPDYVSKEFPFILTHRSGIDIRLVDRLADDLVHGKGFSAAAKYIRQAHTTKFMAFQLKYVSLADARRSSRVSLFGAAPVPVKFGSFDDTEKYCGAVPSDHYLRDVWRTYFSELPVLEVKGVKWTREDYLHCVHQRWDGTVLAGDASFKFAKIIRLGATAHGERTRPVHGIFTVFNEYEQV 233
[Close]
BLAST of mRNA_P-littoralis_Contig195.93.1 vs. uniprot
Match: A0A6H5L553_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L553_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 1.110e-100
Identity = 145/218 (66.51%), Postives = 169/218 (77.52%), Query Frame = 1 
Query:    1 LNFRYKCAACEAYNGTVEESARRPKTFNAWDADCLERLPDYVSEEL-PYLLTRRPGIDVRLLDRLADMLVRGMSFSGAAKSICEAHVTKFMREQVKYTSIADIRRTQRTGLFGAALTPERFGSFDDSTKYGGAVPSDRYLRDVWRIFFSQALVLKVDGDRWTREHYEHRVIQRWDGEILGGDASFKFAKIVRLGATPGGERTRPVYGIFTVFNEDEQV 651
            + FRYKC  C  YNGTVEES +RP +FNAWD  CL+RLPDYVS+E  P++LT R GID+RL+DRLAD L  G  FS AAK I +AH TKFM  Q+KY S+ D RR+ R  LFGAA  PE+FGSFDD+ KY GAVPSD YLRDVWR +FS+  VL+V+G +WT E Y  RV QRWDG +L GDASFKFAKI+RLGAT  GERTRPV+GIFTVFNE EQ+
Sbjct:    9 IGFRYKCERCVEYNGTVEESEQRPTSFNAWDVGCLDRLPDYVSKEFFPFILTHRSGIDIRLVDRLADDLAHGKGFSAAAKYIRQAHTTKFMVYQLKYVSLNDARRSSRVSLFGAAPVPEKFGSFDDTEKYCGAVPSDHYLRDVWRTYFSELPVLEVEGVKWTWEDYLPRVHQRWDGTVLAGDASFKFAKIIRLGATAHGERTRPVHGIFTVFNEYEQI 226
[Close]
BLAST of mRNA_P-littoralis_Contig195.93.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 3.980e-98
Identity = 158/300 (52.67%), Postives = 199/300 (66.33%), Query Frame = 1 
Query:    1 LNFRYKCAACEAYNGTVEESARRPKTFNAWDADCLERLPDYVSEELPYLLTRRPGIDVRLLDRLADMLVRGMSFSGAAKSICEAHVTKFMREQVKYTSIADIRRTQRTGLFGAA---LTPERFGSFDDSTKYGGAVPSDRYLRDVWRIFFSQALVLKVDGDRWTREHYEHRVIQRWDGEILGGDASFKFAKIVRLGATPGGERTRPVYGIFTVFNEDEQVVFQRPMKTNSLSELVDDLKLFFFGRLVRNGFRLPVLWNTDDCCADRCMLQRMSRELEEATGASSYLGDELSAGVQLESLP 891
            + FRYKCA C  +N   +E+ +R  +FNAW A CL RLP+Y+S+E P+LLT+R GI++ ++DRLAD LV G  FS AAK+IC+AH TKFM +Q+KYTS+   RRT  +G+F +A     PERFGSFDDSTKYGGAVPS+ YLRDVWR++FS+  VL++D   WT E Y+HR++QRWDG+ILGGDA FKFAKI+RLGA  G ERTRPVYG FTVFNE          +   L      ++ FF    +R+       W       +        R  EE TG S YL DE+ AGVQLE LP
Sbjct:  149 MGFRYKCAKCAEFNKGKQEAEKRKTSFNAWGAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVSTRRTS-SGIFRSANLAKIPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEMDSVDWTLEEYQHRLMQRWDGDILGGDALFKFAKIIRLGAKAGEERTRPVYGFFTVFNECGLAASD---EDRCLERAGGGVEAFFHA--IRSQ------WLQGSYSVEH-------RPFEEVTGISLYLEDEVDAGVQLELLP 429
[Close]
BLAST of mRNA_P-littoralis_Contig195.93.1 vs. uniprot
Match: A0A6H5KTU1_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU1_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 6.380e-93
Identity = 158/298 (53.02%), Postives = 198/298 (66.44%), Query Frame = 1 
