mRNA_P-littoralis_Contig195.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig195.92.1
Unique NamemRNA_P-littoralis_Contig195.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig195.92.1 vs. uniprot
Match: A0A6H5KTC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.020e-20
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:  139 AANGGPATAERKGPHCMMRLVGIVVEDEVRPLLIDSRLQANRSQLDASAVGSRSEVWQLAARRFRDPEYQ 348
            +  G  + AERKGPHCMMRLVGI+ ED +RPLLI+SRLQA R  L  S+VG R+++W     RFRDP++Q
Sbjct:   82 SVGGSGSNAERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLHTSSVGPRNDMWTEVTTRFRDPDHQ 151
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BLAST of mRNA_P-littoralis_Contig195.92.1 vs. uniprot
Match: D8LJH4_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH4_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.890e-19
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  157 ATAERKGPHCMMRLVGIVVEDEVRPLLIDSRLQANRSQLDASAVGSRSEVWQLAARRFRDPEYQ 348
            +  ERKGPHCMMRLVGI+ ED +RPLLI+SRLQA R  LD S+VG R+E+W     RFRDP++Q
Sbjct:  296 SNTERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNELWTEVTARFRDPDHQ 359
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BLAST of mRNA_P-littoralis_Contig195.92.1 vs. uniprot
Match: D7FJ39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ39_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.960e-19
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  157 ATAERKGPHCMMRLVGIVVEDEVRPLLIDSRLQANRSQLDASAVGSRSEVWQLAARRFRDPEYQ 348
            +  ERKGPHCMMRLVGI+ ED +RPLLI+SRLQA R  LD S+VG R+E+W     RFRDP++Q
Sbjct:  173 SNTERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNELWTEVTARFRDPDHQ 236
[Close]
BLAST of mRNA_P-littoralis_Contig195.92.1 vs. uniprot
Match: D7FU69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU69_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.500e-19
Identity = 41/64 (64.06%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  157 ATAERKGPHCMMRLVGIVVEDEVRPLLIDSRLQANRSQLDASAVGSRSEVWQLAARRFRDPEYQ 348
            +  ERKGPHCMMRLVGI+ ED +RPLLI+SRLQA R  LD S+VG R+E+W     RFRDP++Q
Sbjct:  296 SNTERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNELWTEVTARFRDPDHQ 359
[Close]
BLAST of mRNA_P-littoralis_Contig195.92.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.580e-18
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  157 ATAERKGPHCMMRLVGIVVEDEVRPLLIDSRLQANRSQLDASAVGSRSEVWQLAARRFRDPEYQ 348
            +  ERKGPHCMMRLVGI+ ED +RPLLI+SRLQA R  LD S+VG R+++W     RFRDP++Q
Sbjct:  408 SNTERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSSVGPRNDLWTEVTTRFRDPDHQ 471
[Close]
BLAST of mRNA_P-littoralis_Contig195.92.1 vs. uniprot
Match: D7FSJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ6_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.910e-18
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:  157 ATAERKGPHCMMRLVGIVVEDEVRPLLIDSRLQANRSQLDASAVGSRSEVWQLAARRFRDPEY 345
            +  ERKGPHCMMRLVGI+ ED +RPLLIDSR QA R +LD S VG R+++W     RFRDP++
Sbjct:  146 SNTERKGPHCMMRLVGILCEDFIRPLLIDSRFQATRQELDTSTVGPRNDLWTEVTDRFRDPDH 208
[Close]
BLAST of mRNA_P-littoralis_Contig195.92.1 vs. uniprot
Match: A0A6H5L680_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L680_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.650e-18
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  148 GGPATAERKGPHCMMRLVGIVVEDEVRPLLIDSRLQANRSQLDASAVGSRSEVWQLAARRFRDPEY 345
            G  +  ERKGPHCMMRLVGI+ ED +RPL+++SRLQA R +LD SA G R+ +W     RFRDP Y
Sbjct:   65 GSGSNTERKGPHCMMRLVGILCEDSIRPLVMNSRLQATRQELDTSAGGPRNNLWTEVTDRFRDPGY 130
[Close]
BLAST of mRNA_P-littoralis_Contig195.92.1 vs. uniprot
Match: A0A6H5K7K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 8.140e-18
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:  166 ERKGPHCMMRLVGIVVEDEVRPLLIDSRLQANRSQLDASAVGSRSEVWQLAARRFRDPEY 345
            ERKGPHCMMRLVGI+ ED +RPL+I+SRLQA R +LD SAVG R  +W     RFRDP +
Sbjct:  208 ERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRH 267
[Close]
BLAST of mRNA_P-littoralis_Contig195.92.1 vs. uniprot
