mRNA_P-littoralis_Contig195.86.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig195.86.1
Unique NamemRNA_P-littoralis_Contig195.86.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig195.86.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 812 bits (2098), Expect = 1.080e-276
Identity = 408/432 (94.44%), Postives = 418/432 (96.76%), Query Frame = 2 
Query:    2 SDSLNRADKEVQHYVPRDSEKADQEDRVRNRRRRQARVLQFAELGGKAAPFTKYGKNYNDGQVRSMYLHVGKYALGLPAFGPNFLRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYELRKAYNLAKSDNVNDDPSSFSRQISGIISAQELNNLSCLSDKDAIRDQQHDALNTWIGESLFDGNKPEPTDGVVQKLMREILAQNREILMQSRGLSTENIRGDDETKELQKQLGKEELKFKIVKMQVERQEIERKYGLSASAGSGSVVGDKRPSV*PSCDKGDASCKGVKSTDEASQPPRKRVKRGIFSVDLTPLLLRMNALFNEKVVEMKLVPGKPYPRRTLENCMYHVSTIGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDVIGRQKQEGRSEWSYWFCKGCKKEECVCDSQNM 1297
            SDSL RADKEVQHY PRDSEKADQEDRVRNRRRRQARVLQFAELG KAAPFTKYGKNYNDGQ+RSMYLHVGKYALGLPAFGPN LRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYE+RKAYNLAKSDNVNDDPSSFSRQISGIISAQELNN SCLSDKDAIRDQQHDALNTWIG+SLFDGNKPEPTDGVV+KLMREILAQNREILMQSRG+STENIRGDDETKELQKQLGKEELKFKIVKMQVERQEIERK+GLSASAGSGSVV DKR SV PSCDKGDASCKGV+S DEASQPPRKR+KRG FSVDL PLLLRMNALFNEKVVEMKLVPGK YPRRTLENCMYHVST GGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRD++GRQKQEGRSEWSYWFCKGCKK ECVCDSQNM
Sbjct: 1391 SDSLKRADKEVQHYAPRDSEKADQEDRVRNRRRRQARVLQFAELGDKAAPFTKYGKNYNDGQLRSMYLHVGKYALGLPAFGPNILRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYEMRKAYNLAKSDNVNDDPSSFSRQISGIISAQELNNRSCLSDKDAIRDQQHDALNTWIGDSLFDGNKPEPTDGVVEKLMREILAQNREILMQSRGISTENIRGDDETKELQKQLGKEELKFKIVKMQVERQEIERKHGLSASAGSGSVVSDKRSSVQPSCDKGDASCKGVESIDEASQPPRKRMKRGTFSVDLMPLLLRMNALFNEKVVEMKLVPGKSYPRRTLENCMYHVSTFGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQKQEGRSEWSYWFCKGCKKVECVCDSQNM 1822
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BLAST of mRNA_P-littoralis_Contig195.86.1 vs. uniprot
Match: A0A6H5JMD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD7_9PHAE)

HSP 1 Score: 694 bits (1790), Expect = 9.220e-250
Identity = 344/367 (93.73%), Postives = 355/367 (96.73%), Query Frame = 2 
Query:  197 MYLHVGKYALGLPAFGPNFLRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYELRKAYNLAKSDNVNDDPSSFSRQISGIISAQELNNLSCLSDKDAIRDQQHDALNTWIGESLFDGNKPEPTDGVVQKLMREILAQNREILMQSRGLSTENIRGDDETKELQKQLGKEELKFKIVKMQVERQEIERKYGLSASAGSGSVVGDKRPSV*PSCDKGDASCKGVKSTDEASQPPRKRVKRGIFSVDLTPLLLRMNALFNEKVVEMKLVPGKPYPRRTLENCMYHVSTIGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDVIGRQKQEGRSEWSYWFCKGCKKEECVCDSQNM 1297