Query:    7 FRYKCAACEAYNGTVEESARRPKTFNAWDADCLERLPDYVSEELPYLLTRRPGIDVRLLDRLADMLVRGMSFSGAAKSICEAHVTKFMREQVKYTSIADIRRTQRTGLFGAA---LTPERFGSFDDSTKYGGAVPSDRYLRDVWRIFFSQALVLKVDGDRWTREHYEHRVIQRWDGEILGGDASFKFAKIVRLGATPGGERTRPVYGIFTVFNEDEQVVFQRPMKTNSLSELVDDLKLFFFGRLVRNGFRLPVLWNTDDCCADRCMLQRMSRELEEATGASSYLGDELSAGVQLESLP 891
            FRYKCA C  +N   +E+ +R  +FNAWDA CL RLP+Y+S+E P+LLT+R GI++ ++DRLAD LV G  FS AAK+I +AH TKFM +Q+KYTS+   RRT  +G+F +A     PERFGSFDDSTKYGGAVPS+ YLRDV R++FS+  VL+VD   WT E Y HR++QRWDG+ILGGD+SFKFAKI+RLGA  G ERTRPVYG FTVFNE          +   L      ++ FF    +R+       W       +        R +EE TG S YL DE+ AGVQLE LP
Sbjct:   11 FRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVSTRRTS-SGIFRSANLAKIPERFGSFDDSTKYGGAVPSEHYLRDVRRLYFSKLPVLEVDSVDWTLEEYHHRLMQRWDGDILGGDSSFKFAKIIRLGAKAGEERTRPVYGFFTVFNECGLAASD---EDRCLERAGGGVEAFFHA--IRSQ------WLQGSYSVEH-------RPIEEVTGISLYLEDEVDAGVQLELLP 289
[Close]
BLAST of mRNA_P-littoralis_Contig195.93.1 vs. uniprot
Match: A0A6H5KJA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA7_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 2.300e-91
Identity = 132/212 (62.26%), Postives = 165/212 (77.83%), Query Frame = 1 
Query:   13 YKCAACEAYNGTVEESARRPKTFNAWDADCLERLPDYVSEELPYLLTRRPGIDVRLLDRLADMLVRGMSFSGAAKSICEAHVTKFMREQVKYTSIADIRRTQRTGLFGAA---LTPERFGSFDDSTKYGGAVPSDRYLRDVWRIFFSQALVLKVDGDRWTREHYEHRVIQRWDGEILGGDASFKFAKIVRLGATPGGERTRPVYGIFTVFNE 639
            YKCA C  +N   + + +   +FNAWDA CL RLP+Y+S+E P+LLT+R GI++ +LDRLAD LV G  FS   K+I +AH TKFM +Q+KYTS+ + RRT  +G+F +A    TPERFGSFDDSTK+GGAVPS+ YLRDVWR++FS+  VL+VD   WT E Y+HR++QRWDG+ILGGDASFKFAKI+RLGA  G ERTRPVYG FTVFNE
Sbjct:   12 YKCAKCAEFNKGKQRAEKCKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMLDRLADGLVHGKGFSAGTKNIRQAHTTKFMVDQLKYTSLVNTRRTS-SGIFRSANLAKTPERFGSFDDSTKHGGAVPSEHYLRDVWRLYFSKLPVLEVDSVDWTLEEYQHRLMQRWDGDILGGDASFKFAKIIRLGAKAGEERTRPVYGFFTVFNE 222
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4A9_9PHAE2.940e-12561.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQG2_9PHAE1.210e-12259.203'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KDX0_9PHAE9.430e-12259.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVB4_ECTSI4.380e-11569.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7G9_9PHAE4.870e-11262.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE68_9PHAE4.960e-10166.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L553_9PHAE1.110e-10066.51Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPP4_9PHAE3.980e-9852.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTU1_9PHAE6.380e-9353.023'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KJA7_9PHAE2.300e-9162.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig195contigP-littoralis_Contig195:414903..416260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIV2