Match: A0A6H5KQ52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ52_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.280e-17
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:  166 ERKGPHCMMRLVGIVVEDEVRPLLIDSRLQANRSQLDASAVGSRSEVWQLAARRFRDPEY 345
            ERKGPHCMMRLVGI+ ED +RPL+I+SRLQA R +LD SAVG R  +W     RFRDP +
Sbjct:   73 ERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELDTSAVGPRKNLWPEVTDRFRDPRH 132
[Close]
BLAST of mRNA_P-littoralis_Contig195.92.1 vs. uniprot
Match: A0A6H5JWQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.510e-17
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  148 GGPATAERKGPHCMMRLVGIVVEDEVRPLLIDSRLQANRSQLDASAVGSRSEVWQLAARRFRDPEY 345
            G  +  ERKGPHCMMRLVGI+ ED +RPL+I+SRLQA R +LD SAVG R  +W     RFRDP +
Sbjct:  354 GSGSITERKGPHCMMRLVGILCEDSIRPLVINSRLQATRQELDTSAVGPRRHLWTEVTDRFRDPRH 419
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTC6_9PHAE2.020e-2058.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJH4_ECTSI2.890e-1964.06Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
D7FJ39_ECTSI3.960e-1964.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU69_ECTSI5.500e-1964.06Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KKV3_9PHAE1.580e-1862.50Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7FSJ6_ECTSI1.910e-1861.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L680_9PHAE3.650e-1859.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7K9_9PHAE8.140e-1865.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ52_9PHAE1.280e-1765.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWQ7_9PHAE1.510e-1760.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig195contigP-littoralis_Contig195:398483..398830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIC6
Model size349
Max annot lvl2880.D7FIC6|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.92e-20
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.7679374-CDS-P-littoralis_Contig195:398482..3988301680789937.7679374-CDS-P-littoralis_Contig195:398482..398830Pylaiella littoralis U1_48CDSP-littoralis_Contig195 398483..398830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig195.92.1prot_P-littoralis_Contig195.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig195 398483..398830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig195.92.1

>prot_P-littoralis_Contig195.92.1 ID=prot_P-littoralis_Contig195.92.1|Name=mRNA_P-littoralis_Contig195.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MFDTMDAEDGVTATAGGEGESADAASSNGGAAAGCAGGGSAGQGGDAANG
GPATAERKGPHCMMRLVGIVVEDEVRPLLIDSRLQANRSQLDASAVGSRS
EVWQLAARRFRDPEYQ
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mRNA from alignment at P-littoralis_Contig195:398483..398830+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig195.92.1 ID=mRNA_P-littoralis_Contig195.92.1|Name=mRNA_P-littoralis_Contig195.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig195:398483..398830+ (Pylaiella littoralis U1_48)
ATGTTCGATACCATGGATGCGGAGGATGGCGTAACCGCTACGGCGGGGGG
GGAAGGCGAATCGGCGGATGCCGCCAGTTCGAACGGCGGCGCTGCTGCCG
GGTGTGCAGGTGGCGGTTCAGCTGGACAGGGTGGGGATGCAGCTAACGGG
GGTCCGGCCACGGCGGAGCGCAAAGGCCCGCACTGCATGATGCGGCTCGT
TGGGATCGTCGTAGAAGACGAGGTGCGCCCACTGCTTATCGACAGCCGGC
TGCAGGCGAATCGGAGCCAGCTGGACGCCTCGGCGGTGGGGTCGCGGAGC
GAAGTGTGGCAGTTGGCCGCTCGTCGTTTTCGGGATCCGGAGTACCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig195:398483..398830+

>mRNA_P-littoralis_Contig195.92.1 ID=mRNA_P-littoralis_Contig195.92.1|Name=mRNA_P-littoralis_Contig195.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig195:398483..398830+ (Pylaiella littoralis U1_48)
ATGTTCGATACCATGGATGCGGAGGATGGCGTAACCGCTACGGCGGGGGG
GGAAGGCGAATCGGCGGATGCCGCCAGTTCGAACGGCGGCGCTGCTGCCG
GGTGTGCAGGTGGCGGTTCAGCTGGACAGGGTGGGGATGCAGCTAACGGG
GGTCCGGCCACGGCGGAGCGCAAAGGCCCGCACTGCATGATGCGGCTCGT
TGGGATCGTCGTAGAAGACGAGGTGCGCCCACTGCTTATCGACAGCCGGC
TGCAGGCGAATCGGAGCCAGCTGGACGCCTCGGCGGTGGGGTCGCGGAGC
GAAGTGTGGCAGTTGGCCGCTCGTCGTTTTCGGGATCCGGAGTACCAG
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