            MYLHVGKYALGLPAFGPN LRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYE+RKAYNLAKSDNVNDDPSSFSRQISGIISAQELNN SCLSDKDAIRDQQHDALNTWIG+SLFDGNKPEPTDGVV+KLMREILAQNREILMQSRG+STENIRGDDETKELQKQLGKEELKFKIVKMQVERQEIERK+GLSASAGSGSVVGDKRPS  PSCDK D+SCKGV+S D A+QPPRKRVKRG FSVDLTPLLLRMNALFNEKVVEMKLVPGK YPRRTLENCMYHVST GGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRD++GRQKQEGRSEWSYWFCKGCKK ECVCD+Q M
Sbjct:    1 MYLHVGKYALGLPAFGPNILRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYEMRKAYNLAKSDNVNDDPSSFSRQISGIISAQELNNRSCLSDKDAIRDQQHDALNTWIGDSLFDGNKPEPTDGVVEKLMREILAQNREILMQSRGISTENIRGDDETKELQKQLGKEELKFKIVKMQVERQEIERKHGLSASAGSGSVVGDKRPSAQPSCDKRDSSCKGVESIDAANQPPRKRVKRGTFSVDLTPLLLRMNALFNEKVVEMKLVPGKSYPRRTLENCMYHVSTFGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQKQEGRSEWSYWFCKGCKKRECVCDNQKM 367
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BLAST of mRNA_P-littoralis_Contig195.86.1 vs. uniprot
Match: A0A6H5KG30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG30_9PHAE)

HSP 1 Score: 584 bits (1505), Expect = 5.980e-203
Identity = 309/432 (71.53%), Postives = 316/432 (73.15%), Query Frame = 2 
Query:    2 SDSLNRADKEVQHYVPRDSEKADQEDRVRNRRRRQARVLQFAELGGKAAPFTKYGKNYNDGQVRSMYLHVGKYALGLPAFGPNFLRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYELRKAYNLAKSDNVNDDPSSFSRQISGIISAQELNNLSCLSDKDAIRDQQHDALNTWIGESLFDGNKPEPTDGVVQKLMREILAQNREILMQSRGLSTENIRGDDETKELQKQLGKEELKFKIVKMQVERQEIERKYGLSASAGSGSVVGDKRPSV*PSCDKGDASCKGVKSTDEASQPPRKRVKRGIFSVDLTPLLLRMNALFNEKVVEMKLVPGKPYPRRTLENCMYHVSTIGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDVIGRQKQEGRSEWSYWFCKGCKKEECVCDSQNM 1297
            SDSLNRADKEVQHY PRDSEKADQED VRNRRRRQARVLQFAELG KAAPFTKYGKNYNDGQ+RSMYLHVGKYALGLPAFGPN LRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYE+RKAYNLAKSDNVNDDPSSFSRQISGIISAQELNN SCLSDKDAIRDQQHDALNTWIG+SLFDGNKPEPTDGVV+KLM E                                                                                              ASQPPRKR+KRG FSVDL PLLLRM           KLVPGK YPRRTLENCMYHVST GGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRD++GRQKQEGRSEWSYWFCKGCKK ECVCDSQNM
Sbjct:  264 SDSLNRADKEVQHYAPRDSEKADQEDNVRNRRRRQARVLQFAELGDKAAPFTKYGKNYNDGQLRSMYLHVGKYALGLPAFGPNILRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYEMRKAYNLAKSDNVNDDPSSFSRQISGIISAQELNNRSCLSDKDAIRDQQHDALNTWIGDSLFDGNKPEPTDGVVEKLMHE----------------------------------------------------------------------------------------------ASQPPRKRMKRGTFSVDLMPLLLRM-----------KLVPGKSYPRRTLENCMYHVSTFGGLCKDQVREYMVAHVGEDDSSRSDVLQFYELFPIRKKEKMVRDIVGRQKQEGRSEWSYWFCKGCKKVECVCDSQNM 590
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BLAST of mRNA_P-littoralis_Contig195.86.1 vs. uniprot
Match: D7FKZ5_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ5_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 3.470e-36
Identity = 82/191 (42.93%), Postives = 117/191 (61.26%), Query Frame = 2 