Preferred nameWRN
PFAMsDEAD,DNA_pol_A_exo1,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size891
Max annot lvl2759|Eukaryota
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons4
Evalue2.02e-66
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
Cds size891
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.798285-CDS-P-littoralis_Contig195:414902..4151511680789937.798285-CDS-P-littoralis_Contig195:414902..415151Pylaiella littoralis U1_48CDSP-littoralis_Contig195 414903..415151 +
1680789937.8117695-CDS-P-littoralis_Contig195:415307..4157061680789937.8117695-CDS-P-littoralis_Contig195:415307..415706Pylaiella littoralis U1_48CDSP-littoralis_Contig195 415308..415706 +
1680789937.8228774-CDS-P-littoralis_Contig195:415821..4159421680789937.8228774-CDS-P-littoralis_Contig195:415821..415942Pylaiella littoralis U1_48CDSP-littoralis_Contig195 415822..415942 +
1680789937.8337166-CDS-P-littoralis_Contig195:416138..4162601680789937.8337166-CDS-P-littoralis_Contig195:416138..416260Pylaiella littoralis U1_48CDSP-littoralis_Contig195 416139..416260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig195.93.1prot_P-littoralis_Contig195.93.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig195 414903..416260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig195.93.1

>prot_P-littoralis_Contig195.93.1 ID=prot_P-littoralis_Contig195.93.1|Name=mRNA_P-littoralis_Contig195.93.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=297bp
LNFRYKCAACEAYNGTVEESARRPKTFNAWDADCLERLPDYVSEELPYLL
TRRPGIDVRLLDRLADMLVRGMSFSGAAKSICEAHVTKFMREQVKYTSIA
DIRRTQRTGLFGAALTPERFGSFDDSTKYGGAVPSDRYLRDVWRIFFSQA
LVLKVDGDRWTREHYEHRVIQRWDGEILGGDASFKFAKIVRLGATPGGER
TRPVYGIFTVFNEDEQVVFQRPMKTNSLSELVDDLKLFFFGRLVRNGFRL
PVLWNTDDCCADRCMLQRMSRELEEATGASSYLGDELSAGVQLESLP
back to top

mRNA from alignment at P-littoralis_Contig195:414903..416260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig195.93.1 ID=mRNA_P-littoralis_Contig195.93.1|Name=mRNA_P-littoralis_Contig195.93.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1358bp|location=Sequence derived from alignment at P-littoralis_Contig195:414903..416260+ (Pylaiella littoralis U1_48)
CTTAATTTCAGGTACAAGTGCGCCGCCTGCGAGGCGTACAATGGGACTGT
GGAGGAGTCGGCCAGACGCCCGAAGACGTTCAACGCTTGGGACGCTGACT
GTCTCGAACGTCTTCCAGACTATGTGTCGGAAGAGCTCCCTTATCTTCTC
ACCCGTCGACCTGGTATCGACGTCCGCCTTCTGGACCGCCTTGCCGACAT
GTTGGTCCGTGGAATGAGCTTCTCCGGGGCTGCGAAGTCCATTTGCGAGG
TGATATATACAAAGTCTTCGTTTCAGATCGATTTACCGTGGTTTTCGTAG
AGTAACACTTCTGCGAATGCTGACGTTTCTTTTTCGTGTGCGGGAGGTAT
TGAAACGAATCATGCCGGCACCCGTGTACTCGCAACGTCCTGAATTGTTT
GACAGGCGCACGTGACGAAGTTCATGAGGGAGCAGGTAAAGTACACGTCG
ATAGCGGACATCCGGCGTACGCAGCGGACGGGTTTGTTCGGAGCCGCCCT
GACACCGGAGAGGTTTGGGAGTTTCGACGACTCGACGAAGTACGGCGGTG
CGGTGCCGTCGGACCGCTACCTAAGGGACGTGTGGCGGATCTTTTTCTCG
CAAGCTCTTGTTCTGAAGGTGGACGGCGACCGGTGGACGCGGGAGCACTA
CGAGCACCGGGTTATTCAGAGGTGGGACGGAGAAATACTCGGTGGGGATG
CTTCCTTCAAGTTTGCGAAGATCGTTCGGCTCGGGGCCACACCGGGGGGA
GAGCGTACACGGCCGGTGTACGGCATCTTCACAGTGTTCAACGAGGACGA
GCAGGTACGGAACAGGGTAGGAGTTCTTCGTCTTCGTCTCCTCTATGTGG
ATGCCGGTGCCTCATGTTTCATGACGTGTCCCACAAAAGAGTTGGCATCG
TTGTGTCTACCCATTTCAGGTGGTCTTTCAGCGCCCGATGAAAACCAATT
CCCTGAGCGAGCTGGTGGATGATTTGAAGCTTTTCTTCTTTGGGCGCCTC
GTTCGCAACGGCTTCAGGCTGCCTGTGCTGTGGAACACAGGTGGGGAGCA
GTGATAAGGTCGTGAGCAGGTTAGTGGAAGTGATAGCTACCCATGCTGAC
ACACGGTGAAAAAACTGTCGAGATTCGAGCTCGTGTACTTGAAGGGTACA
GGCCTATCACGGAAAATTATTTTGCGATCACATCTGATGGGCCCTCCGTC
GCCCCCGCCGCCTGCTTGTGTTGTCGATTTTGCTAGATGACTGCTGTGCT
GACCGTTGCATGCTACAGCGGATGAGTCGCGAGCTGGAGGAGGCAACAGG
AGCCAGCTCCTACTTGGGGGACGAGCTGAGCGCCGGCGTTCAGCTGGAGA
GCTTGCCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig195:414903..416260+

>mRNA_P-littoralis_Contig195.93.1 ID=mRNA_P-littoralis_Contig195.93.1|Name=mRNA_P-littoralis_Contig195.93.1|organism=Pylaiella littoralis U1_48|type=CDS|length=891bp|location=Sequence derived from alignment at P-littoralis_Contig195:414903..416260+ (Pylaiella littoralis U1_48)
CTTAATTTCAGGTACAAGTGCGCCGCCTGCGAGGCGTACAATGGGACTGT
GGAGGAGTCGGCCAGACGCCCGAAGACGTTCAACGCTTGGGACGCTGACT
GTCTCGAACGTCTTCCAGACTATGTGTCGGAAGAGCTCCCTTATCTTCTC
ACCCGTCGACCTGGTATCGACGTCCGCCTTCTGGACCGCCTTGCCGACAT
GTTGGTCCGTGGAATGAGCTTCTCCGGGGCTGCGAAGTCCATTTGCGAGG
CGCACGTGACGAAGTTCATGAGGGAGCAGGTAAAGTACACGTCGATAGCG
GACATCCGGCGTACGCAGCGGACGGGTTTGTTCGGAGCCGCCCTGACACC
GGAGAGGTTTGGGAGTTTCGACGACTCGACGAAGTACGGCGGTGCGGTGC
CGTCGGACCGCTACCTAAGGGACGTGTGGCGGATCTTTTTCTCGCAAGCT
CTTGTTCTGAAGGTGGACGGCGACCGGTGGACGCGGGAGCACTACGAGCA
CCGGGTTATTCAGAGGTGGGACGGAGAAATACTCGGTGGGGATGCTTCCT
TCAAGTTTGCGAAGATCGTTCGGCTCGGGGCCACACCGGGGGGAGAGCGT
ACACGGCCGGTGTACGGCATCTTCACAGTGTTCAACGAGGACGAGCAGGT
GGTCTTTCAGCGCCCGATGAAAACCAATTCCCTGAGCGAGCTGGTGGATG
ATTTGAAGCTTTTCTTCTTTGGGCGCCTCGTTCGCAACGGCTTCAGGCTG
CCTGTGCTGTGGAACACAGATGACTGCTGTGCTGACCGTTGCATGCTACA
GCGGATGAGTCGCGAGCTGGAGGAGGCAACAGGAGCCAGCTCCTACTTGG
GGGACGAGCTGAGCGCCGGCGTTCAGCTGGAGAGCTTGCCG
back to top