Query:   11 LNRADKEVQHYVPRDSEKADQEDRVRNRRRRQARVLQFAELGGKAAPFTKYGKNYNDGQVRSMYLHVGKYALGLPAFGPNFLRTIHVTTVMTVCYTLGIPQSDDRVLNHFALARHGEYELRKAYNLAKSDNVNDDPSSFSRQISGIISAQELNNLSCLSDKDAIRDQQHDALNTWIGESLFDGNKPEPTDG 583
            L  A++++  Y P +SE+ ++EDR +  +R Q R + +AELG K   FT YGKNY+   +  MY +VG+Y LGLPAFGPN LR+IHVT VM VCY +GI   D R++ HFALARHGE+E ++AYN    D V DDP+S     +GI+ +Q+ +N     DK  ++  Q   L   + +S  +    +   G
Sbjct: 1488 LAAAERQLTEYAPTESERKNEEDRAKAEKRDQ-REIGYAELGDKVCTFTAYGKNYDQSMLNDMYKYVGEYYLGLPAFGPNILRSIHVTDVMEVCYKIGIHYDDMRLVRHFALARHGEFERKRAYNGHTMDMVQDDPNSIGAVFAGILQSQDYSNRPL--DKQGMKVAQEKTLKAMLHDSYDESGVSDVVGG 1675
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig195.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K4R3_9PHAE1.080e-27694.44PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JMD7_9PHAE9.220e-25093.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG30_9PHAE5.980e-20371.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKZ5_ECTSI3.470e-3642.93PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig195contigP-littoralis_Contig195:375850..377283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1434
Hectar predicted targeting categoryother localisation
Exons1
Cds size639
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.5695326-UTR-P-littoralis_Contig195:375849..3760451680789937.5695326-UTR-P-littoralis_Contig195:375849..376045Pylaiella littoralis U1_48UTRP-littoralis_Contig195 375850..376045 +
1680789937.5889-UTR-P-littoralis_Contig195:376684..3772831680789937.5889-UTR-P-littoralis_Contig195:376684..377283Pylaiella littoralis U1_48UTRP-littoralis_Contig195 376685..377283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.5794632-CDS-P-littoralis_Contig195:376045..3766841680789937.5794632-CDS-P-littoralis_Contig195:376045..376684Pylaiella littoralis U1_48CDSP-littoralis_Contig195 376046..376684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig195.86.1prot_P-littoralis_Contig195.86.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig195 376046..376684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig195.86.1

>prot_P-littoralis_Contig195.86.1 ID=prot_P-littoralis_Contig195.86.1|Name=mRNA_P-littoralis_Contig195.86.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=213bp
MYLHVGKYALGLPAFGPNFLRTIHVTTVMTVCYTLGIPQSDDRVLNHFAL
ARHGEYELRKAYNLAKSDNVNDDPSSFSRQISGIISAQELNNLSCLSDKD
AIRDQQHDALNTWIGESLFDGNKPEPTDGVVQKLMREILAQNREILMQSR
GLSTENIRGDDETKELQKQLGKEELKFKIVKMQVERQEIERKYGLSASAG
SGSVVGDKRPSV*
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mRNA from alignment at P-littoralis_Contig195:375850..377283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig195.86.1 ID=mRNA_P-littoralis_Contig195.86.1|Name=mRNA_P-littoralis_Contig195.86.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1434bp|location=Sequence derived from alignment at P-littoralis_Contig195:375850..377283+ (Pylaiella littoralis U1_48)
GAGCGACTCTCTCAACAGAGCCGATAAAGAGGTTCAACATTACGTACCCA
GAGATTCAGAGAAGGCTGACCAGGAGGATAGGGTGAGAAATCGCCGTCGT
AGGCAAGCGAGGGTTTTACAGTTTGCCGAGCTTGGTGGCAAGGCAGCTCC
GTTCACCAAGTACGGAAAAAACTACAACGACGGTCAGGTGCGCAGCATGT
ATCTCCACGTGGGGAAGTATGCTTTGGGCTTACCCGCGTTCGGGCCGAAT
TTCCTCCGTACGATCCATGTCACGACCGTTATGACGGTCTGTTATACGCT
GGGAATCCCTCAGTCGGATGACAGGGTGTTAAACCACTTTGCGCTGGCTA
GGCACGGGGAGTACGAGCTGAGAAAAGCGTACAACTTGGCAAAAAGTGAC
AACGTGAATGATGATCCCAGTTCCTTCAGTAGGCAGATATCTGGTATCAT
TAGTGCGCAGGAGCTGAACAACCTTTCATGTTTGAGCGACAAGGATGCGA
TACGTGACCAGCAGCACGACGCTCTGAACACGTGGATTGGTGAATCTTTG
TTCGACGGGAACAAACCCGAGCCGACTGACGGTGTTGTACAAAAGCTGAT
GCGTGAGATACTTGCACAGAATCGAGAGATTTTGATGCAGAGCAGAGGAC
TCTCAACAGAAAACATTCGGGGAGACGATGAAACGAAAGAGCTTCAGAAG
CAACTTGGGAAAGAGGAACTTAAGTTCAAAATAGTCAAAATGCAAGTCGA
GAGGCAAGAGATTGAACGAAAGTATGGGCTTAGTGCGAGCGCGGGGTCGG
GTTCGGTGGTAGGTGACAAGCGCCCTTCTGTCTGACCCTCTTGTGACAAG
GGAGATGCGTCGTGTAAGGGTGTCAAGAGCACAGACGAGGCCAGTCAGCC
TCCAAGAAAGCGGGTGAAGAGGGGTATATTTTCGGTCGACCTTACGCCTC
TCTTGCTGCGGATGAATGCGCTTTTCAACGAGAAGGTTGTCGAGATGAAG
TTGGTTCCGGGTAAGCCCTATCCGCGACGCACATTGGAGAACTGCATGTA
CCATGTTTCTACGATTGGCGGATTGTGTAAGGATCAGGTCAGAGAGTACA
TGGTGGCGCACGTTGGGGAGGACGATTCCAGTCGTAGCGATGTGCTTCAA
TTCTACGAACTGTTTCCCATAAGAAAGAAAGAGAAAATGGTCAGGGATGT
TATTGGGAGGCAGAAGCAGGAGGGGAGAAGCGAGTGGTCCTATTGGTTTT
GCAAGGGTTGCAAGAAAGAAGAGTGCGTGTGCGACAGTCAGAATATGTGA
TTGTTTTTTTTTTTTTTACTTTGGTCGGTGATTGGCATGTGCTTTTGACT
TGGACACATTCTGTCATTGAATTTATTTCAAAATTGCATTGAACCATGTT
TTGTGACAAGCCGGGACGACGCGGCCCGGTTGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig195:375850..377283+

>mRNA_P-littoralis_Contig195.86.1 ID=mRNA_P-littoralis_Contig195.86.1|Name=mRNA_P-littoralis_Contig195.86.1|organism=Pylaiella littoralis U1_48|type=CDS|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig195:375850..377283+ (Pylaiella littoralis U1_48)
ATGTATCTCCACGTGGGGAAGTATGCTTTGGGCTTACCCGCGTTCGGGCC
GAATTTCCTCCGTACGATCCATGTCACGACCGTTATGACGGTCTGTTATA
CGCTGGGAATCCCTCAGTCGGATGACAGGGTGTTAAACCACTTTGCGCTG
GCTAGGCACGGGGAGTACGAGCTGAGAAAAGCGTACAACTTGGCAAAAAG
TGACAACGTGAATGATGATCCCAGTTCCTTCAGTAGGCAGATATCTGGTA
TCATTAGTGCGCAGGAGCTGAACAACCTTTCATGTTTGAGCGACAAGGAT
GCGATACGTGACCAGCAGCACGACGCTCTGAACACGTGGATTGGTGAATC
TTTGTTCGACGGGAACAAACCCGAGCCGACTGACGGTGTTGTACAAAAGC
TGATGCGTGAGATACTTGCACAGAATCGAGAGATTTTGATGCAGAGCAGA
GGACTCTCAACAGAAAACATTCGGGGAGACGATGAAACGAAAGAGCTTCA
GAAGCAACTTGGGAAAGAGGAACTTAAGTTCAAAATAGTCAAAATGCAAG
TCGAGAGGCAAGAGATTGAACGAAAGTATGGGCTTAGTGCGAGCGCGGGG
TCGGGTTCGGTGGTAGGTGACAAGCGCCCTTCTGTCTGA
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